Ggra8411.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8411.t1
Unique NameGgra8411.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length337
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:496003..497013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog314271.RB2654_17756
PFAMsPeptidase_S58
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K01266
Evalue1.28e-131
EggNOG OGsCOG3191@1|root,COG3191@2|Bacteria,1MWDP@1224|Proteobacteria,2TRDC@28211|Alphaproteobacteria
EC3.4.11.19
Descriptionpeptidase
COG categoryEQ
BRITEko00000,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8411Ggra8411Gracilaria gracilis GNS1m malegenetig00000041_pilon 496003..497013 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8411.t1.stop1Ggra8411.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 496003..496005 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8411.t1.CDS1Ggra8411.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 496003..497013 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8411.t1.exon1Ggra8411.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 496003..497013 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8411.t1.start1Ggra8411.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 497011..497013 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8411.t1Ggra8411.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 496003..497013 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8411.t1 ID=Ggra8411.t1|Name=Ggra8411.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=337bp
MQHTPFRPGVRNLITDVAGLKVGNAEDHEIKTGTTVLVGNEPFVGGVHVM
GGAPGTRETDVLGADKCVEKVDALVLSGGSAFGLDAAAGVMDGLFGAGRG
FKLGAARVPIVPAAILFDLLNGGNKDWGQNPYRRLGVQALEKASEEFALG
SVGAGTGARTANLKGGLGSASVVLESGVTVGALVAANPLGSVVGSDGTFY
AARFEMGEELGGQRVSAATISFGDTLAMQDVVAGRQHTTLGIVATDGALS
KAEATRMAIAAHDGIARAVMPSHTPLDGDVVFGVSTGEKALKAHDEVVLG
HAAANCVSRAILRAIYEARAEKYDVLPTWQQRFGSA*
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spliced messenger RNA

>Ggra8411.t1 ID=Ggra8411.t1|Name=Ggra8411.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1011bp|location=Sequence derived from alignment at tig00000041_pilon:496003..497013- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCACACGCCATTCAGGCCAGGCGTGAGAAACCTTATCACAGACGT
TGCAGGCCTCAAGGTAGGCAACGCAGAGGACCATGAAATCAAGACAGGCA
CAACAGTTTTGGTCGGCAACGAACCGTTTGTAGGCGGTGTGCACGTGATG
GGCGGCGCGCCCGGTACACGCGAAACAGATGTTCTGGGTGCGGACAAATG
CGTTGAGAAGGTGGACGCGTTGGTGCTTTCAGGCGGATCAGCTTTTGGAC
TGGACGCAGCCGCAGGCGTGATGGACGGGCTGTTTGGTGCGGGACGAGGG
TTCAAGCTCGGCGCGGCACGAGTGCCTATCGTACCTGCAGCCATATTGTT
CGACTTGTTGAACGGCGGTAATAAGGACTGGGGCCAGAATCCGTACCGCA
GGCTGGGCGTACAGGCGCTCGAGAAGGCATCGGAAGAGTTTGCACTTGGC
AGCGTTGGAGCGGGGACGGGAGCACGCACGGCGAATTTGAAAGGCGGGCT
TGGGTCAGCGTCCGTTGTACTTGAGAGTGGAGTGACGGTGGGAGCGCTTG
TTGCTGCAAACCCACTTGGGTCGGTTGTCGGCAGCGACGGCACGTTCTAC
GCAGCGCGTTTCGAGATGGGTGAAGAGCTTGGTGGACAGAGAGTGTCAGC
GGCAACGATCAGTTTTGGCGACACGCTAGCAATGCAAGACGTGGTGGCAG
GAAGGCAACACACAACGCTGGGCATTGTGGCCACGGACGGTGCGCTTTCG
AAAGCCGAAGCTACGCGCATGGCGATTGCGGCGCACGACGGCATTGCCAG
AGCGGTGATGCCTTCACACACACCGCTGGACGGCGATGTTGTGTTTGGGG
TGTCCACGGGTGAGAAAGCGCTCAAGGCGCATGACGAAGTGGTGCTCGGC
CATGCCGCTGCCAATTGCGTGTCGAGAGCCATCTTGCGGGCGATTTATGA
GGCAAGAGCTGAGAAGTATGACGTTTTGCCTACATGGCAGCAAAGATTCG
GCAGTGCGTAA
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protein sequence of Ggra8411.t1

