Ggra2240.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2240.t1
Unique NameGgra2240.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length345
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:817389..818423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42099.EPrPV00000016339
PFAMsPP2C
Max annot lvl121069|Pythiales
Evalue4.11e-29
EggNOG OGsCOG0631@1|root,KOG0698@2759|Eukaryota,1MDVZ@121069|Pythiales
DescriptionSigma factor PP2C-like phosphatases
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2240Ggra2240Gracilaria gracilis GNS1m malegenetig00000900_pilon 817389..818423 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2240.t1.stop1Ggra2240.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 817389..817391 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2240.t1.CDS1Ggra2240.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 817389..818423 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2240.t1.exon1Ggra2240.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 817389..818423 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2240.t1.start1Ggra2240.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 818421..818423 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2240.t1Ggra2240.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 817389..818423 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2240.t1 ID=Ggra2240.t1|Name=Ggra2240.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=345bp
MSANVPPPVPLSGAMSPLSDAASLPLPHFPLTLKPCATRKRPRPKMNLPP
FDFVPASNVSSLPPSFYPHAPAPNHSDAVVGLWTNHALSACASRRGSRRA
HNEDRVFCDHVNRIYGVCDGHGAGAVPHAPKEQVAANTVKQLLPAMLLSM
SVVDAFEKIDRMVLNKLPDRCIIGSTVALVRIFDDTRVMQVAHVGDSRVL
IIGADGRARTLTDDHSPNRADEMARIERDGGYVLRGRVNDILAVSRAIGD
SLVKYVVPATPDVTQYALRDDDQLVLIGTDGLWDMIDGAQVAALCQQLAQ
RKGAVAVPADLQHAADAILAKAREFGRTDDSTVVLVDVRKSARG*
back to top

spliced messenger RNA

>Ggra2240.t1 ID=Ggra2240.t1|Name=Ggra2240.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1035bp|location=Sequence derived from alignment at tig00000900_pilon:817389..818423- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCCAACGTGCCGCCGCCCGTGCCGCTCAGCGGCGCTATGTCGCC
GCTGTCGGACGCCGCGTCGCTACCGCTTCCACACTTTCCACTCACGTTGA
AGCCGTGCGCCACGCGCAAGCGCCCGCGGCCCAAGATGAACCTGCCTCCG
TTTGATTTCGTGCCCGCTTCCAACGTGTCTTCGTTGCCGCCTTCGTTCTA
CCCGCACGCGCCGGCGCCCAACCACAGCGACGCCGTGGTCGGGCTGTGGA
CCAACCACGCACTGTCGGCGTGCGCGAGTCGCCGCGGCTCGCGCCGCGCC
CACAACGAGGATCGCGTGTTTTGTGACCATGTGAACCGCATCTACGGCGT
GTGCGACGGCCATGGTGCTGGCGCCGTGCCGCACGCGCCCAAGGAGCAGG
TGGCGGCCAACACGGTCAAGCAGTTGCTGCCGGCCATGTTGTTGAGCATG
TCGGTGGTGGACGCGTTTGAGAAGATTGATCGTATGGTGCTCAACAAGCT
GCCCGATCGCTGTATCATAGGAAGCACGGTGGCGCTTGTGCGAATCTTTG
ACGACACGCGCGTGATGCAGGTGGCGCATGTGGGCGACTCGCGCGTGCTC
ATCATCGGCGCGGACGGGCGTGCGCGCACGCTGACGGACGATCACTCGCC
CAACCGCGCGGACGAGATGGCGCGCATCGAGCGCGACGGCGGCTACGTGC
TGAGAGGAAGAGTGAACGACATCCTGGCGGTGAGTCGCGCCATTGGCGAT
AGCTTGGTCAAGTACGTGGTACCCGCCACGCCGGATGTGACGCAGTACGC
GCTGAGAGACGACGACCAGCTGGTGCTTATCGGCACGGACGGGCTGTGGG
ACATGATTGACGGCGCGCAGGTGGCGGCGCTGTGCCAGCAGCTGGCGCAG
CGAAAGGGCGCGGTGGCGGTGCCCGCGGACTTGCAGCACGCGGCGGACGC
CATCCTCGCAAAGGCGCGCGAGTTTGGCAGAACGGACGATAGCACGGTGG
TGCTGGTGGACGTGCGGAAGAGCGCGCGCGGGTGA
back to top

protein sequence of Ggra2240.t1

>Ggra2240.t1 ID=Ggra2240.t1|Name=Ggra2240.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=345bp
MSANVPPPVPLSGAMSPLSDAASLPLPHFPLTLKPCATRKRPRPKMNLPP
FDFVPASNVSSLPPSFYPHAPAPNHSDAVVGLWTNHALSACASRRGSRRA
HNEDRVFCDHVNRIYGVCDGHGAGAVPHAPKEQVAANTVKQLLPAMLLSM
SVVDAFEKIDRMVLNKLPDRCIIGSTVALVRIFDDTRVMQVAHVGDSRVL
IIGADGRARTLTDDHSPNRADEMARIERDGGYVLRGRVNDILAVSRAIGD
SLVKYVVPATPDVTQYALRDDDQLVLIGTDGLWDMIDGAQVAALCQQLAQ
RKGAVAVPADLQHAADAILAKAREFGRTDDSTVVLVDVRKSARG*
back to top

