Ggra2116.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2116.t1
Unique NameGgra2116.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length577
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:330976..332706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4155.Migut.F00555.1.p
PFAMsAIG1
Max annot lvl35493|Streptophyta
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006605,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0009507,GO:0009526,GO:0009527,GO:0009536,GO:0009707,GO:0009941,GO:0015031,GO:0015833,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019750,GO:0019867,GO:0031090,GO:0031967,GO:0031968,GO:0031969,GO:0031975,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033036,GO:0033365,GO:0034613,GO:0035639,GO:0036094,GO:0042170,GO:0042802,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045036,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051644,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072596,GO:0072598,GO:0097159,GO:0097367,GO:0098588,GO:0098805,GO:1901265,GO:1901363
Evalue6.04e-05
EggNOG OGs2CMZ1@1|root,2QSV2@2759|Eukaryota,37P6W@33090|Viridiplantae,3GC47@35493|Streptophyta,44HMY@71274|asterids
DescriptionGTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis
COG categoryF
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2116Ggra2116Gracilaria gracilis GNS1m malegenetig00000900_pilon 330976..332706 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2116.t1.start1Ggra2116.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 330976..330978 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2116.t1.CDS1Ggra2116.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 330976..332706 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2116.t1.exon1Ggra2116.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 330976..332706 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2116.t1.stop1Ggra2116.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 332704..332706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2116.t1Ggra2116.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 330976..332706 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2116.t1 ID=Ggra2116.t1|Name=Ggra2116.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=577bp
MDAHERERERERVLQPLRFDPPLRVVVTGRAHAGKTALVAHLRRYASPRR
AVAAPRARHARDHALEAEAQAPAAAEAAAAERAAHRAVQFQAQRRSRRRL
PFLLLRACNALARALPTGAHTRRCALHHELALTGGSLRVWDSVGEYGVSA
VAADADARLMDVLLFVTRLDASRVANYDREHLSYLCHLFGQHVLHSVVFV
LTRGASLPPLNLSFAEFVTLRSDLLYLHVKHAFHPVQLAGGVGIEHAPDL
IQQHQQQHDDHQQQPLTDAALKKLQDSITRDWQRHKPTPAVKKLCSILLN
DDSTDAGSTSALPSTFLDDLFLSAVYPLDRRVFVDPPRPPTVVVELAESA
PTNHHGHIVLPDGSPWIHSLVDAMVTTANRVRAERQPEAQRQRQQQQELY
RPEPLNWWRRLHREIVCGGIRTAVIGAAMLYIGAFTYSEMIDRHRRWREA
QDDGDDVLMKLDNAEYERLTKPDPGTDGSVILSNEPEPVEEEQLKDEEKQ
FFGSEQPEEIYSEPQANGEKKPSQSHQQGAEQKPPETKGGDVHIDWDNMD
GDSYSDTYSLENESKWKHLVPKDTNW*
back to top

spliced messenger RNA

>Ggra2116.t1 ID=Ggra2116.t1|Name=Ggra2116.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1731bp|location=Sequence derived from alignment at tig00000900_pilon:330976..332706+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCCCAcgagcgcgagcgcgagcgcgagcgcgTGCTGCAGCCGCT
GCGCTTCGACCCGCCACTGCGTGTCGTAGTCACCGGCCGCGCGCACGCGG
GCAAGACCGCGCTCGTGGCGCATCTGCGGCGCTACGCCTCGCCGCGGCGC
GCTGTAGCTGCGCCGCGCGCGCGCCACGCGCGCGACCACGCGCTGGAGGC
GGAGGCGCAGGCGCCGGCGGCGGCGGAGGCGGCGGCGGCGGAGCGCGCGG
CGCACCGCGCGGTGCAGTTTCAAGCGCAGCGCCGCTCGAGGCGGCGGCTG
CCGTTCCTGCTGTTGCGCGCGTGCAACGCGCTGGCGCGCGCGCTGCCCAC
GGGCGCGCACACGCGCCGCTGCGCGCTGCACCACGAGCTGGCGCTGACGG
GCGGCTCGCTGCGCGTGTGGGACAGCGTGGGCGAGTACGGCGTGTCCGCC
GTCGCCGCCGATGCGGACGCGCGGCTGATGGACGTGTTGCTGTTTGTGAC
GCGACTGGATGCTTCGCGCGTCGCCAACTATGATAGGGAGCACTTGTCCT
ACCTGTGTCACCTGTTCGGCCAACACGTGTTGCACTCCGTCGTGTTCGTG
CTCACCAGGGGCGCTTCGTTGCCGCCGCTCAATCTTTCCTTTGCCGAGTT
TGTCACCCTCAGGTCCGATCTTCTCTACCTGCACGTCAAGCACGCCTTCC
ACCCCGTGCAGCTTGCGGGCGGCGTGGGTATCGAGCACGCCCCGGACCTC
ATAcagcaacaccagcagcagcacgatgatcaccagcaacagccgcTTAC
GGACGCCGCGCTCAAAAAGCTTCAAGACTCCATCACGCGCGACTGGCAAC
GTCACAAGCCCACCCCCGCCGTCAAAAAGCTGTGCTCCATCCTCCTCAAC
GACGACTCCACCGACGCGGGCAGCACCTCCGCCCTGCCCTCCACCTTCCT
GGACGACCTCTTTCTGTCCGCCGTCTACCCGCTGGACAGGCGCGTGTTCG
TCGATCCGCCGCGCCCGCCCACCGTCGTCGTCGAGCTGGCGGAAAGCGCG
CCCACAAATCACCATGGTCACATAGTGCTGCCGGATGGCTCGCCGTGGAT
CCACTCGCTTGTTGACGCCATGGTCACCACGGCCAACCGCGTGCGGGCAG
AGCGCCAGCCGGAAGCTCAACGTCAACGCCAGCAGCAGCAGGAGCTGTAC
AGGCCGGAGCCTCTCAACTGGTGGCGTCGTTTGCACCGCGAGATTGTGTG
CGGCGGCATCAGAACCGCCGTCATCGGTGCGGCTATGTTGTACATTGGCG
CGTTCACGTACTCGGAAATGATCGACAGGCATCGCAGATGGAGGGAAGCG
CAGgatgatggtgatgatgtgttgatgaAACTGGATAATGCCGAGTATGA
ACGCTTGACAAAACCAGACCCTGGTACTGATGGCTCCGTCATTCTCAGCA
ACGAGCCGGAACCGGTGGAGGAGGAACAGTTGAAGGACGAAGAAAAGCAG
TTTTTCGGTTCGGAACAGCCGGAGGAAATATACAGTGAACCGCAAGCGAA
CGGTGAAAAGAAACCCTCACAATCTCATCAGCAAGGTGCAGAGCAGAAAC
CACCAGAGACCAAAGGAGGTGATGTGCACATCGATTGGGACAATATGGAC
GGAGACTCGTACTCTGATACTTACTCGCTCGAGAACGAAAGCAAATGGAA
GCATCTAGTTCCGAAGGACACTAACTGGTAA
back to top

protein sequence of Ggra2116.t1

>Ggra2116.t1 ID=Ggra2116.t1|Name=Ggra2116.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=577bp
MDAHERERERERVLQPLRFDPPLRVVVTGRAHAGKTALVAHLRRYASPRR
AVAAPRARHARDHALEAEAQAPAAAEAAAAERAAHRAVQFQAQRRSRRRL
PFLLLRACNALARALPTGAHTRRCALHHELALTGGSLRVWDSVGEYGVSA
VAADADARLMDVLLFVTRLDASRVANYDREHLSYLCHLFGQHVLHSVVFV
LTRGASLPPLNLSFAEFVTLRSDLLYLHVKHAFHPVQLAGGVGIEHAPDL
IQQHQQQHDDHQQQPLTDAALKKLQDSITRDWQRHKPTPAVKKLCSILLN
DDSTDAGSTSALPSTFLDDLFLSAVYPLDRRVFVDPPRPPTVVVELAESA
PTNHHGHIVLPDGSPWIHSLVDAMVTTANRVRAERQPEAQRQRQQQQELY
RPEPLNWWRRLHREIVCGGIRTAVIGAAMLYIGAFTYSEMIDRHRRWREA
QDDGDDVLMKLDNAEYERLTKPDPGTDGSVILSNEPEPVEEEQLKDEEKQ
FFGSEQPEEIYSEPQANGEKKPSQSHQQGAEQKPPETKGGDVHIDWDNMD
GDSYSDTYSLENESKWKHLVPKDTNW*
back to top

