Ggra4489.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4489.t1
Unique NameGgra4489.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length302
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:632818..633987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4489Ggra4489Gracilaria gracilis GNS1m malegenetig00000898_pilon 632818..633987 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4489.t1Ggra4489.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 632818..633987 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4489.t1.start1Ggra4489.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 632818..632820 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4489.t1.CDS1Ggra4489.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 632818..633143 +
Ggra4489.t1.CDS2Ggra4489.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000898_pilon 633408..633987 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4489.t1.exon1Ggra4489.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 632818..633143 +
Ggra4489.t1.exon2Ggra4489.t1.exon2Gracilaria gracilis GNS1m maleexontig00000898_pilon 633408..633987 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4489.t1.intron1Ggra4489.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000898_pilon 633144..633407 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4489.t1.stop1Ggra4489.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 633985..633987 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4489.t1 ID=Ggra4489.t1|Name=Ggra4489.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=302bp
MKFHGTVPLIKLEDPELSVGLSYATPKKIFEVVDTFGIETDQESSLALSV
MLYNANEEWREGDDVYVRVCGSGFQRLWKVRVTRKLLMAYNADIQSIERG
ATRTIVDNTVLIHLEQYEVAVSVLIAGLTLWYYLLSWVAGIDDMGVTFAL
TFRGSEECVGSHINMSLGKQGRPIVDPGEQGKHNHLVGTYVVKDKKTEKS
ILRFVSAAMCTTKMREVLRPTNSCALGSNVGVKTLWDIVMTSRRIRSLGC
LLTNRFYVVHTASGLKAFEVSSASTTARHTNWNEIVDETVGVIERDHVIL
G*
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spliced messenger RNA

>Ggra4489.t1 ID=Ggra4489.t1|Name=Ggra4489.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=906bp|location=Sequence derived from alignment at tig00000898_pilon:632818..633987+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTTCATGGGACCGTCCCTCTGATCAAACTGGAAGATCCAGAACT
ATCCGTGGGGCTCAGTTATGCTACTCCAAAGAAAATATTCGAGGTAGTCG
ATACATTTGGTATAGAGACCGATCAGGAGTCATCACTTGCGCTCTCTGTA
ATGTTGTATAACGCAAACGAAGAATGGAGAGAAGGAGATGATGTTTATGT
GAGGGTCTGTGGGTCAGGATTTCAGCGCTTATGGAAAGTAAGAGTTACAA
GGAAACTTTTGATGGCCTACAATGCAGATATTCAAAGCATCGAGAGGGGT
GCCACCAGAACGATTGTGGATAATACTGTATTGATACATTTGGAGCAATA
TGAAGTGGCAGTGTCGGTGCTGATCGCCGGTCTCACTTTGTGGTACTATC
TCTTATCATGGGTGGCCGGGATAGATGATATGGGTGTGACGTTTGCCCTT
ACATTTCGCGGCTCAGAGGAGTGTGTTGGAAGCCATATTAATATGTCTCT
AGGAAAGCAAGGCAGACCCATCGTGGACCCAGGAGAACAAGGAAAGCATA
ATCATTTGGTGGGCACTTATGTTGTGAAGGACAAGAAAACCGAAAAGTCA
ATCTTGAGGTTTGTCAGCGCTGCTATGTGCACAACGAAGATGAGGGAGGT
ACTGAGACCGACCAACTCGTGTGCCCTGGGGTCTAATGTGGGTGTCAAGA
CGTTGTGGGACATAGTGATGACCAGCAGACGCATCCGCAGTCTCGGATGT
CTGTTGACCAACAGGTTTTACGTAGTGCACACTGCATCTGGCCTTAAAGC
GTTCGAGGTCTCGAGTGCGTCCACGACTGCAAGACATACAAACTGGAACG
AGATTGTTGACGAAACGGTGGGAGTTATTGAGCGAGATCACGTCATCCTC
GGATAA
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protein sequence of Ggra4489.t1

