Ggra11026.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11026.t1
Unique NameGgra11026.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length354
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000894_piloncontigtig00000894_pilon:37796..39014 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMM273CT
PFAMsFA_desaturase
Max annot lvl2759|Eukaryota
Evalue3.02e-44
EggNOG OGs2CXPI@1|root,2RYW0@2759|Eukaryota
DescriptionFatty acid desaturase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11026Ggra11026Gracilaria gracilis GNS1m malegenetig00000894_pilon 37796..39014 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11026.t1Ggra11026.t1Gracilaria gracilis GNS1m malepolypeptidetig00000894_pilon 37796..39014 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11026.t1.stop1Ggra11026.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000894_pilon 37796..37798 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11026.t1.CDS1Ggra11026.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000894_pilon 37796..37952 -
Ggra11026.t1.CDS2Ggra11026.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000894_pilon 38048..38069 -
Ggra11026.t1.CDS3Ggra11026.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000894_pilon 38132..39014 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11026.t1.exon1Ggra11026.t1.exon1Gracilaria gracilis GNS1m maleexontig00000894_pilon 37796..37952 -
Ggra11026.t1.exon2Ggra11026.t1.exon2Gracilaria gracilis GNS1m maleexontig00000894_pilon 38048..38069 -
Ggra11026.t1.exon3Ggra11026.t1.exon3Gracilaria gracilis GNS1m maleexontig00000894_pilon 38132..39014 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11026.t1.intron1Ggra11026.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000894_pilon 37953..38047 -
Ggra11026.t1.intron2Ggra11026.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000894_pilon 38070..38131 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11026.t1.start1Ggra11026.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000894_pilon 39012..39014 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11026.t1 ID=Ggra11026.t1|Name=Ggra11026.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=354bp
MSAQQPFDLPSTAREQVKGAQTSSIHAYPFFFPYLIPFLTLVTQNSSSPW
HALIPALVVWVIVPCLDHIILLTPDAQLTPIQRKQLDQRPIFLVAVHLWC
PTYFAILIWAAHHVNAVRLHPLQLFGLLSAVSLIAAESINVSHELLHRRN
RFERFLATLLLMAVQYGHFTIEHEKGHHFRAATPMDPATMRYGESFYQFL
PRTVVKGYLSAWRIESSRVRRLGFKVCSFHNQMLQFLAGQALFIFAFGVV
YGVKGIAVLLFQALFAVVLLEQVNAIEHYGLMRRLKQDGEFETMVASRPS
SSFIKAIPKPAEHGRKSSTSAWLPNVGTDVIDSAIMACCRGSSVEYIQIQ
