Ggra11024.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra11024.t1
Unique Name	Ggra11024.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	590

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000894_pilon	contig	tig00000894_pilon:34322..36091 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra11024	Ggra11024	Gracilaria gracilis GNS1m male	gene	tig00000894_pilon 34322..36091 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11024.t1.start1	Ggra11024.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000894_pilon 34322..34324 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11024.t1.CDS1	Ggra11024.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000894_pilon 34322..36091 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11024.t1.exon1	Ggra11024.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000894_pilon 34322..36091 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11024.t1.stop1	Ggra11024.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000894_pilon 36089..36091 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11024.t1	Ggra11024.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000894_pilon 34322..36091 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000894_pilon:34322..36091+
coding sequence from alignment at tig00000894_pilon:34322..36091+

mRNA sequence

>Ggra11024.t1 ID=Ggra11024.t1|Name=Ggra11024.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=590bp
MTASPHHAHYTNEPPPPAVSLSNTHIELLISTYNDVFSSLRTNSYALAWI
LRAAFDTGYTSEDRRPDLNLSRGYSLLYVCARPSCASHLSETILQRTNTL
LLPTQSRGQFVLGLFFDHVQNASSPPTTHIGRYTYSSVPGELFKCTRVEG
TSPSNPSVIISRLILVNRTIFILDTVLVSFRYPTFTAVPENILLYSRRFS
FHKLSTPLPPPQTPDGSFLGLADFGVYDSLSLPCPIPPGMRQVDSSHAIR
TVPAHTSVCQAPRSMIVGILQDHLDRLRASYLQLVAADARLSLPMRTVDP
FVPPRTNDVPQRRTMSPQPHQASFASQSSQPNQLTQQFSFPAQLMPGTDD
TIHHAEGNARHFADCRMEAPRVPSDIPVSSPRLHVPQRLLPNNTMHESSA
FPAREIAPSIAQVNPQLLPSSDPDLCSTVSGRESVHRARRGSQRILLGNG
ADMTPTVRVNEVAAGMPRMSSRVLPANSANTSSSIIFQEATDNTATIVNK
PPKEQPVPPFKKTLPAPTKSEIVIRNRISAQRSNEKRRRRIENTKMELAY
LKAYLPSLEQRKGCLIEENQSLKLRFIQRYREADIESFF*