>Ggra8411.t1 ID=Ggra8411.t1|Name=Ggra8411.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=337bp
MQHTPFRPGVRNLITDVAGLKVGNAEDHEIKTGTTVLVGNEPFVGGVHVM
GGAPGTRETDVLGADKCVEKVDALVLSGGSAFGLDAAAGVMDGLFGAGRG
FKLGAARVPIVPAAILFDLLNGGNKDWGQNPYRRLGVQALEKASEEFALG
SVGAGTGARTANLKGGLGSASVVLESGVTVGALVAANPLGSVVGSDGTFY
AARFEMGEELGGQRVSAATISFGDTLAMQDVVAGRQHTTLGIVATDGALS
KAEATRMAIAAHDGIARAVMPSHTPLDGDVVFGVSTGEKALKAHDEVVLG
HAAANCVSRAILRAIYEARAEKYDVLPTWQQRFGSA*
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mRNA from alignment at tig00000041_pilon:496003..497013-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8411.t1 ID=Ggra8411.t1|Name=Ggra8411.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1011bp|location=Sequence derived from alignment at tig00000041_pilon:496003..497013- (Gracilaria gracilis GNS1m male)
ATGCAGCACACGCCATTCAGGCCAGGCGTGAGAAACCTTATCACAGACGT
TGCAGGCCTCAAGGTAGGCAACGCAGAGGACCATGAAATCAAGACAGGCA
CAACAGTTTTGGTCGGCAACGAACCGTTTGTAGGCGGTGTGCACGTGATG
GGCGGCGCGCCCGGTACACGCGAAACAGATGTTCTGGGTGCGGACAAATG
CGTTGAGAAGGTGGACGCGTTGGTGCTTTCAGGCGGATCAGCTTTTGGAC
TGGACGCAGCCGCAGGCGTGATGGACGGGCTGTTTGGTGCGGGACGAGGG
TTCAAGCTCGGCGCGGCACGAGTGCCTATCGTACCTGCAGCCATATTGTT
CGACTTGTTGAACGGCGGTAATAAGGACTGGGGCCAGAATCCGTACCGCA
GGCTGGGCGTACAGGCGCTCGAGAAGGCATCGGAAGAGTTTGCACTTGGC
AGCGTTGGAGCGGGGACGGGAGCACGCACGGCGAATTTGAAAGGCGGGCT
TGGGTCAGCGTCCGTTGTACTTGAGAGTGGAGTGACGGTGGGAGCGCTTG
TTGCTGCAAACCCACTTGGGTCGGTTGTCGGCAGCGACGGCACGTTCTAC
GCAGCGCGTTTCGAGATGGGTGAAGAGCTTGGTGGACAGAGAGTGTCAGC
GGCAACGATCAGTTTTGGCGACACGCTAGCAATGCAAGACGTGGTGGCAG
GAAGGCAACACACAACGCTGGGCATTGTGGCCACGGACGGTGCGCTTTCG
AAAGCCGAAGCTACGCGCATGGCGATTGCGGCGCACGACGGCATTGCCAG
AGCGGTGATGCCTTCACACACACCGCTGGACGGCGATGTTGTGTTTGGGG
TGTCCACGGGTGAGAAAGCGCTCAAGGCGCATGACGAAGTGGTGCTCGGC
CATGCCGCTGCCAATTGCGTGTCGAGAGCCATCTTGCGGGCGATTTATGA
GGCAAGAGCTGAGAAGTATGACGTTTTGCCTACATGGCAGCAAAGATTCG
GCAGTGCGTAA
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Coding sequence (CDS) from alignment at tig00000041_pilon:496003..497013-

>Ggra8411.t1 ID=Ggra8411.t1|Name=Ggra8411.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1011bp|location=Sequence derived from alignment at tig00000041_pilon:496003..497013- (Gracilaria gracilis GNS1m male)
ATGCAGCACACGCCATTCAGGCCAGGCGTGAGAAACCTTATCACAGACGT
TGCAGGCCTCAAGGTAGGCAACGCAGAGGACCATGAAATCAAGACAGGCA
CAACAGTTTTGGTCGGCAACGAACCGTTTGTAGGCGGTGTGCACGTGATG
GGCGGCGCGCCCGGTACACGCGAAACAGATGTTCTGGGTGCGGACAAATG
CGTTGAGAAGGTGGACGCGTTGGTGCTTTCAGGCGGATCAGCTTTTGGAC
TGGACGCAGCCGCAGGCGTGATGGACGGGCTGTTTGGTGCGGGACGAGGG
TTCAAGCTCGGCGCGGCACGAGTGCCTATCGTACCTGCAGCCATATTGTT
CGACTTGTTGAACGGCGGTAATAAGGACTGGGGCCAGAATCCGTACCGCA
GGCTGGGCGTACAGGCGCTCGAGAAGGCATCGGAAGAGTTTGCACTTGGC
AGCGTTGGAGCGGGGACGGGAGCACGCACGGCGAATTTGAAAGGCGGGCT
TGGGTCAGCGTCCGTTGTACTTGAGAGTGGAGTGACGGTGGGAGCGCTTG
TTGCTGCAAACCCACTTGGGTCGGTTGTCGGCAGCGACGGCACGTTCTAC
GCAGCGCGTTTCGAGATGGGTGAAGAGCTTGGTGGACAGAGAGTGTCAGC
GGCAACGATCAGTTTTGGCGACACGCTAGCAATGCAAGACGTGGTGGCAG
GAAGGCAACACACAACGCTGGGCATTGTGGCCACGGACGGTGCGCTTTCG
AAAGCCGAAGCTACGCGCATGGCGATTGCGGCGCACGACGGCATTGCCAG
AGCGGTGATGCCTTCACACACACCGCTGGACGGCGATGTTGTGTTTGGGG
TGTCCACGGGTGAGAAAGCGCTCAAGGCGCATGACGAAGTGGTGCTCGGC
CATGCCGCTGCCAATTGCGTGTCGAGAGCCATCTTGCGGGCGATTTATGA
GGCAAGAGCTGAGAAGTATGACGTTTTGCCTACATGGCAGCAAAGATTCG
GCAGTGCGTAA
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