Ggra2034.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2034.t1
Unique NameGgra2034.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length316
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000030_piloncontigtig00000030_pilon:36010..36957 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog319795.Dgeo_1655
PFAMsFasciclin
Max annot lvl1297|Deinococcus-Thermus
KEGG koko:K19519
Evalue8.04e-10
EggNOG OGsCOG2335@1|root,COG2335@2|Bacteria,1WMNY@1297|Deinococcus-Thermus
DescriptionCOG2335 Secreted and surface protein containing fasciclin-like repeats
COG categoryM
BRITEko00000,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2034Ggra2034Gracilaria gracilis GNS1m malegenetig00000030_pilon 36010..36957 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2034.t1.stop1Ggra2034.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000030_pilon 36010..36012 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2034.t1.CDS1Ggra2034.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000030_pilon 36010..36957 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2034.t1.exon1Ggra2034.t1.exon1Gracilaria gracilis GNS1m maleexontig00000030_pilon 36010..36957 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2034.t1.start1Ggra2034.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000030_pilon 36955..36957 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2034.t1Ggra2034.t1Gracilaria gracilis GNS1m malepolypeptidetig00000030_pilon 36010..36957 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2034.t1 ID=Ggra2034.t1|Name=Ggra2034.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=316bp
MAFTASQAVPLRQVSTIPVTSPLRPSIARPAQKFRSTLRMVQKNAPVVNT
DPCLDTLLKSAYQFSTLLSIAAVSGIQGDKVSGTVFAPTNAAFAKLPAEL
LQMFMSDATAARNLILRHVVIDVVPASKLTGNGFLNAAFDGQLGYSSYGG
MQLKIDGASVTSFCDQKFDKGVVHAISGVLRPPSQKWPSFAQTYTAPAAT
APPVDGYANRRARGATITSTLGGRKAMGLMTQRPFWMYGPPYFAAKQEDY
EPISIAFPELSSVDYQLMPPGSVVVSPDSTSASELNPVSGMSKYIGQTKR
IVDGDGLSDYSRLDD*
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spliced messenger RNA

>Ggra2034.t1 ID=Ggra2034.t1|Name=Ggra2034.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=948bp|location=Sequence derived from alignment at tig00000030_pilon:36010..36957- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTCACGGCCTCTCAAGCAGTTCCCCTTCGCCAAGTATCCACCAT
TCCCGTCACGTCTCCGCTGCGGCCGTCCATCGCACGCCCTGCTCAAAAGT
TCCGGTCCACGCTGCGCATGGTGCAGAAGAACGCCCCCGTGGTGAACACA
GATCCGTGCCTCGACACACTTCTCAAATCGGCGTACCAGTTTTCCACTCT
ACTGAGCATCGCCGCCGTCAGCGGCATTCAAGGCGACAAGGTGAGCGGCA
CTGTATTTGCTCCCACCAATGCAGCGTTTGCAAAGCTTCCTGCAGAGTTG
CTGCAAATGTTCATGTCCGATGCCACAGCCGCTCGCAACCTGATTCTGCG
TCACGTGGTCATTGACGTGGTTCCCGCGAGCAAGCTCACCGGCAACGGAT
TCCTAAACGCGGCATTTGACGGACAGCTGGGCTACAGCTCGTACGGTGGA
ATGCAGCTCAAGATCGACGGCGCTTCCGTCACGTCGTTCTGCGACCAGAA
GTTCGACAAGGGAGTGGTACATGCCATTTCCGGCGTGTTACGACCACCGA
GTCAGAAATGGCCGTCCTTTGCACAGACGTATACTGCGCCAGCTGCCACC
GCGCCGCCGGTGGACGGGTATGCAAACAGGCGCGCACGAGGCGCCACAAT
AACCTCCACGTTAGGCGGTAGAAAAGCGATGGGACTCATGACACAGAGGC
CTTTCTGGATGTATGGGCCGCCGTATTTTGCCGCCAAGCAGGAGGATTAC
GAGCCCATTTCGATCGCATTCCCGGAGTTGTCATCTGTTGACTACCAGCT
CATGCCGCCGGGCAGTGTGGTTGTATCTCCAGATTCTACGAGCGCTTCCG
AGCTGAATCCCGTGAGTGGCATGAGCAAGTACATTGGTCAGACGAAGCGT
ATTGTGGACGGAGATGGGCTCTCAGACTACTCCAGACTTGACGACTAG
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protein sequence of Ggra2034.t1