spliced messenger RNA

>Ggra11024.t1 ID=Ggra11024.t1|Name=Ggra11024.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1770bp|location=Sequence derived from alignment at tig00000894_pilon:34322..36091+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCCTCCCCACACCACGCCCACTACACCAACGAGCCCCCGCCGCC
CGCCGTGTCGCTCTCTAATACCCACATCGAGCTCCTGATATCCACGTACA
ACGACGTCTTCAGCAGCCTTCGCACCAACTCCTATGCGCTCGCTTGGATC
TTGCGCGCAGCCTTCGACACCGGCTATACCTCGGAAGACCGCCGCCCTGA
CCTCAACCTTTCTCGCGGTTATAGCCTGTTGTACGTCTGTGCCCGCCCGT
CGTGCGCATCTCACTTGTCCGAGACCATCCTGCAGCGCACAAACACCCTG
CTCTTACCCACGCAAAGTCGCGGCCAGTTTGTGCTCGGATTGTTCTTCGA
CCACGTTCAGAACGCCTCGTCTCCCCCTACCACCCATATCGGTCGCTACA
CTTATTCTTCCGTGCCCGGTGAATTATTCAAGTGCACTCGCGTTGAAGGT
ACCAGCCCTTCGAATCCCAGCGTCATCATCTCGCGTTTGATTCTCGTAAA
CCGTACTATCTTCATACTCGACACCGTGCTTGTTTCTTTTCGCTACCCGA
CCTTCACCGCAGTCCCGGAAAACATCTTATTGTATTCGCGCCGATTTTCT
TTTCATAAGCTCTCTACCCCTCTTCCGCCCCCACAGACCCCCGATGGCTC
GTTCTTGGGTCTAGCCGACTTTGGCGTGTACGATTCGCTTTCGCTACCGT
GTCCCATTCCGCCTGGCATGCGACAGGTTGACTCTTCGCATGCGATTCGC
ACTGTCCCTGCTCACACTTCCGTGTGTCAAGCACCTCGCTCCATGATCGT
TGGCATTCTTCAGGATCACCTCGACCGATTACGAGCCTCATACTTGCAGC
TGGTTGCCGCAGATGCCCGTTTATCCCTGCCGATGAGAACAGTGGATCCT
TTCGTCCCGCCCAGAACGAACGATGTGCCTCAACGACGCACCATGTCCCC
GCAACCTCACCAAGCTTCGTTCGCCTCTCAATCATCCCAACCGAATCAAC
TTACGCAGCAGTTCTCGTTTCCTGCTCAACTAATGCCGGGTACCGATGAT
ACCATCCACCACGCCGAAGGCAATGCTCGCCACTTCGCTGATTGCCGCAT
GGAAGCCCCTCGTGTCCCATCGGACATACCGGTCTCTTCACCGCGTTTGC
ACGTGCCTCAGCGGCTGCTACCGAACAACACGATGCACGAAAGCTCAGCG
TTCCCCGCTCGAGAAATCGCCCCAAGCATCGCTCAGGTCAACCCCCAACT
TTTGCCAAGCAGTGATCCAGATCTATGCTCAACTGTGTCTGGGAGAGAAT
CTGTTCACCGCGCTCGTCGTGGTTCTCAGAGAATCCTGCTTGGCAATGGG
GCAGATATGACTCCAACTGTACGCGTTAATGAAGTTGCCGCCGGTATGCC
GCGTATGTCTTCACGCGTGCTGCCGGCCAATAGTGCTAACACTAGTTCTA
GCATAATCTTCCAAGAAGCCACGGATAATACGGCAACTATCGTAAACAAA
CCGCCAAAAGAGCAGCCAGTGCCTCCGTTTAAGAAGACCTTGCCTGCTCC
AACAAAGAGCGAAATCGTTATTCGTAATCGTATCTCAGCGCAGCGAAGTA
ATGAGAAGCGCAGACGGAGAATTGAGAACACGAAAATGGAACTGGCGTAT
CTGAAAGCTTATTTGCCATCTTTGGAACAACGGAAAGGATGCCTGATAGA
GGAGAACCAGTCCCTCAAGTTGCGCTTCATCCAACGGTATCGAGAGGCCG
ATATCGAATCCTTCTTTTAG

protein sequence of Ggra11024.t1

>Ggra11024.t1 ID=Ggra11024.t1|Name=Ggra11024.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=590bp
MTASPHHAHYTNEPPPPAVSLSNTHIELLISTYNDVFSSLRTNSYALAWI
LRAAFDTGYTSEDRRPDLNLSRGYSLLYVCARPSCASHLSETILQRTNTL
LLPTQSRGQFVLGLFFDHVQNASSPPTTHIGRYTYSSVPGELFKCTRVEG
TSPSNPSVIISRLILVNRTIFILDTVLVSFRYPTFTAVPENILLYSRRFS
FHKLSTPLPPPQTPDGSFLGLADFGVYDSLSLPCPIPPGMRQVDSSHAIR
TVPAHTSVCQAPRSMIVGILQDHLDRLRASYLQLVAADARLSLPMRTVDP
FVPPRTNDVPQRRTMSPQPHQASFASQSSQPNQLTQQFSFPAQLMPGTDD
TIHHAEGNARHFADCRMEAPRVPSDIPVSSPRLHVPQRLLPNNTMHESSA
FPAREIAPSIAQVNPQLLPSSDPDLCSTVSGRESVHRARRGSQRILLGNG
ADMTPTVRVNEVAAGMPRMSSRVLPANSANTSSSIIFQEATDNTATIVNK
PPKEQPVPPFKKTLPAPTKSEIVIRNRISAQRSNEKRRRRIENTKMELAY
LKAYLPSLEQRKGCLIEENQSLKLRFIQRYREADIESFF*

