Ggra2116.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra2116.t1
Unique Name	Ggra2116.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	577

Homology

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BLAST of Ggra2116.t1 vs. uniprot
Match: A0A2V3IZZ8 (Translocase of chloroplast 33, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZZ8_9FLOR)

HSP 1 Score: 371 bits (952), Expect = 6.750e-118
Identity = 238/562 (42.35%), Postives = 311/562 (55.34%), Query Frame = 0

Query:   14 LQPLRFDPPLRVVVTGRAHAGKTALVAHLRRYA-SPRRAVAAPRARHARDHALEAEXXXXXXXXXXXXXXXXXXXXXXXXXXRSRRRLPFLLLRACNALARALPTGAHTRRCALHHELALTGGS---LRVWDSVGEYGVSAVAADADARLMDVLLFVTRLDASRVANYDREHLSYLCHLFGQHVLHSVVFVLTRGASLPPLNLSFAEFVTLRSDLLYLHVKHAFHPVQLAGGVGIEHAPDLIQ-----------------------------------------------QHQQQHDDHQQQP---LTDAALKKLQDSITRDWQRHKPTPAVKKLCSILLNDDSTDAGSTSALPSTFLDDLFLSAVYPLDRRVFVDPPRPPTVVVELAESAPTNHHGHIVLPDGSPWIHSLVDAMVTTANRVRAERQPEAQRXXXXX------QELYRPEPLNWWRRLHREIVCGGIRTAVIGAAMLYIGAFTYSEMIDRHRRWREAQDDGDDVLMKLDNAEYERLTKPDPGTDGSVILSNEPEPVEEEQLKDEEKQFFGSEQPEEIYSEPQ 515
            L+PL  DPPLR+VVTGR  AGKT LV+HL+    S +R +     R   D AL                                    FL+ R    L   +      ++ A  HEL L       L +WDS  E GV AV AD +A  +DVLLFVTRLDASRV  YD++HL  L  LFG+ +LH +VFVLTRG++LPP+NL+F EFV +RSD+LY + K  F PVQ++GGVGIE+APDLI+                                               QH +Q  +    P   LT A LKKL+  IT+DW   KP P+VKK+  +LL+D+  DA S + +  T +DD++ S VYPLDRRVF DPPRP  VVVE+A     N  G  +LP+   WIH+LV A+  TA  VR +R  EAQRXXXXX      + + RP    W   L RE + G +R  +    ++Y+G   Y ++ +R R+W+EAQDD D VL++LD+ EYERLTKPD GTDGSVIL + P   EEE+LKD EK+FFG  + E+++ + Q
Sbjct:    8 LRPLDLDPPLRIVVTGRKGAGKTTLVSHLKALVPSVQRPLPLSLRRRPHDRAL------------------------------------FLITRLVEILHNVVSQHIPDQKTATRHELDLDESGKKQLWIWDSNDENGVVAVGADQEAAQIDVLLFVTRLDASRVGKYDKKHLIVLRKLFGEQILHRIVFVLTRGSALPPINLNFNEFVGVRSDMLYAYAKEVFKPVQVSGGVGIEYAPDLIEEELRKRALIEQTDLEPISSDEAHETEETAQGNVSENGEMGTSSTAEPQHLEQPSEATNSPVQALTKADLKKLEKRITQDWLNTKPRPSVKKMFEVLLHDEGNDASSVTGMADTLIDDIYASGVYPLDRRVFTDPPRPRCVVVEMAHDCAINEAGEKLLPNKIAWIHTLVGAIAQTAKEVRRKR--EAQRXXXXXXXXXXEKAVSRPGRFKWLNDLRREFLRGSLRMVLTQFVLVYVGMVVYLKVEERRRKWKEAQDD-DSVLLELDDEEYERLTKPDEGTDGSVILESGPIREEEEELKDAEKEFFGVREREKLFEDKQ 530

The following BLAST results are available for this feature:

BLAST of Ggra2116.t1 vs. uniprot

BLAST of Ggra2116.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IZZ8	6.750e-118	42.35	Translocase of chloroplast 33, chloroplastic n=1 T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 4..286 e-value: 3.3E-9 score: 38.5
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 18..246
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 465..555
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 536..550
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 517..532
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..418
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 439..576
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 419..438

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000900_pilon	contig	tig00000900_pilon:330976..332706 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2116.t1	Ggra2116.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000900_pilon 330976..332706 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra2116.t1 ID=Ggra2116.t1|Name=Ggra2116.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=577bp
MDAHERERERERVLQPLRFDPPLRVVVTGRAHAGKTALVAHLRRYASPRR
AVAAPRARHARDHALEAEAQAPAAAEAAAAERAAHRAVQFQAQRRSRRRL
PFLLLRACNALARALPTGAHTRRCALHHELALTGGSLRVWDSVGEYGVSA
VAADADARLMDVLLFVTRLDASRVANYDREHLSYLCHLFGQHVLHSVVFV
LTRGASLPPLNLSFAEFVTLRSDLLYLHVKHAFHPVQLAGGVGIEHAPDL
IQQHQQQHDDHQQQPLTDAALKKLQDSITRDWQRHKPTPAVKKLCSILLN
DDSTDAGSTSALPSTFLDDLFLSAVYPLDRRVFVDPPRPPTVVVELAESA
PTNHHGHIVLPDGSPWIHSLVDAMVTTANRVRAERQPEAQRQRQQQQELY
RPEPLNWWRRLHREIVCGGIRTAVIGAAMLYIGAFTYSEMIDRHRRWREA
QDDGDDVLMKLDNAEYERLTKPDPGTDGSVILSNEPEPVEEEQLKDEEKQ
FFGSEQPEEIYSEPQANGEKKPSQSHQQGAEQKPPETKGGDVHIDWDNMD
GDSYSDTYSLENESKWKHLVPKDTNW*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase