Ggra11034.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11034.t1
Unique NameGgra11034.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length108
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000894_piloncontigtig00000894_pilon:167191..167845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8128.ENSONIP00000022050
Preferred nameBNC2
PFAMszf-C2H2,zf-met
Max annot lvl33208|Metazoa
GOsGO:0000976,GO:0000981,GO:0001067,GO:0001158,GO:0001837,GO:0001894,GO:0001895,GO:0002009,GO:0002165,GO:0003002,GO:0003416,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006355,GO:0006357,GO:0007162,GO:0007275,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007444,GO:0007447,GO:0007449,GO:0007469,GO:0007472,GO:0007476,GO:0007479,GO:0007552,GO:0007560,GO:0007562,GO:0007610,GO:0007622,GO:0007623,GO:0007626,GO:0008062,GO:0008150,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009954,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0022407,GO:0022408,GO:0030154,GO:0030155,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0035107,GO:0035114,GO:0035120,GO:0035214,GO:0035218,GO:0035220,GO:0035223,GO:0035239,GO:0035265,GO:0035295,GO:0035326,GO:0040007,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043565,GO:0043586,GO:0044212,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045475,GO:0045494,GO:0045893,GO:0045935,GO:0045944,GO:0048511,GO:0048512,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048526,GO:0048563,GO:0048569,GO:0048589,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048762,GO:0048856,GO:0048869,GO:0048871,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060021,GO:0060232,GO:0060249,GO:0060255,GO:0060322,GO:0060429,GO:0060485,GO:0060560,GO:0060562,GO:0065007,GO:0065008,GO:0070013,GO:0071684,GO:0080090,GO:0097159,GO:0098868,GO:0140110,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141
Evalue0.000362
EggNOG OGs2C0EZ@1|root,2QR8N@2759|Eukaryota,38G6S@33154|Opisthokonta,3BE8N@33208|Metazoa,3CVQD@33213|Bilateria,47ZFA@7711|Chordata,493V9@7742|Vertebrata,49YSF@7898|Actinopterygii
DescriptionBasonuclin 2
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11034Ggra11034Gracilaria gracilis GNS1m malegenetig00000894_pilon 167191..167859 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11034.t1Ggra11034.t1Gracilaria gracilis GNS1m malepolypeptidetig00000894_pilon 167191..167845 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11034.t1.start1Ggra11034.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000894_pilon 167191..167193 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11034.t1.CDS1Ggra11034.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000894_pilon 167191..167264 +
Ggra11034.t1.CDS2Ggra11034.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000894_pilon 167398..167420 +
Ggra11034.t1.CDS3Ggra11034.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000894_pilon 167549..167682 +
Ggra11034.t1.CDS4Ggra11034.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000894_pilon 167753..167845 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11034.t1.exon1Ggra11034.t1.exon1Gracilaria gracilis GNS1m maleexontig00000894_pilon 167191..167264 +
Ggra11034.t1.exon2Ggra11034.t1.exon2Gracilaria gracilis GNS1m maleexontig00000894_pilon 167398..167420 +
Ggra11034.t1.exon3Ggra11034.t1.exon3Gracilaria gracilis GNS1m maleexontig00000894_pilon 167549..167682 +
Ggra11034.t1.exon4Ggra11034.t1.exon4Gracilaria gracilis GNS1m maleexontig00000894_pilon 167753..167845 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11034.t1.intron1Ggra11034.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000894_pilon 167265..167397 +
Ggra11034.t1.intron2Ggra11034.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000894_pilon 167421..167548 +
Ggra11034.t1.intron3Ggra11034.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000894_pilon 167683..167752 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11034.t1.stop1Ggra11034.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000894_pilon 167843..167845 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11034.t1 ID=Ggra11034.t1|Name=Ggra11034.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=108bp
MSNQGSSSRGRKKKKIYCPEPSCTTQKPFTSESSYSRHTNYFHKGGGEGQ
RGSHECESCGNTYMDKNALKTHIKAKHESPRYDCPNPTCNESYPSQESLD
QHLLRHI*
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spliced messenger RNA