mRNA from alignment at tig00000900_pilon:330976..332706+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2116.t1 ID=Ggra2116.t1|Name=Ggra2116.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1731bp|location=Sequence derived from alignment at tig00000900_pilon:330976..332706+ (Gracilaria gracilis GNS1m male)
ATGGACGCCCAcgagcgcgagcgcgagcgcgagcgcgTGCTGCAGCCGCT
GCGCTTCGACCCGCCACTGCGTGTCGTAGTCACCGGCCGCGCGCACGCGG
GCAAGACCGCGCTCGTGGCGCATCTGCGGCGCTACGCCTCGCCGCGGCGC
GCTGTAGCTGCGCCGCGCGCGCGCCACGCGCGCGACCACGCGCTGGAGGC
GGAGGCGCAGGCGCCGGCGGCGGCGGAGGCGGCGGCGGCGGAGCGCGCGG
CGCACCGCGCGGTGCAGTTTCAAGCGCAGCGCCGCTCGAGGCGGCGGCTG
CCGTTCCTGCTGTTGCGCGCGTGCAACGCGCTGGCGCGCGCGCTGCCCAC
GGGCGCGCACACGCGCCGCTGCGCGCTGCACCACGAGCTGGCGCTGACGG
GCGGCTCGCTGCGCGTGTGGGACAGCGTGGGCGAGTACGGCGTGTCCGCC
GTCGCCGCCGATGCGGACGCGCGGCTGATGGACGTGTTGCTGTTTGTGAC
GCGACTGGATGCTTCGCGCGTCGCCAACTATGATAGGGAGCACTTGTCCT
ACCTGTGTCACCTGTTCGGCCAACACGTGTTGCACTCCGTCGTGTTCGTG
CTCACCAGGGGCGCTTCGTTGCCGCCGCTCAATCTTTCCTTTGCCGAGTT
TGTCACCCTCAGGTCCGATCTTCTCTACCTGCACGTCAAGCACGCCTTCC
ACCCCGTGCAGCTTGCGGGCGGCGTGGGTATCGAGCACGCCCCGGACCTC
ATAcagcaacaccagcagcagcacgatgatcaccagcaacagccgcTTAC
GGACGCCGCGCTCAAAAAGCTTCAAGACTCCATCACGCGCGACTGGCAAC
GTCACAAGCCCACCCCCGCCGTCAAAAAGCTGTGCTCCATCCTCCTCAAC
GACGACTCCACCGACGCGGGCAGCACCTCCGCCCTGCCCTCCACCTTCCT
GGACGACCTCTTTCTGTCCGCCGTCTACCCGCTGGACAGGCGCGTGTTCG
TCGATCCGCCGCGCCCGCCCACCGTCGTCGTCGAGCTGGCGGAAAGCGCG
CCCACAAATCACCATGGTCACATAGTGCTGCCGGATGGCTCGCCGTGGAT
CCACTCGCTTGTTGACGCCATGGTCACCACGGCCAACCGCGTGCGGGCAG
AGCGCCAGCCGGAAGCTCAACGTCAACGCCAGCAGCAGCAGGAGCTGTAC
AGGCCGGAGCCTCTCAACTGGTGGCGTCGTTTGCACCGCGAGATTGTGTG
CGGCGGCATCAGAACCGCCGTCATCGGTGCGGCTATGTTGTACATTGGCG
CGTTCACGTACTCGGAAATGATCGACAGGCATCGCAGATGGAGGGAAGCG
CAGgatgatggtgatgatgtgttgatgaAACTGGATAATGCCGAGTATGA
ACGCTTGACAAAACCAGACCCTGGTACTGATGGCTCCGTCATTCTCAGCA
ACGAGCCGGAACCGGTGGAGGAGGAACAGTTGAAGGACGAAGAAAAGCAG
TTTTTCGGTTCGGAACAGCCGGAGGAAATATACAGTGAACCGCAAGCGAA
CGGTGAAAAGAAACCCTCACAATCTCATCAGCAAGGTGCAGAGCAGAAAC
CACCAGAGACCAAAGGAGGTGATGTGCACATCGATTGGGACAATATGGAC
GGAGACTCGTACTCTGATACTTACTCGCTCGAGAACGAAAGCAAATGGAA
GCATCTAGTTCCGAAGGACACTAACTGGTAA
back to top

