Ggra4474.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4474.t1
Unique NameGgra4474.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length429
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:602501..603787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706002.1
Preferred nameGTF2E1
PFAMsTFIIE-A_C,TFIIE_alpha,TF_Zn_Ribbon
Max annot lvl2759|Eukaryota
KEGG koko:K03136,ko:K06636,ko:K20607
KEGG Pathwayko03022,ko04016,ko04110,ko04111,ko04113,ko04114,ko05169,ko05203,ko05418,map03022,map04016,map04110,map04111,map04113,map04114,map05169,map05203,map05418
GOsGO:0000428,GO:0000988,GO:0000989,GO:0000990,GO:0000991,GO:0000993,GO:0001076,GO:0001098,GO:0001099,GO:0001112,GO:0001113,GO:0001120,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005673,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009301,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016073,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0032993,GO:0034367,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042795,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070063,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097550,GO:0097659,GO:0098781,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990234,GO:2000112,GO:2001141
Evalue1.75e-21
EggNOG OGsCOG1675@1|root,KOG2593@2759|Eukaryota
EC2.7.12.2
Descriptiontranscription initiation from RNA polymerase II promoter
COG categoryK
BRITEko00000,ko00001,ko01000,ko01001,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4474Ggra4474Gracilaria gracilis GNS1m malegenetig00000898_pilon 602501..603787 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4474.t1.stop1Ggra4474.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 602501..602503 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4474.t1.CDS1Ggra4474.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 602501..603787 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4474.t1.exon1Ggra4474.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 602501..603787 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4474.t1.start1Ggra4474.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 603785..603787 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4474.t1Ggra4474.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 602501..603787 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4474.t1 ID=Ggra4474.t1|Name=Ggra4474.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=429bp
MAEVPREAVEFARRLVRAFYPDEFVVLLDAVLRQNNFVSHRDLAYRLRMQ
PKEMRQVLVRMEHARLMRRDKREQKRITIRDGKKQTRAIQTDYWYVPLLE
MVDAFMYRVWRITKELEEKRHNVAEGQKYVCTRCGGRFQLLDILSGERPD
GQFECTNMNSKALPCKGLIREQDNSAQIREMERLRNMIDEQLRTLRERAD
HCSRLDIPRHPLEGADEKTWGERVPETVGAHGERVDEDGIDMELRAEEEE
RRRGSDVIVLEPIQREQKDDAFIPEKPSWFKEGRGEEEEEWDDTEQHVLD
NKAGTAASFAREEDEKAYYDMYVKQIHGAGTEARHVEDGRKAATENEVID
MDADDEVVAVESDAEAKVALDTVQNEDVMVSVAGKKMKLSQVTIEMAEQM