mRNA from alignment at tig00000900_pilon:817389..818423-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2240.t1 ID=Ggra2240.t1|Name=Ggra2240.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1035bp|location=Sequence derived from alignment at tig00000900_pilon:817389..818423- (Gracilaria gracilis GNS1m male)
ATGTCGGCCAACGTGCCGCCGCCCGTGCCGCTCAGCGGCGCTATGTCGCC
GCTGTCGGACGCCGCGTCGCTACCGCTTCCACACTTTCCACTCACGTTGA
AGCCGTGCGCCACGCGCAAGCGCCCGCGGCCCAAGATGAACCTGCCTCCG
TTTGATTTCGTGCCCGCTTCCAACGTGTCTTCGTTGCCGCCTTCGTTCTA
CCCGCACGCGCCGGCGCCCAACCACAGCGACGCCGTGGTCGGGCTGTGGA
CCAACCACGCACTGTCGGCGTGCGCGAGTCGCCGCGGCTCGCGCCGCGCC
CACAACGAGGATCGCGTGTTTTGTGACCATGTGAACCGCATCTACGGCGT
GTGCGACGGCCATGGTGCTGGCGCCGTGCCGCACGCGCCCAAGGAGCAGG
TGGCGGCCAACACGGTCAAGCAGTTGCTGCCGGCCATGTTGTTGAGCATG
TCGGTGGTGGACGCGTTTGAGAAGATTGATCGTATGGTGCTCAACAAGCT
GCCCGATCGCTGTATCATAGGAAGCACGGTGGCGCTTGTGCGAATCTTTG
ACGACACGCGCGTGATGCAGGTGGCGCATGTGGGCGACTCGCGCGTGCTC
ATCATCGGCGCGGACGGGCGTGCGCGCACGCTGACGGACGATCACTCGCC
CAACCGCGCGGACGAGATGGCGCGCATCGAGCGCGACGGCGGCTACGTGC
TGAGAGGAAGAGTGAACGACATCCTGGCGGTGAGTCGCGCCATTGGCGAT
AGCTTGGTCAAGTACGTGGTACCCGCCACGCCGGATGTGACGCAGTACGC
GCTGAGAGACGACGACCAGCTGGTGCTTATCGGCACGGACGGGCTGTGGG
ACATGATTGACGGCGCGCAGGTGGCGGCGCTGTGCCAGCAGCTGGCGCAG
CGAAAGGGCGCGGTGGCGGTGCCCGCGGACTTGCAGCACGCGGCGGACGC
CATCCTCGCAAAGGCGCGCGAGTTTGGCAGAACGGACGATAGCACGGTGG
TGCTGGTGGACGTGCGGAAGAGCGCGCGCGGGTGA
back to top

Coding sequence (CDS) from alignment at tig00000900_pilon:817389..818423-

>Ggra2240.t1 ID=Ggra2240.t1|Name=Ggra2240.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1035bp|location=Sequence derived from alignment at tig00000900_pilon:817389..818423- (Gracilaria gracilis GNS1m male)
ATGTCGGCCAACGTGCCGCCGCCCGTGCCGCTCAGCGGCGCTATGTCGCC
GCTGTCGGACGCCGCGTCGCTACCGCTTCCACACTTTCCACTCACGTTGA
AGCCGTGCGCCACGCGCAAGCGCCCGCGGCCCAAGATGAACCTGCCTCCG
TTTGATTTCGTGCCCGCTTCCAACGTGTCTTCGTTGCCGCCTTCGTTCTA
CCCGCACGCGCCGGCGCCCAACCACAGCGACGCCGTGGTCGGGCTGTGGA
CCAACCACGCACTGTCGGCGTGCGCGAGTCGCCGCGGCTCGCGCCGCGCC
CACAACGAGGATCGCGTGTTTTGTGACCATGTGAACCGCATCTACGGCGT
GTGCGACGGCCATGGTGCTGGCGCCGTGCCGCACGCGCCCAAGGAGCAGG
TGGCGGCCAACACGGTCAAGCAGTTGCTGCCGGCCATGTTGTTGAGCATG
TCGGTGGTGGACGCGTTTGAGAAGATTGATCGTATGGTGCTCAACAAGCT
GCCCGATCGCTGTATCATAGGAAGCACGGTGGCGCTTGTGCGAATCTTTG
ACGACACGCGCGTGATGCAGGTGGCGCATGTGGGCGACTCGCGCGTGCTC
ATCATCGGCGCGGACGGGCGTGCGCGCACGCTGACGGACGATCACTCGCC
CAACCGCGCGGACGAGATGGCGCGCATCGAGCGCGACGGCGGCTACGTGC
TGAGAGGAAGAGTGAACGACATCCTGGCGGTGAGTCGCGCCATTGGCGAT
AGCTTGGTCAAGTACGTGGTACCCGCCACGCCGGATGTGACGCAGTACGC
GCTGAGAGACGACGACCAGCTGGTGCTTATCGGCACGGACGGGCTGTGGG
ACATGATTGACGGCGCGCAGGTGGCGGCGCTGTGCCAGCAGCTGGCGCAG
CGAAAGGGCGCGGTGGCGGTGCCCGCGGACTTGCAGCACGCGGCGGACGC
CATCCTCGCAAAGGCGCGCGAGTTTGGCAGAACGGACGATAGCACGGTGG
TGCTGGTGGACGTGCGGAAGAGCGCGCGCGGGTGA
back to top