MGR*
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spliced messenger RNA

>Ggra11026.t1 ID=Ggra11026.t1|Name=Ggra11026.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1062bp|location=Sequence derived from alignment at tig00000894_pilon:37796..39014- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCACAACAACCCTTTGACCTGCCTTCCACTGCACGCGAACAAGT
CAAGGGTGCACAGACTTCTTCAATTCACGCCTATCCGTTCTTCTTTCCAT
ACCTTATTCCCTTTCTCACTCTAGTCACGCAGAACTCTTCTTCACCATGG
CATGCTCTCATACCTGCACTTGTCGTCTGGGTTATCGTTCCTTGTCTTGA
TCATATCATCTTGCTCACTCCAGATGCGCAACTAACACCGATTCAACGAA
AGCAGCTGGATCAAAGACCAATATTCTTGGTGGCTGTCCACCTATGGTGC
CCAACATACTTTGCAATATTAATCTGGGCAGCGCACCACGTCAACGCCGT
ACGGTTGCACCCCTTGCAGCTTTTCGGCCTGCTTTCGGCTGTTAGTCTTA
TCGCTGCGGAGAGTATCAATGTTTCCCACGAGCTTCTACACCGTCGCAAC
AGATTTGAACGTTTTCTCGCTACGCTTCTATTGATGGCAGTTCAGTACGG
ACACTTCACCATAGAGCATGAGAAAGGACATCATTTTCGTGCAGCAACGC
CCATGGACCCGGCTACAATGCGTTATGGGGAGTCTTTCTACCAGTTCTTA
CCAAGGACTGTTGTCAAGGGATACTTATCTGCATGGCGAATAGAGAGCTC
TAGAGTACGGCGTCTGGGCTTCAAGGTCTGTTCGTTCCATAATCAAATGT
TGCAGTTCCTAGCAGGTCAGGCATTGTTTATCTTCGCGTTCGGGGTTGTT
TATGGTGTCAAAGGAATCGCAGTACTGTTGTTTCAAGCGCTGTTTGCTGT
TGTGCTTCTGGAGCAGGTGAATGCCATCGAACATTATGGGCTGATGAGAC
GATTGAAACAGGACGGAGAGTTTGAAACGATGGTTGCATCCCGACCATCA
TCTTCATTCATCAAGGCGATACCAAAGCCTGCAGAACACGGAAGGAAGTC
CTCGACTTCCGCATGGCTACCTAACGTTGGCACCGATGTTATTGATTCCG
CCATTATGGCGTGCTGTCGTGGATCCAGTGTTGAATACATACAAATCCAA
ATGGGCAGATGA
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protein sequence of Ggra11026.t1

>Ggra11026.t1 ID=Ggra11026.t1|Name=Ggra11026.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=354bp
MSAQQPFDLPSTAREQVKGAQTSSIHAYPFFFPYLIPFLTLVTQNSSSPW
HALIPALVVWVIVPCLDHIILLTPDAQLTPIQRKQLDQRPIFLVAVHLWC
PTYFAILIWAAHHVNAVRLHPLQLFGLLSAVSLIAAESINVSHELLHRRN
RFERFLATLLLMAVQYGHFTIEHEKGHHFRAATPMDPATMRYGESFYQFL
PRTVVKGYLSAWRIESSRVRRLGFKVCSFHNQMLQFLAGQALFIFAFGVV
YGVKGIAVLLFQALFAVVLLEQVNAIEHYGLMRRLKQDGEFETMVASRPS
SSFIKAIPKPAEHGRKSSTSAWLPNVGTDVIDSAIMACCRGSSVEYIQIQ
MGR*
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mRNA from alignment at tig00000894_pilon:37796..39014-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11026.t1 ID=Ggra11026.t1|Name=Ggra11026.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1219bp|location=Sequence derived from alignment at tig00000894_pilon:37796..39014- (Gracilaria gracilis GNS1m male)
ATGTCCGCACAACAACCCTTTGACCTGCCTTCCACTGCACGCGAACAAGT
CAAGGGTGCACAGACTTCTTCAATTCACGCCTATCCGTTCTTCTTTCCAT
ACCTTATTCCCTTTCTCACTCTAGTCACGCAGAACTCTTCTTCACCATGG
CATGCTCTCATACCTGCACTTGTCGTCTGGGTTATCGTTCCTTGTCTTGA
