Ggra8485.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8485.t1
Unique Name	Ggra8485.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	730

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000041_pilon	contig	tig00000041_pilon:853121..855310 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	144197.XP_008289730.1
Preferred name	CPNE8
PFAMs	C2,Copine
Max annot lvl	33208\|Metazoa
GOs	GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0031503,GO:0044464,GO:0051179,GO:0051641,GO:0051668,GO:0071944,GO:0097120
Evalue	6.78e-105
EggNOG OGs	KOG1327@1\|root,KOG1327@2759\|Eukaryota,38BYU@33154\|Opisthokonta,3B953@33208\|Metazoa,3CSWC@33213\|Bilateria,485H3@7711\|Chordata,48VXQ@7742\|Vertebrata,49VJ3@7898\|Actinopterygii
Description	Copine VIII
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8485	Ggra8485	Gracilaria gracilis GNS1m male	gene	tig00000041_pilon 853121..855310 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8485.t1.start1	Ggra8485.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000041_pilon 853121..853123 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8485.t1.CDS1	Ggra8485.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000041_pilon 853121..855310 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8485.t1.exon1	Ggra8485.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000041_pilon 853121..855310 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8485.t1.stop1	Ggra8485.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000041_pilon 855308..855310 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8485.t1	Ggra8485.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000041_pilon 853121..855310 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000041_pilon:853121..855310+
coding sequence from alignment at tig00000041_pilon:853121..855310+

mRNA sequence

>Ggra8485.t1 ID=Ggra8485.t1|Name=Ggra8485.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=730bp
MSNSSSFELPQTRRRGSSSPTGSNSAIEPTPFSLTKRSPSARDDASTRSM
NICLQLEASGLPNMDIRGKSDPFVVLYKHVPSAATAADSWLLIDQTETVY
NNLSPKWSTTFAIDYHFGSNTLLRFDIYDRDSRSDDLSKHDFIGQVRCTV
AQVVLADNQTLELPVRHAAKNGANRGMLTIRGEEQKGDLGDSVTLQFSAF
NLRRTKRPFYVLSRQNNDQTFSPVVYSEVHQSYAAGNHENVFRPVCKSLA
RLVNGDLDRLLKIEFLNYERWGGYYHGGSVTFTLRQAKNAATNPMANKFE
LKKKKKKGDVSAGTLIIKKCDISVPYSFIDYIQSGVIINTVIAVDMSSSN
GNPNDPTSLQYKNPSNPNEYVIALRAVGSVLAAYDTTKTFPAYAFGAALP
PRFEEAAHVFALTGNYVTQPVCNGIEDVIHAYYVALNRVAPYQPCRYGPM
LEHVIKTAKAENERDGKIVYTILLVVTDGEFSDFADAANLICSAADMPLS
IVIVGVGKSNFTDLEKLDGDTERLCSTDGTPCARDIVQFVPFHKHRFNTH
QLAREVLDEIPEQFLSYMRSRGIKPQDIQPPSPIRRHSVGPFYPSNDLTS
TVSLQRTFSSCSPSIPSMPTSPAMNPLLTQSTAGAYGGYRTTHGTYTPVQ
SKYIPNQNGAQPAQTGMAHLAVPTSVPSPYGQVYRPPSYNPSSTYGSLPY
GSQVGGAPFGTYSSLYQASTSGHHVYQPR*

