Ggra11032.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra11032.t1
Unique Name	Ggra11032.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	251

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000894_pilon	contig	tig00000894_pilon:99361..106802 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra11032	Ggra11032	Gracilaria gracilis GNS1m male	gene	tig00000894_pilon 99361..106802 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11032.t1	Ggra11032.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000894_pilon 99361..106802 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11032.t1.start1	Ggra11032.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000894_pilon 99361..99363 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11032.t1.CDS1	Ggra11032.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000894_pilon 99361..99910 +
Ggra11032.t1.CDS2	Ggra11032.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000894_pilon 106600..106802 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11032.t1.exon1	Ggra11032.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000894_pilon 99361..99910 +
Ggra11032.t1.exon2	Ggra11032.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000894_pilon 106600..106802 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11032.t1.intron1	Ggra11032.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000894_pilon 99911..106599 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11032.t1.stop1	Ggra11032.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000894_pilon 106800..106802 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000894_pilon:99361..106802+
coding sequence from alignment at tig00000894_pilon:99361..106802+

mRNA sequence

>Ggra11032.t1 ID=Ggra11032.t1|Name=Ggra11032.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=251bp
MLDVLGYKRQSDGYSCGCYVIRSATEFAAETGFAPKTARNTGMSPQASEV
YRWMVIRSRGLQILLASQFYGKDLVHESMVAEYRLNCRLYYFKCREEGKG
RLKKMRSPILRSGDLSIVSRKPILSVIKQGLPTSTRGSQPATRTSRSRTD
NDDGGNDDGGNDEGIDQVEEMATIDTEEVTDLGTADLAIADASLMPVEIA
AVQASLNSASDLNSLVSNTFLEYSFFNATVDLDLGFSGQLNGVELQNELN
*

spliced messenger RNA

>Ggra11032.t1 ID=Ggra11032.t1|Name=Ggra11032.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=753bp|location=Sequence derived from alignment at tig00000894_pilon:99361..106802+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGACGTTTTAGGATACAAACGCCAAAGCGATGGCTATAGTTGCGG
TTGCTACGTTATTCGATCTGCAACTGAGTTTGCTGCGGAAACAGGGTTTG
CACCGAAAACAGCCCGAAACACTGGAATGAGCCCACAGGCTTCTGAAGTC
TACCGATGGATGGTCATAAGGAGTCGTGGGCTGCAAATCCTTTTAGCGTC
TCAGTTCTACGGAAAAGACCTCGTCCACGAGTCAATGGTGGCAGAGTACC
GTTTGAACTGCCGATTGTATTATTTTAAGTGTCGAGAAGAGGGTAAAGGG
CGTCTAAAGAAGATGAGAAGTCCAATTTTAAGAAGTGGTGATCTCAGCAT
CGTTAGCCGAAAGCCTATTTTAAGCGTTATTAAGCAGGGATTGCCAACTA
GTACTAGAGGCTCCCAGCCGGCTACGCGCACTTCGAGATCGAGGACGGAC
AACGATGATGGTGGTAACGATGACGGTGGTAATGATGAGGGTATTGATCA
AGTAGAAGAGATGGCAACTATTGATACGGAGGAGGTCACTGACCTTGGCA
CTGCAGATTTGGCGATTGCTGATGCTTCGCTAATGCCCGTCGAAATTGCA
GCAGTCCAAGCGTCTTTGAATTCTGCATCTGACCTGAACTCGTTGGTCTC
TAATACTTTTCTCGAATACTCCTTCTTCAATGCCACGGTCGATCTGGACC
TAGGATTCAGTGGGCAGCTCAACGGTGTAGAGCTGCAGAACGAGTTAAAC
TAA

protein sequence of Ggra11032.t1

>Ggra11032.t1 ID=Ggra11032.t1|Name=Ggra11032.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=251bp
MLDVLGYKRQSDGYSCGCYVIRSATEFAAETGFAPKTARNTGMSPQASEV
YRWMVIRSRGLQILLASQFYGKDLVHESMVAEYRLNCRLYYFKCREEGKG
RLKKMRSPILRSGDLSIVSRKPILSVIKQGLPTSTRGSQPATRTSRSRTD
NDDGGNDDGGNDEGIDQVEEMATIDTEEVTDLGTADLAIADASLMPVEIA
AVQASLNSASDLNSLVSNTFLEYSFFNATVDLDLGFSGQLNGVELQNELN
*

