Ggra2067.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2067.t1
Unique NameGgra2067.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length437
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:30213..31605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr43593
PFAMsLipase_3
Max annot lvl2836|Bacillariophyta
Evalue3.7e-42
EggNOG OGsKOG4569@1|root,KOG4569@2759|Eukaryota,2XD1J@2836|Bacillariophyta
DescriptionLipase (class 3)
COG categoryI
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2067Ggra2067Gracilaria gracilis GNS1m malegenetig00000900_pilon 30213..31605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2067.t1Ggra2067.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 30213..31605 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2067.t1.start1Ggra2067.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 30213..30215 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2067.t1.CDS1Ggra2067.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 30213..31058 +
Ggra2067.t1.CDS2Ggra2067.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000900_pilon 31141..31605 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2067.t1.exon1Ggra2067.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 30213..31058 +
Ggra2067.t1.exon2Ggra2067.t1.exon2Gracilaria gracilis GNS1m maleexontig00000900_pilon 31141..31605 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2067.t1.intron1Ggra2067.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000900_pilon 31059..31140 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2067.t1.stop1Ggra2067.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 31603..31605 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2067.t1 ID=Ggra2067.t1|Name=Ggra2067.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=437bp
MASTQGAEPEPHDGQKSPTVYEEIHDMLSYASMMYLVAELRAMARQGTLQ
NCDAILSLPLTFGAISSIYEEHGQLLNTLHGENRHNLHGRVLQTMMSKKS
IDPEQPNGTKIVVFSDDDADELVYSIAVDYSTRNVVVAFRGTVTPTDITA
DIKTFQKKVPNPLRTKIPNPIDANTSNPVSAEKIDKTQPKFMKLHNGFYQ
YLFQQKTPEQKSKYELILEQASSILQKHKGFRLYVTGHSLGGALCTLFSS
YAALDPVLVDPVICYSFASPKLGTLSFRKVFQELEREGKLRLLRVANKDD
PVTVLPRDVGTILPADLNCAMQFVSLTQGNIYRHVGMGVLLYTDGTLKIF
HARRKTNYFRTLVSDWAKLWARGFYVCVKLFCCLLGRGENYRAYHGYPAY
FSRLEGNDNELQRFRLEELYSFFESGDKEVVKTRYW*
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spliced messenger RNA

>Ggra2067.t1 ID=Ggra2067.t1|Name=Ggra2067.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1311bp|location=Sequence derived from alignment at tig00000900_pilon:30213..31605+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCCACGCAAGGAGCCGAACCAGAGCCTCACGATGGGCAAAAAAG
TCCAACTGTGTACGAGGAGATCCATGATATGCTCAGCTATGCCTCCATGA
TGTATCTTGTCGCCGAACTCAGAGCCATGGCACGACAAGGCACACTGCAG
