Ggra2183.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2183.t1
Unique NameGgra2183.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length409
Homology
BLAST of Ggra2183.t1 vs. uniprot
Match: A0A2V3J0G0 (Polyadenylate-binding protein-interacting protein 7 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0G0_9FLOR)

HSP 1 Score: 482 bits (1240), Expect = 1.420e-166
Identity = 273/413 (66.10%), Postives = 317/413 (76.76%), Query Frame = 0
Query:    1 MQHGAHDQSGINPKSVNSNENGTDYTTVDYVSSNFSSLSF-TDNP----FHSSYPFCNNHQPTYPAYDDNTTFTSSPLSQIDFGSTHSQRLHPYPYPYSHEPASSDVASYDITQPVQPVSPPAKSTLNAHAPEFVPSFAVLPAEEPXXXXXXXXXXXXXXANPETTVEHAVENFERQFPPLPGSKTSPTEKGKPVLRKALGWHEIEHEQREKARWQKHLDVKHNFVHGMQSVNDSPLAHEEIAPVSGDVGNVWVSTGRSVAELYEELRAEAAEQASIRNKYFDRAAAAFKRNDGATAKKMGALGREANERMKELHSKAANAIFATRNPPHVLDVIDLHGLHVNEALERLPSALEGKHGRIRILTGTGHHTKGTGRARLRPAVKKWLKDNDYFFEEVVDANEYVGSFIVDIENR 408
            MQ  AHDQ  IN   V   ++  DY  +DY++ + ++LSF TD P     ++ Y + NN+Q  +    +             F +  S       YP    P  S   S +  QP      P KSTLNAHAPEFVPSFAVLPAEEPXXXXXXXXXXXXXX   ETTVEHAV+NFERQFPPLPGSK SP E  KPVLRKALGWHE+EHEQREK RW++HLD + NF+  +QSV+++    E+IAPV+GDVGNVWVSTG+SVAELYEELRAEAA+QASIRNKYFDRAAAAFKRNDGATAKKMGALGREANERMKELH +AA+AIFA RNPPHV DVIDLHGLHV+EA+ERLP+ALE K G+IRILTGTGHHTKGTGRARLRPAVKKWL++N++FFEEV+DANEYVGSF+VD++ R
Sbjct:    1 MQPRAHDQRRINQAPVIPTDDVDDYPAIDYLNDSLNALSFNTDIPQQHHLYNPYSYYNNYQGAFSTQPEPNASAPVHYQPQQFEALPSDFTPFAAYPTDKAPYIS--RSQNPVQPTVEPRTPTKSTLNAHAPEFVPSFAVLPAEEPXXXXXXXXXXXXXXXXXETTVEHAVQNFERQFPPLPGSKNSPEETKKPVLRKALGWHELEHEQREKVRWERHLDEQKNFLQALQSVSEATDVDEDIAPVTGDVGNVWVSTGQSVAELYEELRAEAAQQASIRNKYFDRAAAAFKRNDGATAKKMGALGREANERMKELHRQAADAIFAKRNPPHVHDVIDLHGLHVSEAIERLPAALEDKAGKIRILTGTGHHTKGTGRARLRPAVKKWLQENEFFFEEVIDANEYVGSFVVDLKKR 411          
BLAST of Ggra2183.t1 vs. uniprot
Match: A0A7S3EKS9 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EKS9_9RHOD)