mRNA from alignment at tig00000894_pilon:34322..36091+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra11024.t1 ID=Ggra11024.t1|Name=Ggra11024.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1770bp|location=Sequence derived from alignment at tig00000894_pilon:34322..36091+ (Gracilaria gracilis GNS1m male)
ATGACCGCCTCCCCACACCACGCCCACTACACCAACGAGCCCCCGCCGCC
CGCCGTGTCGCTCTCTAATACCCACATCGAGCTCCTGATATCCACGTACA
ACGACGTCTTCAGCAGCCTTCGCACCAACTCCTATGCGCTCGCTTGGATC
TTGCGCGCAGCCTTCGACACCGGCTATACCTCGGAAGACCGCCGCCCTGA
CCTCAACCTTTCTCGCGGTTATAGCCTGTTGTACGTCTGTGCCCGCCCGT
CGTGCGCATCTCACTTGTCCGAGACCATCCTGCAGCGCACAAACACCCTG
CTCTTACCCACGCAAAGTCGCGGCCAGTTTGTGCTCGGATTGTTCTTCGA
CCACGTTCAGAACGCCTCGTCTCCCCCTACCACCCATATCGGTCGCTACA
CTTATTCTTCCGTGCCCGGTGAATTATTCAAGTGCACTCGCGTTGAAGGT
ACCAGCCCTTCGAATCCCAGCGTCATCATCTCGCGTTTGATTCTCGTAAA
CCGTACTATCTTCATACTCGACACCGTGCTTGTTTCTTTTCGCTACCCGA
CCTTCACCGCAGTCCCGGAAAACATCTTATTGTATTCGCGCCGATTTTCT
TTTCATAAGCTCTCTACCCCTCTTCCGCCCCCACAGACCCCCGATGGCTC
GTTCTTGGGTCTAGCCGACTTTGGCGTGTACGATTCGCTTTCGCTACCGT
GTCCCATTCCGCCTGGCATGCGACAGGTTGACTCTTCGCATGCGATTCGC
ACTGTCCCTGCTCACACTTCCGTGTGTCAAGCACCTCGCTCCATGATCGT
TGGCATTCTTCAGGATCACCTCGACCGATTACGAGCCTCATACTTGCAGC
TGGTTGCCGCAGATGCCCGTTTATCCCTGCCGATGAGAACAGTGGATCCT
TTCGTCCCGCCCAGAACGAACGATGTGCCTCAACGACGCACCATGTCCCC
GCAACCTCACCAAGCTTCGTTCGCCTCTCAATCATCCCAACCGAATCAAC
TTACGCAGCAGTTCTCGTTTCCTGCTCAACTAATGCCGGGTACCGATGAT
ACCATCCACCACGCCGAAGGCAATGCTCGCCACTTCGCTGATTGCCGCAT
GGAAGCCCCTCGTGTCCCATCGGACATACCGGTCTCTTCACCGCGTTTGC
ACGTGCCTCAGCGGCTGCTACCGAACAACACGATGCACGAAAGCTCAGCG
TTCCCCGCTCGAGAAATCGCCCCAAGCATCGCTCAGGTCAACCCCCAACT
TTTGCCAAGCAGTGATCCAGATCTATGCTCAACTGTGTCTGGGAGAGAAT
CTGTTCACCGCGCTCGTCGTGGTTCTCAGAGAATCCTGCTTGGCAATGGG
GCAGATATGACTCCAACTGTACGCGTTAATGAAGTTGCCGCCGGTATGCC
GCGTATGTCTTCACGCGTGCTGCCGGCCAATAGTGCTAACACTAGTTCTA
GCATAATCTTCCAAGAAGCCACGGATAATACGGCAACTATCGTAAACAAA
CCGCCAAAAGAGCAGCCAGTGCCTCCGTTTAAGAAGACCTTGCCTGCTCC
AACAAAGAGCGAAATCGTTATTCGTAATCGTATCTCAGCGCAGCGAAGTA
ATGAGAAGCGCAGACGGAGAATTGAGAACACGAAAATGGAACTGGCGTAT
CTGAAAGCTTATTTGCCATCTTTGGAACAACGGAAAGGATGCCTGATAGA
GGAGAACCAGTCCCTCAAGTTGCGCTTCATCCAACGGTATCGAGAGGCCG
ATATCGAATCCTTCTTTTAG