mRNA from alignment at tig00000894_pilon:99361..106802+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra11032.t1 ID=Ggra11032.t1|Name=Ggra11032.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=7442bp|location=Sequence derived from alignment at tig00000894_pilon:99361..106802+ (Gracilaria gracilis GNS1m male)
ATGCTTGACGTTTTAGGATACAAACGCCAAAGCGATGGCTATAGTTGCGG
TTGCTACGTTATTCGATCTGCAACTGAGTTTGCTGCGGAAACAGGGTTTG
CACCGAAAACAGCCCGAAACACTGGAATGAGCCCACAGGCTTCTGAAGTC
TACCGATGGATGGTCATAAGGAGTCGTGGGCTGCAAATCCTTTTAGCGTC
TCAGTTCTACGGAAAAGACCTCGTCCACGAGTCAATGGTGGCAGAGTACC
GTTTGAACTGCCGATTGTATTATTTTAAGTGTCGAGAAGAGGGTAAAGGG
CGTCTAAAGAAGATGAGAAGTCCAATTTTAAGAAGTGGTGATCTCAGCAT
CGTTAGCCGAAAGCCTATTTTAAGCGTTATTAAGCAGGGATTGCCAACTA
GTACTAGAGGCTCCCAGCCGGCTACGCGCACTTCGAGATCGAGGACGGAC
AACGATGATGGTGGTAACGATGACGGTGGTAATGATGAGGGTATTGATCA
AGTAGAAGAGATGGCAACTATTGATACGGAGGAGGTCACTGACCTTGGCA
GTATTGGCAATACacaacagacgaaaacacaacaggaggtcaatacacaa
cagacaacaacacaacaGGCAAATTACATGACTACGACATTAACCTCGCG
TACTGCACGTTTGCGGGCAAGGGTGCAGCATCTGAACTCTAACCTCCCTC
CTCTTCCTGCCCGTTTATCAGAACGAAGGGTTAGGTTCTTTGACAGCATG
TCGGTGGCTGCCTGGATTGTTAACAGCGTGTTCCACgccgctgttggaga
cgttgcgaacggtgaaaaatctctgaaacacaagaatgtcgtcgtagttg
aaggtggggaattgggtggtagattgcttcaaagcaatgctgttgctacg
tggattgttaattacgtcatcaatgacgctgtagccaagcatcaattcaa
tattgcggcacgtgttgagagcgaggaagcacataagctgggtacctatg
aggaagagaactctatagcagttctaaaacaacaactgagtccggaaggt
gctcaactaactggtgatatttctgatttcgtgtccctcatggattctat
tgctcgtacgaagggctacctgtacactttacactacatgaggtatgttt
agtacccgaagaaaggctgtaaccgctttattaatgcacggttatggtgt
ttacgtcatagcaattatgccagtagttgcccttcgaacttgatcctgta
cctcaccgatattgacgctcaatggaaggtatGTCTAAACTTCAATCATT
CCCATGGccgcacccatcctactgagaaaactatcctaaacagacgagca
tctttaagggagtcaatgcgaaaacggtttcaaAAATGGAAGGATCAAGA
TCGCGAGAAGTCCGATAGGTTTTGGGAGCTACTTTATATGAAATGCTTCG
GTATGGATGGCGTAGCTTCAAGACTCGAAGAGGGATCTAATGGAGTATGT
GAAACTCGTCCTTTCCTTCCtttacaaaccttcaggcaagctggggcttc
tgccggtatctcccctcatgtacttttgcccttcagtgccacttcggcag
tagaacataactgtgtaccttGGATACCTCGCACGCTACTGCAAACACCG
CTTGCTAGCGAGAGGACATCTGTAGTTCCTTCATTTCTTGCTTCTAGCGT
CGATGCCCAACCAAGATCCAATTGTATTGGAGATGTAAATGGGTCAGGTC
ATGGCCCAGCGGGTGACGTCGGTGACGTcagaagtatgatccacaacgac
gtcacggacgtctcaggtgctttggtggatacctctatttttatgggttc
cagtgggaataatcggcaggaaagctcacacaagaaactggaattgcatt
tcagcccgttcgaactgcaatacattaattgtgctttatctcaaaacgag
cacggtgactatggaatgaacgttcatccatacgaagaacacgaaggagg
tgcggactgtgggggaggtacggattgtggAGGAGCTGCGGAgctaatag
agcaattcatgttcctcgatgatgatgaggaggtgccaactgaacttgtc
cgaattgaattggaccagagtcgcacggacagcactaccatggaaaacat
cggaagggacaaggacaatgacaattgtctgcctggagatatgggttgtg
atgcacaccttgtaactgaagagtacccagttgatgactacttcaaagcg