TQDEYKTYYALAQPKNTMADEDDFDEFE*
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spliced messenger RNA

>Ggra4474.t1 ID=Ggra4474.t1|Name=Ggra4474.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1287bp|location=Sequence derived from alignment at tig00000898_pilon:602501..603787- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAAGTACCAAGAGAAGCTGTGGAGTTCGCAAGAAGGCTCGTTCG
AGCCTTTTATCCAGATGAATTTGTCGTGCTTCTCGATGCCGTTCTTCGGC
AAAACAATTTTGTCTCCCATAGAGACTTGGCCTATCGACTTCGGATGCAG
CCGAAGGAAATGCGTCAGGTTCTCGTCAGAATGGAGCATGCACGCTTGAT
GCGACGCGATAAGCGCGAACAGAAACGCATTACTATTCGCGACGGTAAAA
AGCAAACACGCGCTATTCAGACAGACTACTGGTATGTTCCTCTGTTAGAG
ATGGTGGACGCCTTCATGTACAGGGTGTGGCGAATCACGAAGGAGCTTGA
GGAAAAGCGCCACAACGTTGCTGAAGGACAAAAATACGTCTGCACGCGTT
GTGGTGGGCGTTTTCAACTGCTTGATATTCTATCTGGCGAACGTCCAGAC
GGACAATTTGAGTGCACTAATATGAATTCAAAAGCTTTGCCGTGTAAAGG
ACTTATAAGGGAACAGGACAACAGCGCACAAATTCGCGAAATGGAAAGAC
TTCGGAATATGATCGATGAGCAATTGCGAACTCTTCGCGAGCGCGCGGAT
CATTGCTCACGCTTGGATATCCCACGTCATCCCCTTGAGGGCGCTGACGA
GAAAACATGGGGCGAGCGCGTGCCCGAGACTGTTGGAGCTCATGGTGAAA
GAGTTGATGAAGATGGTATAGATATGGAGCTTAGGGCGGAAGAAGAGGAG
CGGCGGAGGGGCTCTGACGTGATTGTCCTCGAACCCATCCAAAGGGAACA
AAAAGATGATGCCTTCATTCCAGAAAAGCCGAGTTGGTTCAAGGAGGGCA
GGGGCGAAGAGGAAGAAGAATGGGACGACACAGAGCAGCACGTGCTCGAT
AATAAAGCTGGAACCGCAGCCAGCTTTGCTCGCGAGGAGGATGAGAAAGC
GTACTATGATATGTATGTTAAACAGATCCACGGTGCGGGCACTGAGGCCC
GGCACGTGGAAGATGGCCGAAAGGCCGCTACAGAAAATGAGGTGATTGAC
ATGGACGCTGACGACGAGGTGGTGGCAGTGGAATCTGATGCGGAAGCAAA
GGTGGCATTAGATACGGTACAGAATGAAGACGTGATGGTTTCAGTTGCGG
GCAAGAAGATGAAATTGTCTCAGGTCACAATCGAAATGGCTGAGCAAATG
ACGCAAGATGAATACAAAACTTATTATGCCTTGGCGCAGCCAAAGAACAC
GATGGCCGACGAAGACGATTTTGATGAGTTTGAGTGA
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protein sequence of Ggra4474.t1

>Ggra4474.t1 ID=Ggra4474.t1|Name=Ggra4474.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=429bp
MAEVPREAVEFARRLVRAFYPDEFVVLLDAVLRQNNFVSHRDLAYRLRMQ
PKEMRQVLVRMEHARLMRRDKREQKRITIRDGKKQTRAIQTDYWYVPLLE
MVDAFMYRVWRITKELEEKRHNVAEGQKYVCTRCGGRFQLLDILSGERPD
GQFECTNMNSKALPCKGLIREQDNSAQIREMERLRNMIDEQLRTLRERAD
HCSRLDIPRHPLEGADEKTWGERVPETVGAHGERVDEDGIDMELRAEEEE
RRRGSDVIVLEPIQREQKDDAFIPEKPSWFKEGRGEEEEEWDDTEQHVLD
NKAGTAASFAREEDEKAYYDMYVKQIHGAGTEARHVEDGRKAATENEVID
MDADDEVVAVESDAEAKVALDTVQNEDVMVSVAGKKMKLSQVTIEMAEQM
TQDEYKTYYALAQPKNTMADEDDFDEFE*
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mRNA from alignment at tig00000898_pilon:602501..603787-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4474.t1 ID=Ggra4474.t1|Name=Ggra4474.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1287bp|location=Sequence derived from alignment at tig00000898_pilon:602501..603787- (Gracilaria gracilis GNS1m male)
ATGGCCGAAGTACCAAGAGAAGCTGTGGAGTTCGCAAGAAGGCTCGTTCG
AGCCTTTTATCCAGATGAATTTGTCGTGCTTCTCGATGCCGTTCTTCGGC
AAAACAATTTTGTCTCCCATAGAGACTTGGCCTATCGACTTCGGATGCAG
CCGAAGGAAATGCGTCAGGTTCTCGTCAGAATGGAGCATGCACGCTTGAT