Coding sequence (CDS) from alignment at tig00000894_pilon:34322..36091+

>Ggra11024.t1 ID=Ggra11024.t1|Name=Ggra11024.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1770bp|location=Sequence derived from alignment at tig00000894_pilon:34322..36091+ (Gracilaria gracilis GNS1m male)
ATGACCGCCTCCCCACACCACGCCCACTACACCAACGAGCCCCCGCCGCC
CGCCGTGTCGCTCTCTAATACCCACATCGAGCTCCTGATATCCACGTACA
ACGACGTCTTCAGCAGCCTTCGCACCAACTCCTATGCGCTCGCTTGGATC
TTGCGCGCAGCCTTCGACACCGGCTATACCTCGGAAGACCGCCGCCCTGA
CCTCAACCTTTCTCGCGGTTATAGCCTGTTGTACGTCTGTGCCCGCCCGT
CGTGCGCATCTCACTTGTCCGAGACCATCCTGCAGCGCACAAACACCCTG
CTCTTACCCACGCAAAGTCGCGGCCAGTTTGTGCTCGGATTGTTCTTCGA
CCACGTTCAGAACGCCTCGTCTCCCCCTACCACCCATATCGGTCGCTACA
CTTATTCTTCCGTGCCCGGTGAATTATTCAAGTGCACTCGCGTTGAAGGT
ACCAGCCCTTCGAATCCCAGCGTCATCATCTCGCGTTTGATTCTCGTAAA
CCGTACTATCTTCATACTCGACACCGTGCTTGTTTCTTTTCGCTACCCGA
CCTTCACCGCAGTCCCGGAAAACATCTTATTGTATTCGCGCCGATTTTCT
TTTCATAAGCTCTCTACCCCTCTTCCGCCCCCACAGACCCCCGATGGCTC
GTTCTTGGGTCTAGCCGACTTTGGCGTGTACGATTCGCTTTCGCTACCGT
GTCCCATTCCGCCTGGCATGCGACAGGTTGACTCTTCGCATGCGATTCGC
ACTGTCCCTGCTCACACTTCCGTGTGTCAAGCACCTCGCTCCATGATCGT
TGGCATTCTTCAGGATCACCTCGACCGATTACGAGCCTCATACTTGCAGC
TGGTTGCCGCAGATGCCCGTTTATCCCTGCCGATGAGAACAGTGGATCCT
TTCGTCCCGCCCAGAACGAACGATGTGCCTCAACGACGCACCATGTCCCC
GCAACCTCACCAAGCTTCGTTCGCCTCTCAATCATCCCAACCGAATCAAC
TTACGCAGCAGTTCTCGTTTCCTGCTCAACTAATGCCGGGTACCGATGAT
ACCATCCACCACGCCGAAGGCAATGCTCGCCACTTCGCTGATTGCCGCAT
GGAAGCCCCTCGTGTCCCATCGGACATACCGGTCTCTTCACCGCGTTTGC
ACGTGCCTCAGCGGCTGCTACCGAACAACACGATGCACGAAAGCTCAGCG
TTCCCCGCTCGAGAAATCGCCCCAAGCATCGCTCAGGTCAACCCCCAACT
TTTGCCAAGCAGTGATCCAGATCTATGCTCAACTGTGTCTGGGAGAGAAT
CTGTTCACCGCGCTCGTCGTGGTTCTCAGAGAATCCTGCTTGGCAATGGG
GCAGATATGACTCCAACTGTACGCGTTAATGAAGTTGCCGCCGGTATGCC
GCGTATGTCTTCACGCGTGCTGCCGGCCAATAGTGCTAACACTAGTTCTA
GCATAATCTTCCAAGAAGCCACGGATAATACGGCAACTATCGTAAACAAA
CCGCCAAAAGAGCAGCCAGTGCCTCCGTTTAAGAAGACCTTGCCTGCTCC
AACAAAGAGCGAAATCGTTATTCGTAATCGTATCTCAGCGCAGCGAAGTA
ATGAGAAGCGCAGACGGAGAATTGAGAACACGAAAATGGAACTGGCGTAT
CTGAAAGCTTATTTGCCATCTTTGGAACAACGGAAAGGATGCCTGATAGA
GGAGAACCAGTCCCTCAAGTTGCGCTTCATCCAACGGTATCGAGAGGCCG
ATATCGAATCCTTCTTTTAG