Ggra5727.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5727.t1
Unique NameGgra5727.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length222
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000897_piloncontigtig00000897_pilon:142857..143611 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog118161.KB235922_gene4597
Preferred nameycf58
PFAMsCpeS
Max annot lvl1117|Cyanobacteria
GOsGO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0017006,GO:0017007,GO:0017009,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564
Evalue1.09e-20
EggNOG OGs28IBS@1|root,2Z8E6@2|Bacteria,1G07P@1117|Cyanobacteria,3VHVD@52604|Pleurocapsales
DescriptionCovalently attaches a chromophore to Cys residue(s) of phycobiliproteins
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5727Ggra5727Gracilaria gracilis GNS1m malegenetig00000897_pilon 142857..143611 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5727.t1Ggra5727.t1Gracilaria gracilis GNS1m malepolypeptidetig00000897_pilon 142857..143611 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5727.t1.stop1Ggra5727.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000897_pilon 142857..142859 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5727.t1.CDS1Ggra5727.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000897_pilon 142857..143276 -
Ggra5727.t1.CDS2Ggra5727.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000897_pilon 143366..143611 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5727.t1.exon1Ggra5727.t1.exon1Gracilaria gracilis GNS1m maleexontig00000897_pilon 142857..143276 -
Ggra5727.t1.exon2Ggra5727.t1.exon2Gracilaria gracilis GNS1m maleexontig00000897_pilon 143366..143611 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5727.t1.intron1Ggra5727.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000897_pilon 143277..143365 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5727.t1.start1Ggra5727.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000897_pilon 143609..143611 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5727.t1 ID=Ggra5727.t1|Name=Ggra5727.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=222bp
MAWDQEEENHECFTVFALVPDDDDIRKGKMLRDRRYAEIIPIAGTCHLDE
HDDLNLITSYDGGKVVEKFSFDGPDVVNRVSTGSEELDVAALLDKMACFG
VTGRGSPFEVPETDKTQFAGARRWGTTNSSSKPSTNSAFSSGFTSRSTKN
MAKNPSVNSTFSSSFGNSSNGTTKESPENIQGFSKKYIDAASDYRIDLSK
VPPSMRQDFAASFDPDEKKST*
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spliced messenger RNA

>Ggra5727.t1 ID=Ggra5727.t1|Name=Ggra5727.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=666bp|location=Sequence derived from alignment at tig00000897_pilon:142857..143611- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTGGGATCAAGAAGAGGAGAATCACGAATGTTTCACAGTGTTTGC
GCTCGTTCCAGACGATGATGACATTCGCAAAGGCAAAATGCTACGCGATA
GGAGATATGCTGAAATTATACCCATCGCAGGTACTTGTCACCTTGACGAG
CACGATGACCTAAACCTTATTACGTCTTACGATGGTGGCAAGGTTGTCGA
GAAGTTTTCCTTCGATGGACCGGATGTAGTCAATCGCGTGTCAACGGGCA
GCGAGGAATTGGATGTTGCCGCTTTGTTAGATAAAATGGCTTGCTTCGGT
GTCACCGGAAGGGGATCTCCGTTTGAAGTTCCGGAAACGGACAAGACGCA
ATTTGCAGGAGCGAGAAGATGGGGAACTACAAATTCATCCTCAAAACCAT
CGACGAACAGCGCCTTTAGTTCTGGTTTCACTTCAAGGTCTACGAAAAAC
ATGGCAAAAAACCCTTCGGTAAACAGCACTTTTAGCTCTAGTTTCGGCAA
CTCTTCCAATGGGACGACAAAAGAATCCCCTGAGAATATTCAAGGCTTTT
CTAAGAAGTATATAGATGCGGCCAGTGATTATAGAATCGATCTTTCCAAA
GTACCACCTAGTATGCGCCAAGATTTCGCCGCAAGTTTTGACCCAGATGA
GAAGAAATCCACATAG
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protein sequence of Ggra5727.t1