GCGACGCGATAAGCGCGAACAGAAACGCATTACTATTCGCGACGGTAAAA
AGCAAACACGCGCTATTCAGACAGACTACTGGTATGTTCCTCTGTTAGAG
ATGGTGGACGCCTTCATGTACAGGGTGTGGCGAATCACGAAGGAGCTTGA
GGAAAAGCGCCACAACGTTGCTGAAGGACAAAAATACGTCTGCACGCGTT
GTGGTGGGCGTTTTCAACTGCTTGATATTCTATCTGGCGAACGTCCAGAC
GGACAATTTGAGTGCACTAATATGAATTCAAAAGCTTTGCCGTGTAAAGG
ACTTATAAGGGAACAGGACAACAGCGCACAAATTCGCGAAATGGAAAGAC
TTCGGAATATGATCGATGAGCAATTGCGAACTCTTCGCGAGCGCGCGGAT
CATTGCTCACGCTTGGATATCCCACGTCATCCCCTTGAGGGCGCTGACGA
GAAAACATGGGGCGAGCGCGTGCCCGAGACTGTTGGAGCTCATGGTGAAA
GAGTTGATGAAGATGGTATAGATATGGAGCTTAGGGCGGAAGAAGAGGAG
CGGCGGAGGGGCTCTGACGTGATTGTCCTCGAACCCATCCAAAGGGAACA
AAAAGATGATGCCTTCATTCCAGAAAAGCCGAGTTGGTTCAAGGAGGGCA
GGGGCGAAGAGGAAGAAGAATGGGACGACACAGAGCAGCACGTGCTCGAT
AATAAAGCTGGAACCGCAGCCAGCTTTGCTCGCGAGGAGGATGAGAAAGC
GTACTATGATATGTATGTTAAACAGATCCACGGTGCGGGCACTGAGGCCC
GGCACGTGGAAGATGGCCGAAAGGCCGCTACAGAAAATGAGGTGATTGAC
ATGGACGCTGACGACGAGGTGGTGGCAGTGGAATCTGATGCGGAAGCAAA
GGTGGCATTAGATACGGTACAGAATGAAGACGTGATGGTTTCAGTTGCGG
GCAAGAAGATGAAATTGTCTCAGGTCACAATCGAAATGGCTGAGCAAATG
ACGCAAGATGAATACAAAACTTATTATGCCTTGGCGCAGCCAAAGAACAC
GATGGCCGACGAAGACGATTTTGATGAGTTTGAGTGA
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Coding sequence (CDS) from alignment at tig00000898_pilon:602501..603787-

>Ggra4474.t1 ID=Ggra4474.t1|Name=Ggra4474.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1287bp|location=Sequence derived from alignment at tig00000898_pilon:602501..603787- (Gracilaria gracilis GNS1m male)
ATGGCCGAAGTACCAAGAGAAGCTGTGGAGTTCGCAAGAAGGCTCGTTCG
AGCCTTTTATCCAGATGAATTTGTCGTGCTTCTCGATGCCGTTCTTCGGC
AAAACAATTTTGTCTCCCATAGAGACTTGGCCTATCGACTTCGGATGCAG
CCGAAGGAAATGCGTCAGGTTCTCGTCAGAATGGAGCATGCACGCTTGAT
GCGACGCGATAAGCGCGAACAGAAACGCATTACTATTCGCGACGGTAAAA
AGCAAACACGCGCTATTCAGACAGACTACTGGTATGTTCCTCTGTTAGAG
ATGGTGGACGCCTTCATGTACAGGGTGTGGCGAATCACGAAGGAGCTTGA
GGAAAAGCGCCACAACGTTGCTGAAGGACAAAAATACGTCTGCACGCGTT
GTGGTGGGCGTTTTCAACTGCTTGATATTCTATCTGGCGAACGTCCAGAC
GGACAATTTGAGTGCACTAATATGAATTCAAAAGCTTTGCCGTGTAAAGG
ACTTATAAGGGAACAGGACAACAGCGCACAAATTCGCGAAATGGAAAGAC
TTCGGAATATGATCGATGAGCAATTGCGAACTCTTCGCGAGCGCGCGGAT
CATTGCTCACGCTTGGATATCCCACGTCATCCCCTTGAGGGCGCTGACGA
GAAAACATGGGGCGAGCGCGTGCCCGAGACTGTTGGAGCTCATGGTGAAA
GAGTTGATGAAGATGGTATAGATATGGAGCTTAGGGCGGAAGAAGAGGAG
CGGCGGAGGGGCTCTGACGTGATTGTCCTCGAACCCATCCAAAGGGAACA
AAAAGATGATGCCTTCATTCCAGAAAAGCCGAGTTGGTTCAAGGAGGGCA
GGGGCGAAGAGGAAGAAGAATGGGACGACACAGAGCAGCACGTGCTCGAT
AATAAAGCTGGAACCGCAGCCAGCTTTGCTCGCGAGGAGGATGAGAAAGC
GTACTATGATATGTATGTTAAACAGATCCACGGTGCGGGCACTGAGGCCC
GGCACGTGGAAGATGGCCGAAAGGCCGCTACAGAAAATGAGGTGATTGAC
ATGGACGCTGACGACGAGGTGGTGGCAGTGGAATCTGATGCGGAAGCAAA
GGTGGCATTAGATACGGTACAGAATGAAGACGTGATGGTTTCAGTTGCGG
GCAAGAAGATGAAATTGTCTCAGGTCACAATCGAAATGGCTGAGCAAATG
ACGCAAGATGAATACAAAACTTATTATGCCTTGGCGCAGCCAAAGAACAC
GATGGCCGACGAAGACGATTTTGATGAGTTTGAGTGA
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