gcagtcattgcgtacttcaggagcttaccactgaatacccctgggcaaga
cgtcataagggaggttcgttttattggcgagagcatgggatacaatttga
agtgtaggacttccatctttattggccacaaagaagtgaatcggagtact
gggatggccgacgatagaagggtccttaagaaatgtatacttaagtgtaa
atggagagaagaaaaaagagcttgtgagttctctctaactattaaggcat
tgactccagagagagacgacgaagggaagtcatatgtgggggacttccgg
gatgcaagacattctcatccgccttcgtcaaccagagccggcatcaggtt
cttgccaccgaagatgcgtagagaagccctacgcatgggaaaccagttac
atttctcacttgcagataccattaggtatctgcaggaaaagtatgacatt
gtcataaacccgagatctgttcgtaaaatgattgggtatggacgtggaat
tagtaatccgaaggatcttgaatgtacaaagcttttcaaggagctcgtcg
cgttgcacgaagaagacgttcaaaatagatagtgcatcactcatgacgag
gaaggaagaatggtttccgcatgttgggcatttgcagaatggatagagga
ctacaaagcatttggaatcgtgcctggtgtgtctattgattgtaaggcgg
tcgcaaatcgttacgggttcccgctcataacaatcaatggccgttctaat
gacggcttttttctcacgttttttatgggctttataggtggtgaagcgga
ggagaacttcagggatgtgctaactcagttcaaatcatttatcccggtct
cgccagccattattacaatggatcagagtgcagcttgcatagctgcgaca
gagactgtgtttgaaaagtcgtgtattttacttgacgagtggcacttaaa
ccaaaatcaaatgaagaacgtcactgcctggtgcgccaaaattgcacgac
ttagttggtgcgatgaaatgtccagggaccttttcaacgttcgacgatcg
aagacactttctattttcgcagaacggcgccacgacttcgaagagagata
cttgaagccattcacgaacacgctccctgcttggtacacttatatctacg
tgaaccgaccgcagttgctcattcagtgcttttgcatcattgcggtccca
aggcaatactttttccaaggaacaggttacaccgaagcctcgaattcggg
ctacagggcttatgttctatccaaaaaggtgccgtttagtgatataccaa
gacaactgttgatgctgacgcgcaaacgggcagaagaatgcaaggaggca
cgaatacggttaatgtcacctttaagctcccgataccggtccattcgcag
tttgcatgctcccggttccaaatgagatcctcgacgagctcattgccgaa
tacacaagctattcattggcaaagttcagagagataagcattgaaccatc
gagaaactatgctgttcagcgtgcgtttgtttcggacctggaaggagtgc
aatggcctgagctacaactctcaaaaggctgtgctatccattctgtagca
tgctttgatctcacttggagcttccatcttattcgtaaacttgattcaag
caaccaacctactccagcaccaccgacacaacctctaagggttctgtttg
ctcggaaagtaagtgagagcgaagatggaggagagagcgaattaatcgca
cgatgtgattgcaagaaaacagaatcaatgggattcccttgtcatcacat
tgtaaagtgtgcgtttgcatacaacgattctgttctcactgaaccggatt
tgagaggaatcttggatgattatatagaaatcgagacattctttgaccca
tattggcgctcaagtattgacagcatttcattccaagaggtctgagacat
tcgcaatatgtgcggtttgtttgatatgacatctttgaagaagaaaatgg
ctacgtgttctagtgatttgcacgatgtagacatgggtcttcttctacat
aaaacaaccgaacaagaagtcaggaagcaagtgcagtggtcggataatta
cgccatcttcaatcaagtgcatcggttacttgaaggactaggtcctctcg
ccgttgagaacttttgtgagctcctgaaggaagcaaggaaacgactgagt
agaggagaaatagttacaaagacaattgttcaggagttcccgatgattgt
caataatgatcagaacaagaataatcatactcatatatcagatgaggaca
atcatgtagcactccctatactgcttcctccaaatccctcaagagTTAAG
ATAACGAAGAGGAAGAGGAGCTTCACAGAACAATTCAACAATAAGAAGAA
ATCGAAAATGGGCATGGCAAGCAAGAAGTCTACAACGTATGGTGGCTCAT
TTAGCGATACGGCGACAGCATCTCAAGAAGGTGTCGTCAATGCATGCCCA
CGCATAAGTACGGAACAAATCCATGCTGCTTAAAGGATGGCTATTGATAT
AATTGAAAGTGTTCACCGTTAGTATTGGGTTGGATAGATTTTGAACTGTA