HSP 1 Score: 152 bits (385), Expect = 6.040e-39
Identity = 86/191 (45.03%), Postives = 125/191 (65.45%), Query Frame = 0
Query:  223 GMQSVNDSPL-----AHEEIAPVSGDVG-NVWVSTGRSVAELYEELRAEAAEQASIRNKYFDRAAAAFKRNDGATAKKMGALGREANERMKELHSKAANAIFATRNPPHVLD-VIDLHGLHVNEALERLPSALEG--KHGRIRILTGTGHHTKGT-GRARLRPAVKKWLKDNDYFFEEVVDANEYVGSFIV 403
            G  +++D+ +     +H   A +    G   WV TG SV+ELY+  R EA++ A +RN+ F +AAAA    +GA A +  + GR  N +MKE H+ AA+AIF +RNP  +    +DLHGLHV EA+ERL   LEG  KH  +RILTG+GHH++G  G  RL+PAV ++L+D+ Y +EE+ D+N+YVG++ V
Sbjct:  173 GWSNIDDTAVPISTRSHASSASIRQTTGVEAWVETGESVSELYKRYREEASDLARLRNQCFAQAAAAASAGNGAAAHQQASKGRAYNLKMKEKHALAADAIFRSRNPQGIAGGQLDLHGLHVKEAIERLDLELEGATKHSTVRILTGSGHHSRGIHGAPRLKPAVGRYLRDSGYQYEEIADSNKYVGAYRV 363          
BLAST of Ggra2183.t1 vs. uniprot
Match: A0A2P4XU03 (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XU03_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.520e-28
Identity = 81/183 (44.26%), Postives = 108/183 (59.02%), Query Frame = 0
Query:  231 PLAHEEIAPVSGDVGNVWVSTGRSVAELYEELRAEAAEQASIRNKYFDRAAAAFKRNDGATAKKMGALGREANERMKELHSKAANAIFATRNPPHVL---DVIDLHGLHVNEALERLPSALE--GKHG--RIRILTGTGHHTKGT-GRARLRPAVKKWLKDNDYFFEEVVDANEYVGSFIVDI 405
            PL H+  A  +  +G  WVSTG+SVA  Y ELR +A + A  RNK F  A  A++  + A AK +   G E N +MK  H  AA+ IF +RNPP+ L    ++DLHGLHV EA+E L   L   G  G   I ++TG+GHH+KG  G ARL PAV+++L    Y F  V D   +VG  +VD+
Sbjct:  222 PLYHK--AGSNESIGTKWVSTGQSVATQYLELREQAYQMACARNKCFMGATQAYRNGNKALAKGLSKQGHEYNTKMKHFHFLAASEIFESRNPPNQLYMDRMMDLHGLHVAEAVEFLTHMLPKLGDEGVDSIYLVTGSGHHSKGPDGNARLLPAVERFLAGEGYQFTPVADGAGFVGMLLVDL 402          
BLAST of Ggra2183.t1 vs. uniprot
Match: G4ZFB7 (Uncharacterized protein n=18 Tax=Phytophthora TaxID=4783 RepID=G4ZFB7_PHYSP)

HSP 1 Score: 127 bits (318), Expect = 3.130e-28
Identity = 80/183 (43.72%), Postives = 107/183 (58.47%), Query Frame = 0
Query:  231 PLAHEEIAPVSGDVGNVWVSTGRSVAELYEELRAEAAEQASIRNKYFDRAAAAFKRNDGATAKKMGALGREANERMKELHSKAANAIFATRNPPHVL---DVIDLHGLHVNEALE----RLPSALEGKHGRIRILTGTGHHTKGT-GRARLRPAVKKWLKDNDYFFEEVVDANEYVGSFIVDI 405
            PL H+  A  S  +G  WVSTG+SVA  Y ELR +A E A  RNK F  A  A++  + A AK +   G E N +MK  H  AA+ IF +RNPP+ L    ++DLHGLHV EA+E     LP   +     I ++TG+GHH+KG  G ARL PAV+++L    Y +  V D   +VG  +VD+
Sbjct:  420 PLYHK--AGSSEGIGTKWVSTGQSVATQYLELREQAYEMACARNKCFMGATQAYRNGNKALAKGLSKQGHEYNVKMKNFHFLAASEIFESRNPPNQLYMDRMMDLHGLHVAEAVEFLTQMLPKLADESVDSIYLVTGSGHHSKGPDGNARLLPAVERFLAGEGYQYTPVADGAGFVGMLLVDL 600          
BLAST of Ggra2183.t1 vs. uniprot
Match: A0A6H5JKG2 (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG2_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 7.250e-28
Identity = 79/181 (43.65%), Postives = 103/181 (56.91%), Query Frame = 0
Query:  232 LAHEEIAPVSGDVGNVWVSTGRSVAELYEELRAEAAEQASIRNKYFDRAAAAFKRNDGATAKKMGALGREANERMKELHSKAANAIFATRNPPHVL---DVIDLHGLHVNEALERLPSALEGKHGR----IRILTGTGHHTKG-TGRARLRPAVKKWLKDNDYFFEEVVDANE-YVGSFIV 403
            +  E   P     G  WVSTG +V + YE+ R +AAE A  RNK+F  A  AF+R DG  A+ +   GRE N RMKE H +AA  IF  RNP   +     +DLHGLHV EA+E L   +     R    +R+LTGTGHH+KG T +ARL PAV+ +     Y F +V D +  +VG+  V
Sbjct:  460 IGDERYPPAVVGGGGEWVSTGDAVGKQYEQAREDAAELARARNKFFTSATEAFQRGDGLLARDLARRGRELNFRMKEKHRQAAEYIFGARNPGDQVFQRKTMDLHGLHVAEAVEVLDREMGALAARGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDV 640          
BLAST of Ggra2183.t1 vs. uniprot
Match: M2XTE2 (MutS family DNA mismatch repair protein MSH4 isoform 1 n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XTE2_GALSU)