>Ggra2034.t1 ID=Ggra2034.t1|Name=Ggra2034.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=316bp
MAFTASQAVPLRQVSTIPVTSPLRPSIARPAQKFRSTLRMVQKNAPVVNT
DPCLDTLLKSAYQFSTLLSIAAVSGIQGDKVSGTVFAPTNAAFAKLPAEL
LQMFMSDATAARNLILRHVVIDVVPASKLTGNGFLNAAFDGQLGYSSYGG
MQLKIDGASVTSFCDQKFDKGVVHAISGVLRPPSQKWPSFAQTYTAPAAT
APPVDGYANRRARGATITSTLGGRKAMGLMTQRPFWMYGPPYFAAKQEDY
EPISIAFPELSSVDYQLMPPGSVVVSPDSTSASELNPVSGMSKYIGQTKR
IVDGDGLSDYSRLDD*
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mRNA from alignment at tig00000030_pilon:36010..36957-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2034.t1 ID=Ggra2034.t1|Name=Ggra2034.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=948bp|location=Sequence derived from alignment at tig00000030_pilon:36010..36957- (Gracilaria gracilis GNS1m male)
ATGGCGTTCACGGCCTCTCAAGCAGTTCCCCTTCGCCAAGTATCCACCAT
TCCCGTCACGTCTCCGCTGCGGCCGTCCATCGCACGCCCTGCTCAAAAGT
TCCGGTCCACGCTGCGCATGGTGCAGAAGAACGCCCCCGTGGTGAACACA
GATCCGTGCCTCGACACACTTCTCAAATCGGCGTACCAGTTTTCCACTCT
ACTGAGCATCGCCGCCGTCAGCGGCATTCAAGGCGACAAGGTGAGCGGCA
CTGTATTTGCTCCCACCAATGCAGCGTTTGCAAAGCTTCCTGCAGAGTTG
CTGCAAATGTTCATGTCCGATGCCACAGCCGCTCGCAACCTGATTCTGCG
TCACGTGGTCATTGACGTGGTTCCCGCGAGCAAGCTCACCGGCAACGGAT
TCCTAAACGCGGCATTTGACGGACAGCTGGGCTACAGCTCGTACGGTGGA
ATGCAGCTCAAGATCGACGGCGCTTCCGTCACGTCGTTCTGCGACCAGAA
GTTCGACAAGGGAGTGGTACATGCCATTTCCGGCGTGTTACGACCACCGA
GTCAGAAATGGCCGTCCTTTGCACAGACGTATACTGCGCCAGCTGCCACC
GCGCCGCCGGTGGACGGGTATGCAAACAGGCGCGCACGAGGCGCCACAAT
AACCTCCACGTTAGGCGGTAGAAAAGCGATGGGACTCATGACACAGAGGC
CTTTCTGGATGTATGGGCCGCCGTATTTTGCCGCCAAGCAGGAGGATTAC
GAGCCCATTTCGATCGCATTCCCGGAGTTGTCATCTGTTGACTACCAGCT
CATGCCGCCGGGCAGTGTGGTTGTATCTCCAGATTCTACGAGCGCTTCCG
AGCTGAATCCCGTGAGTGGCATGAGCAAGTACATTGGTCAGACGAAGCGT
ATTGTGGACGGAGATGGGCTCTCAGACTACTCCAGACTTGACGACTAG
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Coding sequence (CDS) from alignment at tig00000030_pilon:36010..36957-

>Ggra2034.t1 ID=Ggra2034.t1|Name=Ggra2034.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=948bp|location=Sequence derived from alignment at tig00000030_pilon:36010..36957- (Gracilaria gracilis GNS1m male)
ATGGCGTTCACGGCCTCTCAAGCAGTTCCCCTTCGCCAAGTATCCACCAT
TCCCGTCACGTCTCCGCTGCGGCCGTCCATCGCACGCCCTGCTCAAAAGT
TCCGGTCCACGCTGCGCATGGTGCAGAAGAACGCCCCCGTGGTGAACACA
GATCCGTGCCTCGACACACTTCTCAAATCGGCGTACCAGTTTTCCACTCT
ACTGAGCATCGCCGCCGTCAGCGGCATTCAAGGCGACAAGGTGAGCGGCA
CTGTATTTGCTCCCACCAATGCAGCGTTTGCAAAGCTTCCTGCAGAGTTG
CTGCAAATGTTCATGTCCGATGCCACAGCCGCTCGCAACCTGATTCTGCG
TCACGTGGTCATTGACGTGGTTCCCGCGAGCAAGCTCACCGGCAACGGAT
TCCTAAACGCGGCATTTGACGGACAGCTGGGCTACAGCTCGTACGGTGGA
ATGCAGCTCAAGATCGACGGCGCTTCCGTCACGTCGTTCTGCGACCAGAA
GTTCGACAAGGGAGTGGTACATGCCATTTCCGGCGTGTTACGACCACCGA
GTCAGAAATGGCCGTCCTTTGCACAGACGTATACTGCGCCAGCTGCCACC
GCGCCGCCGGTGGACGGGTATGCAAACAGGCGCGCACGAGGCGCCACAAT
AACCTCCACGTTAGGCGGTAGAAAAGCGATGGGACTCATGACACAGAGGC
CTTTCTGGATGTATGGGCCGCCGTATTTTGCCGCCAAGCAGGAGGATTAC
GAGCCCATTTCGATCGCATTCCCGGAGTTGTCATCTGTTGACTACCAGCT
CATGCCGCCGGGCAGTGTGGTTGTATCTCCAGATTCTACGAGCGCTTCCG
AGCTGAATCCCGTGAGTGGCATGAGCAAGTACATTGGTCAGACGAAGCGT
ATTGTGGACGGAGATGGGCTCTCAGACTACTCCAGACTTGACGACTAG
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