TTATTGTTAGCTTACATATCTTTCGAGGTGAAgattgcgattaagcctct
gccgacgctagaaggacaaaaaagatgaacaagaccccaatatgatgaat
gaaagccatgatttctcaagccctcctctattaacgaaggcttggcgtgg
gaaagattaaatgAATGAATCTCGGTTGGCTTcttactttcagtgcttaa
ccggagtactatacgtagatgatgagttaaacgctacccaatCGCAAtga
tgaaaggagtttcgaagtttgaaatgaggatgttgatctgtttctgggag
aaggcaaacttcaccagtttcgcgtgagaggtagtataagtggtccgttg
cgagcagatgaggggatgtgaaagaagaagtctcaatcgctgttactatt
agaaaagaaacattcggatctctccttataatgcaactgaTAGCAGAATG
GACACAGTTCTCAGAATTATCgttatttagatctctccgtcatggtctgc
ggtcgacgtgcatcgcgttcagcagccttccttgatttgtcgtccattcc
cagcaactgtttcgtgtgcgtgttttctattttagttggtgccttgttca
tcctGCGATACGTCTCATTCATTTTGAGTGCGGCTATACTCTGTTACATT
GCAGTTCCTTCCAATTTCATGTCAAGCTTCTATCCTGAGTGGCATCCGCT
GGAGATCATAAGTCGCGGGGACTCAAATTGTTGTGCTAGAAACTTTGCCA
TGGGTACTGCATTAAGTCAAACTACTGCACACACTCGCCGTCTTCCAGCA
GTGCTCTCTTCTTGAGCACCTGAATTGCAAATGCCAGACAGTCCACTTCC
TTCTCCGCCTGTTTCTGCACACTTTAAATCACGCGTTACAGTTCGTCCAC
CTGCGCGCGCGGGCCCTCGTGCTTCATCTCCGTCAGGGCCAGCTCGCCTA
TTCGTGTTGAAAGAACGGCACCTTCCTGAGCCGCCTCAAATTTACAGGCC
ATCAGCAACCTGGCGTGCCTCTTCTTTTCCAAGTTGCCTTATACCGCTTC
AAGCCACGACAGCGTGCGCGCCGAGATGCAAGCAGACATGCGTCGCCGCG
CACCGGAGTGGTCAGTACAGAGCGCACACTACAGCGACGATGCTTCCTGC
CGCCAGTCAGGCGCGTGTGTCGTCCTTGAAGCGTGCGACGCCGTCAGAAA
AATGCTCTTTGAATGCAAGCTGCAAGCGCCGGACGCGAAGGCAAACCGGT
GGCTCTGATGCGCTATTCTTGTCTGCGGGGTTCCAGACGTGTCTGTTGGC
GTCAGGCTCTCGAAAAAAACTTGCGGCGGCAACTTATTGGACAACATCAA
TGCGGTGAAGCGGTTGGAGAGAATGATTGTGGACGCGCTGGATGATGGCC
TTTTCTTGCTCCCTGGTCCACGATGGGGAACATTGATGATGGTAGTGCTC
GTAGATGGTGGTCACGCAATTGCGAGAAGATACAGGCGTTACGGTTTGGG
TTTGAAAAGCGAGCCAGTTTTCAAgacacgcgcgccagttttcaagacac
aggggacgacttggggtgagtttactggtacggaaaatgatatgtctgag
cccatgggtgctatgggcctagagcctgagcgcgggggagccattggcag
ggagagaatgggcgcagaaggggccatggtgatgggtctcaatgtctgag
cccacacttctgattggttgttagtctgacgtcggcgacgtcgtgtcgat
tgggcacttgccCACTACCGCGCACCATCCCCCGCGACACAAACCAGCGT
TACTACCGCGCATACCCCTCGAACACTCCATGCTACGGTGACGTTCTACG
TTACAATTTTAGTCCATAGGCGCACTCCTCGTCACCACAACGGTGCAACC
GCTCCTTCGTGACATAGTATCAGTCACTATGTTACTCTCAATACACATAA
AACTCATATTTACATACGTCTCAAACCATTCTTAGTGACTCCATTGCTTG
CTTTTGCGAGCCAGTAAGCAAACTGTTAACATCCGTGCCACTATCATTCC
ATTTAAAGAATCTTGAACGTCATTATGCTCGTCTCCTGAAGCTTCTAAAC
AACCATTAATATGAAGTACCTCTTTTGCCCAAAGTGGAGCATGAGATCGA
TTCATACCCGTGTGTTTTACACCACCGATTCCTTCAATTGATTTTTGAAT
CTTAAAACGCATGTAAAAAGTCAGATATACATTCTCATCCCAACATCCAA
AAACAGATCAAAAGACGTACCTTAATTGAAACGAATGCCAGTTTAAATAC
ACTCAACGGAACAGAACGCGAAATGCTTTCAAGCAAATCCGGGATCGTTT
CACAACTTTAAAGAATGCTGTGCCCTTTCATGTTGTTAGCTGCAGATTTG
GCGATTGCTGATGCTTCGCTAATGCCCGTCGAAATTGCAGCAGTCCAAGC
GTCTTTGAATTCTGCATCTGACCTGAACTCGTTGGTCTCTAATACTTTTC
TCGAATACTCCTTCTTCAATGCCACGGTCGATCTGGACCTAGGATTCAGT
GGGCAGCTCAACGGTGTAGAGCTGCAGAACGAGTTAAACTAA