>Ggra4489.t1 ID=Ggra4489.t1|Name=Ggra4489.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=302bp
MKFHGTVPLIKLEDPELSVGLSYATPKKIFEVVDTFGIETDQESSLALSV
MLYNANEEWREGDDVYVRVCGSGFQRLWKVRVTRKLLMAYNADIQSIERG
ATRTIVDNTVLIHLEQYEVAVSVLIAGLTLWYYLLSWVAGIDDMGVTFAL
TFRGSEECVGSHINMSLGKQGRPIVDPGEQGKHNHLVGTYVVKDKKTEKS
ILRFVSAAMCTTKMREVLRPTNSCALGSNVGVKTLWDIVMTSRRIRSLGC
LLTNRFYVVHTASGLKAFEVSSASTTARHTNWNEIVDETVGVIERDHVIL
G*
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mRNA from alignment at tig00000898_pilon:632818..633987+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4489.t1 ID=Ggra4489.t1|Name=Ggra4489.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1170bp|location=Sequence derived from alignment at tig00000898_pilon:632818..633987+ (Gracilaria gracilis GNS1m male)
ATGAAGTTTCATGGGACCGTCCCTCTGATCAAACTGGAAGATCCAGAACT
ATCCGTGGGGCTCAGTTATGCTACTCCAAAGAAAATATTCGAGGTAGTCG
ATACATTTGGTATAGAGACCGATCAGGAGTCATCACTTGCGCTCTCTGTA
ATGTTGTATAACGCAAACGAAGAATGGAGAGAAGGAGATGATGTTTATGT
GAGGGTCTGTGGGTCAGGATTTCAGCGCTTATGGAAAGTAAGAGTTACAA
GGAAACTTTTGATGGCCTACAATGCAGATATTCAAAGCATCGAGAGGGGT
GCCACCAGAACGATTGTGGATAATACGTATGGATACTGTTACAAAAGAGG
ggaacgcaacagcatctttgtcgcctgccattcagttctcatcaccgaag
gcatggtggtctgttgtcgttgtgtttACAACTCATTAAAAAAGAACCTG
CATGCCAACGaaatggatgtcaggacgcaacgcgcactaaagagcgtgat
cacaaaacgaagttggtattacAACAGGTCAACGATACTGCGGACATCTG
TGTTATACTTCATATTCTCTCTTTCTATAATTACGTCCAGTGTATTGATA
CATTTGGAGCAATATGAAGTGGCAGTGTCGGTGCTGATCGCCGGTCTCAC
TTTGTGGTACTATCTCTTATCATGGGTGGCCGGGATAGATGATATGGGTG
TGACGTTTGCCCTTACATTTCGCGGCTCAGAGGAGTGTGTTGGAAGCCAT
ATTAATATGTCTCTAGGAAAGCAAGGCAGACCCATCGTGGACCCAGGAGA
ACAAGGAAAGCATAATCATTTGGTGGGCACTTATGTTGTGAAGGACAAGA
AAACCGAAAAGTCAATCTTGAGGTTTGTCAGCGCTGCTATGTGCACAACG
AAGATGAGGGAGGTACTGAGACCGACCAACTCGTGTGCCCTGGGGTCTAA
TGTGGGTGTCAAGACGTTGTGGGACATAGTGATGACCAGCAGACGCATCC
GCAGTCTCGGATGTCTGTTGACCAACAGGTTTTACGTAGTGCACACTGCA
TCTGGCCTTAAAGCGTTCGAGGTCTCGAGTGCGTCCACGACTGCAAGACA
TACAAACTGGAACGAGATTGTTGACGAAACGGTGGGAGTTATTGAGCGAG
ATCACGTCATCCTCGGATAA
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Coding sequence (CDS) from alignment at tig00000898_pilon:632818..633987+

>Ggra4489.t1 ID=Ggra4489.t1|Name=Ggra4489.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=906bp|location=Sequence derived from alignment at tig00000898_pilon:632818..633987+ (Gracilaria gracilis GNS1m male)
ATGAAGTTTCATGGGACCGTCCCTCTGATCAAACTGGAAGATCCAGAACT
ATCCGTGGGGCTCAGTTATGCTACTCCAAAGAAAATATTCGAGGTAGTCG
ATACATTTGGTATAGAGACCGATCAGGAGTCATCACTTGCGCTCTCTGTA
ATGTTGTATAACGCAAACGAAGAATGGAGAGAAGGAGATGATGTTTATGT
GAGGGTCTGTGGGTCAGGATTTCAGCGCTTATGGAAAGTAAGAGTTACAA
GGAAACTTTTGATGGCCTACAATGCAGATATTCAAAGCATCGAGAGGGGT
GCCACCAGAACGATTGTGGATAATACTGTATTGATACATTTGGAGCAATA
TGAAGTGGCAGTGTCGGTGCTGATCGCCGGTCTCACTTTGTGGTACTATC
TCTTATCATGGGTGGCCGGGATAGATGATATGGGTGTGACGTTTGCCCTT
ACATTTCGCGGCTCAGAGGAGTGTGTTGGAAGCCATATTAATATGTCTCT
AGGAAAGCAAGGCAGACCCATCGTGGACCCAGGAGAACAAGGAAAGCATA
ATCATTTGGTGGGCACTTATGTTGTGAAGGACAAGAAAACCGAAAAGTCA
ATCTTGAGGTTTGTCAGCGCTGCTATGTGCACAACGAAGATGAGGGAGGT
ACTGAGACCGACCAACTCGTGTGCCCTGGGGTCTAATGTGGGTGTCAAGA
CGTTGTGGGACATAGTGATGACCAGCAGACGCATCCGCAGTCTCGGATGT
CTGTTGACCAACAGGTTTTACGTAGTGCACACTGCATCTGGCCTTAAAGC
GTTCGAGGTCTCGAGTGCGTCCACGACTGCAAGACATACAAACTGGAACG
AGATTGTTGACGAAACGGTGGGAGTTATTGAGCGAGATCACGTCATCCTC
GGATAA
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