HSP 1 Score: 125 bits (314), Expect = 2.200e-27
Identity = 80/178 (44.94%), Postives = 105/178 (58.99%), Query Frame = 0
Query:  235 EEIAPVSGDVGNVWVSTGRSVAELYEELRAEAAEQASIRNKYFDRAAAAFKRNDGATAKKMGALGREANERMKELHSKAANAIFATRNPPHVLDVIDLHGLHVNEA---LERLPSALEGKHGR-----IRILTGTGHHTKGTGR-ARLRPAVKKWLKDNDYFFEEVVDANEYVGSFIV 403
            +EI    G   N+WVSTG +V +LYE+ R +A E AS+RN+ F +AA A    +   A      G E N+ MK+LH +AA+AIF  RN  +   VIDLHGLHV EA   LER    LE +        + I+TG+GHHTKG    ARL PAV+ +L    Y FE + D N+Y G+F+V
Sbjct: 1091 KEIRLDKGTTKNIWVSTGTTVGDLYEKSRLQAKELASLRNQMFMQAARAASNGNKRAASDYARRGHEYNQIMKQLHEEAADAIFTERNS-NADFVIDLHGLHVKEAIVILERKFQELESRRSNESFQDVIIVTGSGHHTKGKKTPARLYPAVEHFLLSRHYSFEVLKDTNKYAGAFLV 1267          
BLAST of Ggra2183.t1 vs. uniprot
Match: D0MT46 (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=D0MT46_PHYIT)

HSP 1 Score: 124 bits (311), Expect = 2.590e-27
Identity = 81/199 (40.70%), Postives = 112/199 (56.28%), Query Frame = 0
Query:  219 NFVHGMQSVNDSPLAHEEIAPVSGDVGNV----WVSTGRSVAELYEELRAEAAEQASIRNKYFDRAAAAFKRNDGATAKKMGALGREANERMKELHSKAANAIFATRNPPHVL---DVIDLHGLHVNEALE----RLPSALEGKHGRIRILTGTGHHTKGT-GRARLRPAVKKWLKDNDYFFEEVVDANEYVGSFIVDI 405
            N  +GM+S    P       P+   +G+     WVSTG+SVA  Y ELR +A E A  RNK F  A  A++  + A AK +   G E N +MK  H  AA+ IF +RNPP+ L    ++DLHGLHV EA+E     LP   +     I ++TG+GHH+KG  G ARL PAV+++L    Y +  V D + +VG  +VD+
Sbjct:  396 NGSYGMESHRRMPPPPPTHRPLYRKIGSSDGPKWVSTGQSVATQYLELREQAYEMACARNKCFMGATQAYRNGNKALAKGLSKQGHEYNAKMKNFHFLAASEIFESRNPPNQLYMDRMMDLHGLHVAEAVEFLAQMLPKLADEGVDSIYLVTGSGHHSKGPDGNARLLPAVERFLAGEGYQYTPVADGSGFVGMLLVDL 594          
BLAST of Ggra2183.t1 vs. uniprot
Match: A0A2D4CHX0 (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CHX0_PYTIN)