TCATATCATCTTGCTCACTCCAGATGCGCAACTAACACCGATTCAACGAA
AGCAGCTGGATCAAAGACCAATATTCTTGGTGGCTGTCCACCTATGGTGC
CCAACATACTTTGCAATATTAATCTGGGCAGCGCACCACGTCAACGCCGT
ACGGTTGCACCCCTTGCAGCTTTTCGGCCTGCTTTCGGCTGTTAGTCTTA
TCGCTGCGGAGAGTATCAATGTTTCCCACGAGCTTCTACACCGTCGCAAC
AGATTTGAACGTTTTCTCGCTACGCTTCTATTGATGGCAGTTCAGTACGG
ACACTTCACCATAGAGCATGAGAAAGGACATCATTTTCGTGCAGCAACGC
CCATGGACCCGGCTACAATGCGTTATGGGGAGTCTTTCTACCAGTTCTTA
CCAAGGACTGTTGTCAAGGGATACTTATCTGCATGGCGAATAGAGAGCTC
TAGAGTACGGCGTCTGGGCTTCAAGGTCTGTTCGTTCCATAATCAAATGT
TGCAGTTCCTAGCAGGTCAGGCATTGTTTATCTTCGCGTTCGGGGTTGTT
TATGGTGTCAAAGGAATCGCAGTACTGTTGTTTCAAGCGCTGTTTGCTGT
TGTGCTTCTGGAGCAGGTGAATGCCATCGAACATTATGGGCTGATGAGAC
GATTGAAACAGGACGGAGAGTTTGAAACGATGGGTCCGCGACATAGTTGG
GATGCGCCTTTGCGAATTTCTAATTTCGTTATGTTCAAGCTCCAGTTGCA
TCCCGACCATCATCTTCGTAAGTTCCAAGATCTGGGTACGGCTTCTCATA
CATGCAAACATAGAAACTGACTTCTTTTTTTCTGTCTCCCTCCCTCCTTA
TCGAACTAATAGATTCATCAAGGCGATACCAAAGCCTGCAGAACACGGAA
GGAAGTCCTCGACTTCCGCATGGCTACCTAACGTTGGCACCGATGTTATT
GATTCCGCCATTATGGCGTGCTGTCGTGGATCCAGTGTTGAATACATACA
AATCCAAATGGGCAGATGA
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Coding sequence (CDS) from alignment at tig00000894_pilon:37796..39014-

>Ggra11026.t1 ID=Ggra11026.t1|Name=Ggra11026.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1062bp|location=Sequence derived from alignment at tig00000894_pilon:37796..39014- (Gracilaria gracilis GNS1m male)
ATGTCCGCACAACAACCCTTTGACCTGCCTTCCACTGCACGCGAACAAGT
CAAGGGTGCACAGACTTCTTCAATTCACGCCTATCCGTTCTTCTTTCCAT
ACCTTATTCCCTTTCTCACTCTAGTCACGCAGAACTCTTCTTCACCATGG
CATGCTCTCATACCTGCACTTGTCGTCTGGGTTATCGTTCCTTGTCTTGA
TCATATCATCTTGCTCACTCCAGATGCGCAACTAACACCGATTCAACGAA
AGCAGCTGGATCAAAGACCAATATTCTTGGTGGCTGTCCACCTATGGTGC
CCAACATACTTTGCAATATTAATCTGGGCAGCGCACCACGTCAACGCCGT
ACGGTTGCACCCCTTGCAGCTTTTCGGCCTGCTTTCGGCTGTTAGTCTTA
TCGCTGCGGAGAGTATCAATGTTTCCCACGAGCTTCTACACCGTCGCAAC
AGATTTGAACGTTTTCTCGCTACGCTTCTATTGATGGCAGTTCAGTACGG
ACACTTCACCATAGAGCATGAGAAAGGACATCATTTTCGTGCAGCAACGC
CCATGGACCCGGCTACAATGCGTTATGGGGAGTCTTTCTACCAGTTCTTA
CCAAGGACTGTTGTCAAGGGATACTTATCTGCATGGCGAATAGAGAGCTC
TAGAGTACGGCGTCTGGGCTTCAAGGTCTGTTCGTTCCATAATCAAATGT
TGCAGTTCCTAGCAGGTCAGGCATTGTTTATCTTCGCGTTCGGGGTTGTT
TATGGTGTCAAAGGAATCGCAGTACTGTTGTTTCAAGCGCTGTTTGCTGT
TGTGCTTCTGGAGCAGGTGAATGCCATCGAACATTATGGGCTGATGAGAC
GATTGAAACAGGACGGAGAGTTTGAAACGATGGTTGCATCCCGACCATCA
TCTTCATTCATCAAGGCGATACCAAAGCCTGCAGAACACGGAAGGAAGTC
CTCGACTTCCGCATGGCTACCTAACGTTGGCACCGATGTTATTGATTCCG
CCATTATGGCGTGCTGTCGTGGATCCAGTGTTGAATACATACAAATCCAA
ATGGGCAGATGA
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