Coding sequence (CDS) from alignment at tig00000900_pilon:330976..332706+

>Ggra2116.t1 ID=Ggra2116.t1|Name=Ggra2116.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1731bp|location=Sequence derived from alignment at tig00000900_pilon:330976..332706+ (Gracilaria gracilis GNS1m male)
ATGGACGCCCAcgagcgcgagcgcgagcgcgagcgcgTGCTGCAGCCGCT
GCGCTTCGACCCGCCACTGCGTGTCGTAGTCACCGGCCGCGCGCACGCGG
GCAAGACCGCGCTCGTGGCGCATCTGCGGCGCTACGCCTCGCCGCGGCGC
GCTGTAGCTGCGCCGCGCGCGCGCCACGCGCGCGACCACGCGCTGGAGGC
GGAGGCGCAGGCGCCGGCGGCGGCGGAGGCGGCGGCGGCGGAGCGCGCGG
CGCACCGCGCGGTGCAGTTTCAAGCGCAGCGCCGCTCGAGGCGGCGGCTG
CCGTTCCTGCTGTTGCGCGCGTGCAACGCGCTGGCGCGCGCGCTGCCCAC
GGGCGCGCACACGCGCCGCTGCGCGCTGCACCACGAGCTGGCGCTGACGG
GCGGCTCGCTGCGCGTGTGGGACAGCGTGGGCGAGTACGGCGTGTCCGCC
GTCGCCGCCGATGCGGACGCGCGGCTGATGGACGTGTTGCTGTTTGTGAC
GCGACTGGATGCTTCGCGCGTCGCCAACTATGATAGGGAGCACTTGTCCT
ACCTGTGTCACCTGTTCGGCCAACACGTGTTGCACTCCGTCGTGTTCGTG
CTCACCAGGGGCGCTTCGTTGCCGCCGCTCAATCTTTCCTTTGCCGAGTT
TGTCACCCTCAGGTCCGATCTTCTCTACCTGCACGTCAAGCACGCCTTCC
ACCCCGTGCAGCTTGCGGGCGGCGTGGGTATCGAGCACGCCCCGGACCTC
ATAcagcaacaccagcagcagcacgatgatcaccagcaacagccgcTTAC
GGACGCCGCGCTCAAAAAGCTTCAAGACTCCATCACGCGCGACTGGCAAC
GTCACAAGCCCACCCCCGCCGTCAAAAAGCTGTGCTCCATCCTCCTCAAC
GACGACTCCACCGACGCGGGCAGCACCTCCGCCCTGCCCTCCACCTTCCT
GGACGACCTCTTTCTGTCCGCCGTCTACCCGCTGGACAGGCGCGTGTTCG
TCGATCCGCCGCGCCCGCCCACCGTCGTCGTCGAGCTGGCGGAAAGCGCG
CCCACAAATCACCATGGTCACATAGTGCTGCCGGATGGCTCGCCGTGGAT
CCACTCGCTTGTTGACGCCATGGTCACCACGGCCAACCGCGTGCGGGCAG
AGCGCCAGCCGGAAGCTCAACGTCAACGCCAGCAGCAGCAGGAGCTGTAC
AGGCCGGAGCCTCTCAACTGGTGGCGTCGTTTGCACCGCGAGATTGTGTG
CGGCGGCATCAGAACCGCCGTCATCGGTGCGGCTATGTTGTACATTGGCG
CGTTCACGTACTCGGAAATGATCGACAGGCATCGCAGATGGAGGGAAGCG
CAGgatgatggtgatgatgtgttgatgaAACTGGATAATGCCGAGTATGA
ACGCTTGACAAAACCAGACCCTGGTACTGATGGCTCCGTCATTCTCAGCA
ACGAGCCGGAACCGGTGGAGGAGGAACAGTTGAAGGACGAAGAAAAGCAG
TTTTTCGGTTCGGAACAGCCGGAGGAAATATACAGTGAACCGCAAGCGAA
CGGTGAAAAGAAACCCTCACAATCTCATCAGCAAGGTGCAGAGCAGAAAC
CACCAGAGACCAAAGGAGGTGATGTGCACATCGATTGGGACAATATGGAC
GGAGACTCGTACTCTGATACTTACTCGCTCGAGAACGAAAGCAAATGGAA
GCATCTAGTTCCGAAGGACACTAACTGGTAA
back to top