AATTGCGATGCGATTCTGAGCCTGCCCTTGACTTTTGGTGCGATTAGCAG
CATTTATGAGGAGCATGGTCAACTTCTGAATACGCTTCATGGAGAAAATC
GGCACAACCTTCACGGACGGGTTTTGCAAACTATGATGAGCAAGAAGTCA
ATCGACCCAGAACAACCCAACGGCACAAAGATCGTCGTCTTTAGTGACGA
TGATGCAGACGAACTGGTCTACTCCATTGCGGTCGACTACAGCACAAGAA
ATGTTGTGGTCGCATTTCGGGGAACGGTAACTCCCACGGATATTACCGCT
GATATCAAGACCTTCCAGAAGAAGGTCCCAAATCCTCTCCGAACCAAGAT
TCCGAACCCTATCGACGCCAACACTTCGAACCCCGTTTCTGCTGAGAAGA
TCGACAAAACGCAGCCAAAGTTCATGAAGCTTCACAACGGATTTTACCAG
TACCTCTTCCAACAGAAGACTCCAGAGCAAAAGTCCAAGTATGAGCTCAT
TCTAGAGCAAGCCAGTAGCATTCTACAGAAGCACAAGGGCTTCCGACTCT
ACGTAACGGGACACAGTCTTGGGGGAGCGCTTTGCACATTGTTCTCCTCC
TATGCGGCCCTAGATCCCGTCCTTGTCGACCCTGTCATTTGCTACAGTTT
TGCCTCTCCCAAGCTTGGTACTTTGTCCTTTCGCAAAGTGTTTCAGGAAT
TGGAACGCGAAGGCAAGCTGCGGCTCCTACGAGTGGCAAACAAGGACGAT
CCGGTAACTGTCTTGCCCAGGGACGTAGGCACAATCTTGCCTGCCGACCT
GAATTGCGCCATGCAGTTTGTCAGCTTGACTCAAGGAAACATCTACCGAC
ATGTTGGGATGGGAGTCCTCCTCTATACCGATGGCACCCTCAAGATCTTT
CACGCTCGAAGAAAAACGAATTACTTTCGCACTCTGGTAAGTGACTGGGC
CAAGCTCTGGGCAAGGGGCTTCTACGTCTGCGTGAAGCTGTTTTGTTGTT
TGCTGGGCCGTGGGGAGAACTATCGCGCCTACCATGGATATCCAGCGTAC
TTTAGCAGATTGGAGGGTAACGACAATGAGCTGCAGCGATTTCGCCTTGA
GGAGCTGTACTCCTTCTTTGAATCCGGTGACAAGGAAGTGGTGAAGACTA
GGTACTGGTAG
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protein sequence of Ggra2067.t1

>Ggra2067.t1 ID=Ggra2067.t1|Name=Ggra2067.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=437bp
MASTQGAEPEPHDGQKSPTVYEEIHDMLSYASMMYLVAELRAMARQGTLQ
NCDAILSLPLTFGAISSIYEEHGQLLNTLHGENRHNLHGRVLQTMMSKKS
IDPEQPNGTKIVVFSDDDADELVYSIAVDYSTRNVVVAFRGTVTPTDITA
DIKTFQKKVPNPLRTKIPNPIDANTSNPVSAEKIDKTQPKFMKLHNGFYQ
YLFQQKTPEQKSKYELILEQASSILQKHKGFRLYVTGHSLGGALCTLFSS
YAALDPVLVDPVICYSFASPKLGTLSFRKVFQELEREGKLRLLRVANKDD
PVTVLPRDVGTILPADLNCAMQFVSLTQGNIYRHVGMGVLLYTDGTLKIF
HARRKTNYFRTLVSDWAKLWARGFYVCVKLFCCLLGRGENYRAYHGYPAY
FSRLEGNDNELQRFRLEELYSFFESGDKEVVKTRYW*
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mRNA from alignment at tig00000900_pilon:30213..31605+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2067.t1 ID=Ggra2067.t1|Name=Ggra2067.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1393bp|location=Sequence derived from alignment at tig00000900_pilon:30213..31605+ (Gracilaria gracilis GNS1m male)
ATGGCGTCCACGCAAGGAGCCGAACCAGAGCCTCACGATGGGCAAAAAAG
TCCAACTGTGTACGAGGAGATCCATGATATGCTCAGCTATGCCTCCATGA
TGTATCTTGTCGCCGAACTCAGAGCCATGGCACGACAAGGCACACTGCAG
AATTGCGATGCGATTCTGAGCCTGCCCTTGACTTTTGGTGCGATTAGCAG
CATTTATGAGGAGCATGGTCAACTTCTGAATACGCTTCATGGAGAAAATC
GGCACAACCTTCACGGACGGGTTTTGCAAACTATGATGAGCAAGAAGTCA
ATCGACCCAGAACAACCCAACGGCACAAAGATCGTCGTCTTTAGTGACGA
TGATGCAGACGAACTGGTCTACTCCATTGCGGTCGACTACAGCACAAGAA
ATGTTGTGGTCGCATTTCGGGGAACGGTAACTCCCACGGATATTACCGCT