HSP 1 Score: 124 bits (310), Expect = 3.710e-27
Identity = 77/183 (42.08%), Postives = 106/183 (57.92%), Query Frame = 0
Query:  231 PLAHEEIAPVSGDVGNVWVSTGRSVAELYEELRAEAAEQASIRNKYFDRAAAAFKRNDGATAKKMGALGREANERMKELHSKAANAIFATRNPPHVL---DVIDLHGLHVNEALERL----PSALEGKHGRIRILTGTGHHTKG-TGRARLRPAVKKWLKDNDYFFEEVVDANEYVGSFIVDI 405
            PL H+    V+G     W+STG +V+  Y +LR EA E A  RNK F  A  A++  + + A+ +   G E NE+MK+ H  AA+ IF  RNP   L    ++DLHGLHV EA+E L    PS  +     I ++TG+GHH+KG TG  RLRPAV+++L    Y F  V D   +VG  +VD+
Sbjct:  426 PLHHKTADAVAG---RRWLSTGAAVSAQYTQLREEAYELACARNKCFMNATRAYRSGNKSLARSLSQQGHEYNEKMKQCHYDAASRIFEMRNPRQQLYEDHLMDLHGLHVAEAVELLANLLPSLSDDGIEAIYVVTGSGHHSKGPTGNPRLRPAVERFLATEGYQFSPVADRQGFVGMLLVDL 605          
BLAST of Ggra2183.t1 vs. uniprot
Match: H3GJW5 (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJW5_PHYRM)

HSP 1 Score: 122 bits (307), Expect = 8.820e-27
Identity = 78/183 (42.62%), Postives = 105/183 (57.38%), Query Frame = 0
Query:  231 PLAHEEIAPVSGDVGNVWVSTGRSVAELYEELRAEAAEQASIRNKYFDRAAAAFKRNDGATAKKMGALGREANERMKELHSKAANAIFATRNPPHVL---DVIDLHGLHVNEALE----RLPSALEGKHGRIRILTGTGHHTKGT-GRARLRPAVKKWLKDNDYFFEEVVDANEYVGSFIVDI 405
            PL H+  A  S  +G  WVSTG SV+  Y ELR +A E A  RNK F  A  A++  + A AK +   G + N +MK  H  AA+ IF +RNPP  L    ++DLHGLHV EA+E     LP   +     I ++TG+GHH+KG  G ARL PAV+++L    Y +  V D   +VG  +VD+
Sbjct:  415 PLYHK--AGSSDSIGTKWVSTGDSVSTQYLELREQAYEMACARNKCFMGATQAYRNGNKALAKGLSKQGHDYNAKMKNFHFLAASEIFESRNPPSQLYMDRMMDLHGLHVAEAVEFLTQMLPKLADEGVDSIYLVTGSGHHSKGPDGNARLLPAVERFLGGEGYQYTPVADGAGFVGMLLVDL 595          
BLAST of Ggra2183.t1 vs. uniprot
Match: A0A0P1AEJ2 (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AEJ2_PLAHL)