>Ggra11034.t1 ID=Ggra11034.t1|Name=Ggra11034.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=324bp|location=Sequence derived from alignment at tig00000894_pilon:167191..167845+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAACCAAGGTTCTAGTTCGCGTGGTAGGAAGAAGAAGAAGATATA
CTGCCCCGAACCCTCATGCACCACTCAAAAACCGTTTACTTCAGAGTCTT
CGTATAGCAGGCATACGAATTACTTCCACAAAGGTGGCGGGGAAGGGCAA
AGGGGTTCACACGAATGTGAGTCGTGTGGAAACACATACATGGATAAGAA
CGCTTTAAAAACTCACATCAAAGCGAAGCATGAGAGTCCCAGGTATGACT
GTCCAAATCCGACCTGCAATGAAAGCTATCCAAGCCAAGAGAGTCTAGAC
CAACATCTTCTGCGACACATCTGA
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protein sequence of Ggra11034.t1

>Ggra11034.t1 ID=Ggra11034.t1|Name=Ggra11034.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=108bp
MSNQGSSSRGRKKKKIYCPEPSCTTQKPFTSESSYSRHTNYFHKGGGEGQ
RGSHECESCGNTYMDKNALKTHIKAKHESPRYDCPNPTCNESYPSQESLD
QHLLRHI*
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mRNA from alignment at tig00000894_pilon:167191..167845+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11034.t1 ID=Ggra11034.t1|Name=Ggra11034.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=655bp|location=Sequence derived from alignment at tig00000894_pilon:167191..167845+ (Gracilaria gracilis GNS1m male)
ATGTCCAACCAAGGTTCTAGTTCGCGTGGTAGGAAGAAGAAGAAGATATA
CTGCCCCGAACCCTCATGCACCACGTACGTTACAATGGTATTCTTATTCG
AAACGAGTGGTGTAGCCTGCGAGTTAGTTGTTATCGAAGCGTGTTGGTTT
ATAAAGGTGGAGCATCTGACCCAATGCCATATTTGATATCAAAATATACT
GTTGAAGTCAAAAACCGTTTACTTCAGAGTGTGAGTACCTTAACCTCAAT
GTGTAATAGGGCCCATAGGACTGCAATCCAAGAGAAAGCCTTTTGGGACC
CGAGATCTGATCTCCGGTCAAATTCAATAACTAACTTCATTTGTTCTTCA
TCTGAAAGCTTCGTATAGCAGGCATACGAATTACTTCCACAAAGGTGGCG
GGGAAGGGCAAAGGGGTTCACACGAATGTGAGTCGTGTGGAAACACATAC
ATGGATAAGAACGCTTTAAAAACTCACATCAAAGCGAAGCATGTAAGTGC
TCTCGAAGTTTTCTGTTCTTCTGCCAGAAACAGTATTTAACTAAACGAAA
CGAGGAATACAGGAGAGTCCCAGGTATGACTGTCCAAATCCGACCTGCAA
TGAAAGCTATCCAAGCCAAGAGAGTCTAGACCAACATCTTCTGCGACACA
TCTGA
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Coding sequence (CDS) from alignment at tig00000894_pilon:167191..167845+

>Ggra11034.t1 ID=Ggra11034.t1|Name=Ggra11034.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=324bp|location=Sequence derived from alignment at tig00000894_pilon:167191..167845+ (Gracilaria gracilis GNS1m male)
ATGTCCAACCAAGGTTCTAGTTCGCGTGGTAGGAAGAAGAAGAAGATATA
CTGCCCCGAACCCTCATGCACCACTCAAAAACCGTTTACTTCAGAGTCTT
CGTATAGCAGGCATACGAATTACTTCCACAAAGGTGGCGGGGAAGGGCAA
AGGGGTTCACACGAATGTGAGTCGTGTGGAAACACATACATGGATAAGAA
CGCTTTAAAAACTCACATCAAAGCGAAGCATGAGAGTCCCAGGTATGACT
GTCCAAATCCGACCTGCAATGAAAGCTATCCAAGCCAAGAGAGTCTAGAC
CAACATCTTCTGCGACACATCTGA
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