spliced messenger RNA

>Ggra8485.t1 ID=Ggra8485.t1|Name=Ggra8485.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2190bp|location=Sequence derived from alignment at tig00000041_pilon:853121..855310+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTAACTCGTCGTCCTTCGAGCTGCCGCAAACGCGTCGTCGCGGTTC
GTCGTCGCCCACTGGCTCCAACTCCGCCATTGAACCTACGCCCTTCTCGC
TCACCAAGCGCTCGCCGTCCGCGCGCGACGACGCCTCCACGCGCTCCATG
AACATCTGTCTGCAGCTCGAGGCCAGCGGATTGCCCAACATGGACATCCG
CGGCAAGAGCGACCCTTTCGTCGTGTTGTACAAGCACGTGCCGTCCGCCG
CCACGGCCGCCGACTCGTGGCTGCTCATCGACCAGACCGAGACCGTTTAC
AACAACCTGTCGCCCAAGTGGAGCACTACTTTTGCCATTGACTACCATTT
CGGCAGCAACACGCTGCTGCGCTTTGACATCTATGACCGTGACTCGCGTT
CAGATGACCTTTCCAAGCACGACTTCATCGGCCAGGTGCGCTGTACCGTG
GCGCAGGTCGTACTGGCCGACAACCAGACGCTAGAGTTGCCGGTACGTCA
CGCCGCCAAGAACGGCGCCAATCGCGGTATGCTCACCATCCGCGGTGAGG
AGCAAAAGGGCGACCTTGGAGACAGTGTCACGCTACAATTCTCCGCCTTC
AATTTGCGCCGCACCAAGCGTCCGTTCTACGTGCTCAGTCGCCAGAATAA
TGACCAAACCTTCAGTCCCGTCGTTTACTCGGAGGTGCATCAGTCGTACG
CCGCGGGAAACCATGAGAACGTGTTCCGTCCCGTGTGCAAGTCGCTGGCG
CGTCTGGTGAACGGTGATTTAGACCGCTTGCTCAAGATTGAGTTTCTTAA
TTATGAGAGATGGGGCGGTTATTATCATGGCGGTAGTGTCACTTTCACCT
TGAGACAGGCCAAAAATGCGGCCACAAATCCAATGGCTAACAAATTCGAG
CTTAAGAAGAAAAAAAAGAAGGGTGATGTGTCGGCCGGTACGCTTATCAT
CAAGAAGTGCGACATTTCAGTCCCATACTCTTTCATCGACTACATCCAAA
GCGGCGTCATTATCAATACTGTTATTGCCGTTGACATGTCAAGTTCCAAC
GGAAACCCTAACGATCCTACTTCACTGCAATATAAGAACCCTTCCAATCC
AAACGAATACGTCATCGCCTTGCGCGCCGTGGGCAGCGTCTTGGCCGCTT
ATGATACCACAAAAACCTTTCCTGCGTATGCGTTTGGAGCCGCGTTACCA
CCTCGCTTCGAAGAAGCTGCGCATGTGTTTGCACTCACTGGCAATTATGT
CACTCAACCGGTCTGCAATGGCATAGAAGATGTGATTCATGCTTACTACG
TCGCTCTGAATCGTGTTGCGCCCTACCAGCCCTGCCGGTACGGACCCATG
CTGGAACACGTCATCAAGACGGCAAAGGCTGAAAATGAGCGCGATGGAAA
GATTGTGTACACCATCTTGCTTGTCGTTACGGATGGTGAGTTTTCAGACT
TTGCTGATGCAGCCAACCTTATCTGTTCTGCCGCTGATATGCCTCTGTCC
ATTGTGATTGTGGGCGTCGGAAAGTCCAACTTCACTGACTTGGAGAAACT
TGACGGAGATACGGAGCGCTTGTGTTCCACGGACGGTACGCCGTGTGCTA
GGGATATTGTGCAGTTTGTACCATTCCACAAGCATCGATTCAATACACAT
CAGCTGGCAAGAGAGGTTTTGGATGAGATTCCGGAACAATTCTTGTCGTA
TATGAGAAGTCGAGGTATCAAACCGCAAGATATCCAACCGCCATCTCCTA
TTCGTCGCCACTCTGTTGGCCCTTTTTATCCGAGCAATGACTTGACGTCG
ACGGTTTCACTGCAACGGACATTCAGTTCATGCAGTCCGTCGATACCTTC
GATGCCGACCAGCCCGGCTATGAATCCTCTACTGACTCAATCGACGGCTG
GCGCTTATGGCGGCTACAGAACTACACATGGGACCTATACGCCGGTGCAA
AGCAAATATATTCCGAACCAAAATGGTGCTCAACCGGCTCAAACGGGTAT
GGCCCATCTTGCTGTTCCCACTTCTGTGCCCAGTCCTTATGGCCAAGTGT
ATCGCCCACCGTCCTACAATCCGTCAAGTACGTATGGCTCGTTGCCGTAT
GGTTCACAAGTGGGTGGTGCTCCATTTGGCACATATAGCTCGCTTTACCA
AGCAAGCACCTCAGGACATCATGTATATCAACCTCGGTGA