Coding sequence (CDS) from alignment at tig00000894_pilon:99361..106802+

>Ggra11032.t1 ID=Ggra11032.t1|Name=Ggra11032.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=753bp|location=Sequence derived from alignment at tig00000894_pilon:99361..106802+ (Gracilaria gracilis GNS1m male)
ATGCTTGACGTTTTAGGATACAAACGCCAAAGCGATGGCTATAGTTGCGG
TTGCTACGTTATTCGATCTGCAACTGAGTTTGCTGCGGAAACAGGGTTTG
CACCGAAAACAGCCCGAAACACTGGAATGAGCCCACAGGCTTCTGAAGTC
TACCGATGGATGGTCATAAGGAGTCGTGGGCTGCAAATCCTTTTAGCGTC
TCAGTTCTACGGAAAAGACCTCGTCCACGAGTCAATGGTGGCAGAGTACC
GTTTGAACTGCCGATTGTATTATTTTAAGTGTCGAGAAGAGGGTAAAGGG
CGTCTAAAGAAGATGAGAAGTCCAATTTTAAGAAGTGGTGATCTCAGCAT
CGTTAGCCGAAAGCCTATTTTAAGCGTTATTAAGCAGGGATTGCCAACTA
GTACTAGAGGCTCCCAGCCGGCTACGCGCACTTCGAGATCGAGGACGGAC
AACGATGATGGTGGTAACGATGACGGTGGTAATGATGAGGGTATTGATCA
AGTAGAAGAGATGGCAACTATTGATACGGAGGAGGTCACTGACCTTGGCA
CTGCAGATTTGGCGATTGCTGATGCTTCGCTAATGCCCGTCGAAATTGCA
GCAGTCCAAGCGTCTTTGAATTCTGCATCTGACCTGAACTCGTTGGTCTC
TAATACTTTTCTCGAATACTCCTTCTTCAATGCCACGGTCGATCTGGACC
TAGGATTCAGTGGGCAGCTCAACGGTGTAGAGCTGCAGAACGAGTTAAAC
TAA