>Ggra5727.t1 ID=Ggra5727.t1|Name=Ggra5727.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=222bp
MAWDQEEENHECFTVFALVPDDDDIRKGKMLRDRRYAEIIPIAGTCHLDE
HDDLNLITSYDGGKVVEKFSFDGPDVVNRVSTGSEELDVAALLDKMACFG
VTGRGSPFEVPETDKTQFAGARRWGTTNSSSKPSTNSAFSSGFTSRSTKN
MAKNPSVNSTFSSSFGNSSNGTTKESPENIQGFSKKYIDAASDYRIDLSK
VPPSMRQDFAASFDPDEKKST*
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mRNA from alignment at tig00000897_pilon:142857..143611-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5727.t1 ID=Ggra5727.t1|Name=Ggra5727.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=755bp|location=Sequence derived from alignment at tig00000897_pilon:142857..143611- (Gracilaria gracilis GNS1m male)
ATGGCTTGGGATCAAGAAGAGGAGAATCACGAATGTTTCACAGTGTTTGC
GCTCGTTCCAGACGATGATGACATTCGCAAAGGCAAAATGCTACGCGATA
GGAGATATGCTGAAATTATACCCATCGCAGGTACTTGTCACCTTGACGAG
CACGATGACCTAAACCTTATTACGTCTTACGATGGTGGCAAGGTTGTCGA
GAAGTTTTCCTTCGATGGACCGGATGTAGTCAATCGCGTGTCAACGGTGC
GTCGGTTTGGTCGCTTTAGCACAGCTACGTTTGTTACGGAATGCGGGCAG
GAAACACTAGTGAAAAGGAAATCAAAGACCATCAGGGCAGCGAGGAATTG
GATGTTGCCGCTTTGTTAGATAAAATGGCTTGCTTCGGTGTCACCGGAAG
GGGATCTCCGTTTGAAGTTCCGGAAACGGACAAGACGCAATTTGCAGGAG
CGAGAAGATGGGGAACTACAAATTCATCCTCAAAACCATCGACGAACAGC
GCCTTTAGTTCTGGTTTCACTTCAAGGTCTACGAAAAACATGGCAAAAAA
CCCTTCGGTAAACAGCACTTTTAGCTCTAGTTTCGGCAACTCTTCCAATG
GGACGACAAAAGAATCCCCTGAGAATATTCAAGGCTTTTCTAAGAAGTAT
ATAGATGCGGCCAGTGATTATAGAATCGATCTTTCCAAAGTACCACCTAG
TATGCGCCAAGATTTCGCCGCAAGTTTTGACCCAGATGAGAAGAAATCCA
CATAG
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Coding sequence (CDS) from alignment at tig00000897_pilon:142857..143611-

>Ggra5727.t1 ID=Ggra5727.t1|Name=Ggra5727.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=666bp|location=Sequence derived from alignment at tig00000897_pilon:142857..143611- (Gracilaria gracilis GNS1m male)
ATGGCTTGGGATCAAGAAGAGGAGAATCACGAATGTTTCACAGTGTTTGC
GCTCGTTCCAGACGATGATGACATTCGCAAAGGCAAAATGCTACGCGATA
GGAGATATGCTGAAATTATACCCATCGCAGGTACTTGTCACCTTGACGAG
CACGATGACCTAAACCTTATTACGTCTTACGATGGTGGCAAGGTTGTCGA
GAAGTTTTCCTTCGATGGACCGGATGTAGTCAATCGCGTGTCAACGGGCA
GCGAGGAATTGGATGTTGCCGCTTTGTTAGATAAAATGGCTTGCTTCGGT
GTCACCGGAAGGGGATCTCCGTTTGAAGTTCCGGAAACGGACAAGACGCA
ATTTGCAGGAGCGAGAAGATGGGGAACTACAAATTCATCCTCAAAACCAT
CGACGAACAGCGCCTTTAGTTCTGGTTTCACTTCAAGGTCTACGAAAAAC
ATGGCAAAAAACCCTTCGGTAAACAGCACTTTTAGCTCTAGTTTCGGCAA
CTCTTCCAATGGGACGACAAAAGAATCCCCTGAGAATATTCAAGGCTTTT
CTAAGAAGTATATAGATGCGGCCAGTGATTATAGAATCGATCTTTCCAAA
GTACCACCTAGTATGCGCCAAGATTTCGCCGCAAGTTTTGACCCAGATGA
GAAGAAATCCACATAG
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