protein sequence of Ggra8485.t1

>Ggra8485.t1 ID=Ggra8485.t1|Name=Ggra8485.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=730bp
MSNSSSFELPQTRRRGSSSPTGSNSAIEPTPFSLTKRSPSARDDASTRSM
NICLQLEASGLPNMDIRGKSDPFVVLYKHVPSAATAADSWLLIDQTETVY
NNLSPKWSTTFAIDYHFGSNTLLRFDIYDRDSRSDDLSKHDFIGQVRCTV
AQVVLADNQTLELPVRHAAKNGANRGMLTIRGEEQKGDLGDSVTLQFSAF
NLRRTKRPFYVLSRQNNDQTFSPVVYSEVHQSYAAGNHENVFRPVCKSLA
RLVNGDLDRLLKIEFLNYERWGGYYHGGSVTFTLRQAKNAATNPMANKFE
LKKKKKKGDVSAGTLIIKKCDISVPYSFIDYIQSGVIINTVIAVDMSSSN
GNPNDPTSLQYKNPSNPNEYVIALRAVGSVLAAYDTTKTFPAYAFGAALP
PRFEEAAHVFALTGNYVTQPVCNGIEDVIHAYYVALNRVAPYQPCRYGPM
LEHVIKTAKAENERDGKIVYTILLVVTDGEFSDFADAANLICSAADMPLS
IVIVGVGKSNFTDLEKLDGDTERLCSTDGTPCARDIVQFVPFHKHRFNTH
QLAREVLDEIPEQFLSYMRSRGIKPQDIQPPSPIRRHSVGPFYPSNDLTS
TVSLQRTFSSCSPSIPSMPTSPAMNPLLTQSTAGAYGGYRTTHGTYTPVQ
SKYIPNQNGAQPAQTGMAHLAVPTSVPSPYGQVYRPPSYNPSSTYGSLPY
GSQVGGAPFGTYSSLYQASTSGHHVYQPR*