GATATCAAGACCTTCCAGAAGAAGGTCCCAAATCCTCTCCGAACCAAGAT
TCCGAACCCTATCGACGCCAACACTTCGAACCCCGTTTCTGCTGAGAAGA
TCGACAAAACGCAGCCAAAGTTCATGAAGCTTCACAACGGATTTTACCAG
TACCTCTTCCAACAGAAGACTCCAGAGCAAAAGTCCAAGTATGAGCTCAT
TCTAGAGCAAGCCAGTAGCATTCTACAGAAGCACAAGGGCTTCCGACTCT
ACGTAACGGGACACAGTCTTGGGGGAGCGCTTTGCACATTGTTCTCCTCC
TATGCGGCCCTAGATCCCGTCCTTGTCGACCCTGTCATTTGCTACAGTTT
TGCCTCTCCCAAGCTTGGTACTTTGTCCTTTCGCAAAGTGTTTCAGGTAA
GTCTTTGTTGCGAAGAGCGGCGATGCAGTTCGAATCCGTTCTCACTTACA
AATTGTTTCCCATGATCCGTCTTCCCAGGAATTGGAACGCGAAGGCAAGC
TGCGGCTCCTACGAGTGGCAAACAAGGACGATCCGGTAACTGTCTTGCCC
AGGGACGTAGGCACAATCTTGCCTGCCGACCTGAATTGCGCCATGCAGTT
TGTCAGCTTGACTCAAGGAAACATCTACCGACATGTTGGGATGGGAGTCC
TCCTCTATACCGATGGCACCCTCAAGATCTTTCACGCTCGAAGAAAAACG
AATTACTTTCGCACTCTGGTAAGTGACTGGGCCAAGCTCTGGGCAAGGGG
CTTCTACGTCTGCGTGAAGCTGTTTTGTTGTTTGCTGGGCCGTGGGGAGA
ACTATCGCGCCTACCATGGATATCCAGCGTACTTTAGCAGATTGGAGGGT
AACGACAATGAGCTGCAGCGATTTCGCCTTGAGGAGCTGTACTCCTTCTT
TGAATCCGGTGACAAGGAAGTGGTGAAGACTAGGTACTGGTAG
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Coding sequence (CDS) from alignment at tig00000900_pilon:30213..31605+

>Ggra2067.t1 ID=Ggra2067.t1|Name=Ggra2067.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1311bp|location=Sequence derived from alignment at tig00000900_pilon:30213..31605+ (Gracilaria gracilis GNS1m male)
ATGGCGTCCACGCAAGGAGCCGAACCAGAGCCTCACGATGGGCAAAAAAG
TCCAACTGTGTACGAGGAGATCCATGATATGCTCAGCTATGCCTCCATGA
TGTATCTTGTCGCCGAACTCAGAGCCATGGCACGACAAGGCACACTGCAG
AATTGCGATGCGATTCTGAGCCTGCCCTTGACTTTTGGTGCGATTAGCAG
CATTTATGAGGAGCATGGTCAACTTCTGAATACGCTTCATGGAGAAAATC
GGCACAACCTTCACGGACGGGTTTTGCAAACTATGATGAGCAAGAAGTCA
ATCGACCCAGAACAACCCAACGGCACAAAGATCGTCGTCTTTAGTGACGA
TGATGCAGACGAACTGGTCTACTCCATTGCGGTCGACTACAGCACAAGAA
ATGTTGTGGTCGCATTTCGGGGAACGGTAACTCCCACGGATATTACCGCT
GATATCAAGACCTTCCAGAAGAAGGTCCCAAATCCTCTCCGAACCAAGAT
TCCGAACCCTATCGACGCCAACACTTCGAACCCCGTTTCTGCTGAGAAGA
TCGACAAAACGCAGCCAAAGTTCATGAAGCTTCACAACGGATTTTACCAG
TACCTCTTCCAACAGAAGACTCCAGAGCAAAAGTCCAAGTATGAGCTCAT
TCTAGAGCAAGCCAGTAGCATTCTACAGAAGCACAAGGGCTTCCGACTCT
ACGTAACGGGACACAGTCTTGGGGGAGCGCTTTGCACATTGTTCTCCTCC
TATGCGGCCCTAGATCCCGTCCTTGTCGACCCTGTCATTTGCTACAGTTT
TGCCTCTCCCAAGCTTGGTACTTTGTCCTTTCGCAAAGTGTTTCAGGAAT
TGGAACGCGAAGGCAAGCTGCGGCTCCTACGAGTGGCAAACAAGGACGAT
CCGGTAACTGTCTTGCCCAGGGACGTAGGCACAATCTTGCCTGCCGACCT
GAATTGCGCCATGCAGTTTGTCAGCTTGACTCAAGGAAACATCTACCGAC
ATGTTGGGATGGGAGTCCTCCTCTATACCGATGGCACCCTCAAGATCTTT
CACGCTCGAAGAAAAACGAATTACTTTCGCACTCTGGTAAGTGACTGGGC
CAAGCTCTGGGCAAGGGGCTTCTACGTCTGCGTGAAGCTGTTTTGTTGTT
TGCTGGGCCGTGGGGAGAACTATCGCGCCTACCATGGATATCCAGCGTAC
TTTAGCAGATTGGAGGGTAACGACAATGAGCTGCAGCGATTTCGCCTTGA
GGAGCTGTACTCCTTCTTTGAATCCGGTGACAAGGAAGTGGTGAAGACTA
GGTACTGGTAG
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