HSP 1 Score: 121 bits (304), Expect = 1.830e-26
Identity = 76/187 (40.64%), Postives = 105/187 (56.15%), Query Frame = 0
Query:  227 VNDSPLAHEEIAPVSGDVGNVWVSTGRSVAELYEELRAEAAEQASIRNKYFDRAAAAFKRNDGATAKKMGALGREANERMKELHSKAANAIFATRNPPHVL---DVIDLHGLHVNEALE----RLPSALEGKHGRIRILTGTGHHTKGT-GRARLRPAVKKWLKDNDYFFEEVVDANEYVGSFIVDI 405
            V  SP  +  +   +G     WV+TG SV+  Y ELR +A E A  RNK F  A  A++  + A AK +   G E N +MK  H  AA+ IF +RNPP+ L    ++DLHGLHV E +E     LP   +     I ++TG+GHH+KG+ G ARL PAVK++L    Y +  V D   +VG  +VD+
Sbjct:  375 VPQSPPIYRSLYHKAGKNDVKWVTTGESVSSQYLELREQAHEMACARNKCFMGATQAYRNGNKALAKDLSRQGHEYNVKMKNFHFLAASEIFESRNPPNQLYMDRMMDLHGLHVAETVELLTQMLPKLADEGVDSIHLVTGSGHHSKGSNGNARLLPAVKQFLGAEGYQYTHVADGAGFVGMLLVDL 561          
The following BLAST results are available for this feature:
BLAST of Ggra2183.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J0G01.420e-16666.10Polyadenylate-binding protein-interacting protein ... [more]
A0A7S3EKS96.040e-3945.03Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A2P4XU031.520e-2844.26Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
G4ZFB73.130e-2843.72Uncharacterized protein n=18 Tax=Phytophthora TaxI... [more]
A0A6H5JKG27.250e-2843.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
M2XTE22.200e-2744.94MutS family DNA mismatch repair protein MSH4 isofo... [more]
D0MT462.590e-2740.70Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A2D4CHX03.710e-2742.08Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
H3GJW58.820e-2742.62Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A0P1AEJ21.830e-2640.64Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002625Smr domainSMARTSM00463SMR_2coord: 327..406
e-value: 1.9E-7
score: 40.7
IPR002625Smr domainPFAMPF01713Smrcoord: 330..391
e-value: 3.9E-10
score: 40.0
IPR002625Smr domainPROSITEPS50828SMRcoord: 330..406
score: 19.086273
IPR013899Domain of unknown function DUF1771SMARTSM01162DUF1771_2coord: 258..323
e-value: 1.9E-17
score: 74.0
IPR013899Domain of unknown function DUF1771PFAMPF08590DUF1771coord: 259..322
e-value: 2.7E-16
score: 59.7
NoneNo IPR availableGENE3D3.30.1370.110coord: 306..405
e-value: 1.8E-20
score: 74.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availablePANTHERPTHR46651:SF1POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 7coord: 246..390
NoneNo IPR availablePANTHERPTHR46651POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 7coord: 246..390
IPR009818Ataxin-2, C-terminalPFAMPF07145PAM2coord: 118..133
e-value: 7.0E-6
score: 25.4
IPR036063Smr domain superfamilySUPERFAMILY160443SMR domain-likecoord: 329..391

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:574236..575462 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2183.t1Ggra2183.t1Gracilaria gracilis GNS1m malemRNAtig00000900_pilon 574236..575462 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2183.t1 ID=Ggra2183.t1|Name=Ggra2183.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=409bp
MQHGAHDQSGINPKSVNSNENGTDYTTVDYVSSNFSSLSFTDNPFHSSYP
FCNNHQPTYPAYDDNTTFTSSPLSQIDFGSTHSQRLHPYPYPYSHEPASS
DVASYDITQPVQPVSPPAKSTLNAHAPEFVPSFAVLPAEEPLPADHPLYT
PPPVFANPETTVEHAVENFERQFPPLPGSKTSPTEKGKPVLRKALGWHEI
EHEQREKARWQKHLDVKHNFVHGMQSVNDSPLAHEEIAPVSGDVGNVWVS
TGRSVAELYEELRAEAAEQASIRNKYFDRAAAAFKRNDGATAKKMGALGR
EANERMKELHSKAANAIFATRNPPHVLDVIDLHGLHVNEALERLPSALEG
KHGRIRILTGTGHHTKGTGRARLRPAVKKWLKDNDYFFEEVVDANEYVGS
FIVDIENR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002625Smr_dom
IPR013899DUF1771
IPR009818Ataxin-2_C
IPR036063Smr_dom_sf