mRNA from alignment at tig00000041_pilon:853121..855310+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8485.t1 ID=Ggra8485.t1|Name=Ggra8485.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2190bp|location=Sequence derived from alignment at tig00000041_pilon:853121..855310+ (Gracilaria gracilis GNS1m male)
ATGTCTAACTCGTCGTCCTTCGAGCTGCCGCAAACGCGTCGTCGCGGTTC
GTCGTCGCCCACTGGCTCCAACTCCGCCATTGAACCTACGCCCTTCTCGC
TCACCAAGCGCTCGCCGTCCGCGCGCGACGACGCCTCCACGCGCTCCATG
AACATCTGTCTGCAGCTCGAGGCCAGCGGATTGCCCAACATGGACATCCG
CGGCAAGAGCGACCCTTTCGTCGTGTTGTACAAGCACGTGCCGTCCGCCG
CCACGGCCGCCGACTCGTGGCTGCTCATCGACCAGACCGAGACCGTTTAC
AACAACCTGTCGCCCAAGTGGAGCACTACTTTTGCCATTGACTACCATTT
CGGCAGCAACACGCTGCTGCGCTTTGACATCTATGACCGTGACTCGCGTT
CAGATGACCTTTCCAAGCACGACTTCATCGGCCAGGTGCGCTGTACCGTG
GCGCAGGTCGTACTGGCCGACAACCAGACGCTAGAGTTGCCGGTACGTCA
CGCCGCCAAGAACGGCGCCAATCGCGGTATGCTCACCATCCGCGGTGAGG
AGCAAAAGGGCGACCTTGGAGACAGTGTCACGCTACAATTCTCCGCCTTC
AATTTGCGCCGCACCAAGCGTCCGTTCTACGTGCTCAGTCGCCAGAATAA
TGACCAAACCTTCAGTCCCGTCGTTTACTCGGAGGTGCATCAGTCGTACG
CCGCGGGAAACCATGAGAACGTGTTCCGTCCCGTGTGCAAGTCGCTGGCG
CGTCTGGTGAACGGTGATTTAGACCGCTTGCTCAAGATTGAGTTTCTTAA
TTATGAGAGATGGGGCGGTTATTATCATGGCGGTAGTGTCACTTTCACCT
TGAGACAGGCCAAAAATGCGGCCACAAATCCAATGGCTAACAAATTCGAG
CTTAAGAAGAAAAAAAAGAAGGGTGATGTGTCGGCCGGTACGCTTATCAT
CAAGAAGTGCGACATTTCAGTCCCATACTCTTTCATCGACTACATCCAAA
GCGGCGTCATTATCAATACTGTTATTGCCGTTGACATGTCAAGTTCCAAC
GGAAACCCTAACGATCCTACTTCACTGCAATATAAGAACCCTTCCAATCC
AAACGAATACGTCATCGCCTTGCGCGCCGTGGGCAGCGTCTTGGCCGCTT
ATGATACCACAAAAACCTTTCCTGCGTATGCGTTTGGAGCCGCGTTACCA
CCTCGCTTCGAAGAAGCTGCGCATGTGTTTGCACTCACTGGCAATTATGT
CACTCAACCGGTCTGCAATGGCATAGAAGATGTGATTCATGCTTACTACG
TCGCTCTGAATCGTGTTGCGCCCTACCAGCCCTGCCGGTACGGACCCATG
CTGGAACACGTCATCAAGACGGCAAAGGCTGAAAATGAGCGCGATGGAAA
GATTGTGTACACCATCTTGCTTGTCGTTACGGATGGTGAGTTTTCAGACT
TTGCTGATGCAGCCAACCTTATCTGTTCTGCCGCTGATATGCCTCTGTCC
ATTGTGATTGTGGGCGTCGGAAAGTCCAACTTCACTGACTTGGAGAAACT
TGACGGAGATACGGAGCGCTTGTGTTCCACGGACGGTACGCCGTGTGCTA
GGGATATTGTGCAGTTTGTACCATTCCACAAGCATCGATTCAATACACAT
CAGCTGGCAAGAGAGGTTTTGGATGAGATTCCGGAACAATTCTTGTCGTA
TATGAGAAGTCGAGGTATCAAACCGCAAGATATCCAACCGCCATCTCCTA
TTCGTCGCCACTCTGTTGGCCCTTTTTATCCGAGCAATGACTTGACGTCG
ACGGTTTCACTGCAACGGACATTCAGTTCATGCAGTCCGTCGATACCTTC
GATGCCGACCAGCCCGGCTATGAATCCTCTACTGACTCAATCGACGGCTG
GCGCTTATGGCGGCTACAGAACTACACATGGGACCTATACGCCGGTGCAA
AGCAAATATATTCCGAACCAAAATGGTGCTCAACCGGCTCAAACGGGTAT
GGCCCATCTTGCTGTTCCCACTTCTGTGCCCAGTCCTTATGGCCAAGTGT
ATCGCCCACCGTCCTACAATCCGTCAAGTACGTATGGCTCGTTGCCGTAT
GGTTCACAAGTGGGTGGTGCTCCATTTGGCACATATAGCTCGCTTTACCA
AGCAAGCACCTCAGGACATCATGTATATCAACCTCGGTGA

Coding sequence (CDS) from alignment at tig00000041_pilon:853121..855310+

>Ggra8485.t1 ID=Ggra8485.t1|Name=Ggra8485.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2190bp|location=Sequence derived from alignment at tig00000041_pilon:853121..855310+ (Gracilaria gracilis GNS1m male)
ATGTCTAACTCGTCGTCCTTCGAGCTGCCGCAAACGCGTCGTCGCGGTTC
GTCGTCGCCCACTGGCTCCAACTCCGCCATTGAACCTACGCCCTTCTCGC
TCACCAAGCGCTCGCCGTCCGCGCGCGACGACGCCTCCACGCGCTCCATG
AACATCTGTCTGCAGCTCGAGGCCAGCGGATTGCCCAACATGGACATCCG
CGGCAAGAGCGACCCTTTCGTCGTGTTGTACAAGCACGTGCCGTCCGCCG
CCACGGCCGCCGACTCGTGGCTGCTCATCGACCAGACCGAGACCGTTTAC
AACAACCTGTCGCCCAAGTGGAGCACTACTTTTGCCATTGACTACCATTT
CGGCAGCAACACGCTGCTGCGCTTTGACATCTATGACCGTGACTCGCGTT
CAGATGACCTTTCCAAGCACGACTTCATCGGCCAGGTGCGCTGTACCGTG
GCGCAGGTCGTACTGGCCGACAACCAGACGCTAGAGTTGCCGGTACGTCA
CGCCGCCAAGAACGGCGCCAATCGCGGTATGCTCACCATCCGCGGTGAGG
AGCAAAAGGGCGACCTTGGAGACAGTGTCACGCTACAATTCTCCGCCTTC
AATTTGCGCCGCACCAAGCGTCCGTTCTACGTGCTCAGTCGCCAGAATAA
TGACCAAACCTTCAGTCCCGTCGTTTACTCGGAGGTGCATCAGTCGTACG
CCGCGGGAAACCATGAGAACGTGTTCCGTCCCGTGTGCAAGTCGCTGGCG
CGTCTGGTGAACGGTGATTTAGACCGCTTGCTCAAGATTGAGTTTCTTAA
TTATGAGAGATGGGGCGGTTATTATCATGGCGGTAGTGTCACTTTCACCT
TGAGACAGGCCAAAAATGCGGCCACAAATCCAATGGCTAACAAATTCGAG
CTTAAGAAGAAAAAAAAGAAGGGTGATGTGTCGGCCGGTACGCTTATCAT
CAAGAAGTGCGACATTTCAGTCCCATACTCTTTCATCGACTACATCCAAA
GCGGCGTCATTATCAATACTGTTATTGCCGTTGACATGTCAAGTTCCAAC
GGAAACCCTAACGATCCTACTTCACTGCAATATAAGAACCCTTCCAATCC
AAACGAATACGTCATCGCCTTGCGCGCCGTGGGCAGCGTCTTGGCCGCTT
ATGATACCACAAAAACCTTTCCTGCGTATGCGTTTGGAGCCGCGTTACCA
CCTCGCTTCGAAGAAGCTGCGCATGTGTTTGCACTCACTGGCAATTATGT
CACTCAACCGGTCTGCAATGGCATAGAAGATGTGATTCATGCTTACTACG
TCGCTCTGAATCGTGTTGCGCCCTACCAGCCCTGCCGGTACGGACCCATG
CTGGAACACGTCATCAAGACGGCAAAGGCTGAAAATGAGCGCGATGGAAA
GATTGTGTACACCATCTTGCTTGTCGTTACGGATGGTGAGTTTTCAGACT
TTGCTGATGCAGCCAACCTTATCTGTTCTGCCGCTGATATGCCTCTGTCC
ATTGTGATTGTGGGCGTCGGAAAGTCCAACTTCACTGACTTGGAGAAACT
TGACGGAGATACGGAGCGCTTGTGTTCCACGGACGGTACGCCGTGTGCTA
GGGATATTGTGCAGTTTGTACCATTCCACAAGCATCGATTCAATACACAT
CAGCTGGCAAGAGAGGTTTTGGATGAGATTCCGGAACAATTCTTGTCGTA
TATGAGAAGTCGAGGTATCAAACCGCAAGATATCCAACCGCCATCTCCTA
TTCGTCGCCACTCTGTTGGCCCTTTTTATCCGAGCAATGACTTGACGTCG
ACGGTTTCACTGCAACGGACATTCAGTTCATGCAGTCCGTCGATACCTTC
GATGCCGACCAGCCCGGCTATGAATCCTCTACTGACTCAATCGACGGCTG
GCGCTTATGGCGGCTACAGAACTACACATGGGACCTATACGCCGGTGCAA
AGCAAATATATTCCGAACCAAAATGGTGCTCAACCGGCTCAAACGGGTAT
GGCCCATCTTGCTGTTCCCACTTCTGTGCCCAGTCCTTATGGCCAAGTGT
ATCGCCCACCGTCCTACAATCCGTCAAGTACGTATGGCTCGTTGCCGTAT
GGTTCACAAGTGGGTGGTGCTCCATTTGGCACATATAGCTCGCTTTACCA
AGCAAGCACCTCAGGACATCATGTATATCAACCTCGGTGA