Ggra11021.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11021.t1
Unique NameGgra11021.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length457
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000894_piloncontigtig00000894_pilon:19223..20680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42345.XP_008810254.1
PFAMsAmino_oxidase
Max annot lvl35493|Streptophyta
Evalue3.03e-107
EggNOG OGsCOG1233@1|root,2QSIC@2759|Eukaryota,37N2T@33090|Viridiplantae,3GBKK@35493|Streptophyta,3KNEA@4447|Liliopsida
DescriptionFlavin containing amine oxidoreductase
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11021Ggra11021Gracilaria gracilis GNS1m malegenetig00000894_pilon 19223..20680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11021.t1Ggra11021.t1Gracilaria gracilis GNS1m malepolypeptidetig00000894_pilon 19223..20680 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11021.t1.start1Ggra11021.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000894_pilon 19223..19225 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11021.t1.CDS1Ggra11021.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000894_pilon 19223..19539 +
Ggra11021.t1.CDS2Ggra11021.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000894_pilon 19627..20680 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11021.t1.exon1Ggra11021.t1.exon1Gracilaria gracilis GNS1m maleexontig00000894_pilon 19223..19539 +
Ggra11021.t1.exon2Ggra11021.t1.exon2Gracilaria gracilis GNS1m maleexontig00000894_pilon 19627..20680 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11021.t1.intron1Ggra11021.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000894_pilon 19540..19626 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11021.t1.stop1Ggra11021.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000894_pilon 20678..20680 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11021.t1 ID=Ggra11021.t1|Name=Ggra11021.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=457bp
MATRQLLFVGGWPLLRPGKARQSGGAISVPKCVSTETPRKPSAVVIGAGV
AGLSAARELAKAGLSVTILEASDDVGGRVRTDEVDGFLLDRGFQVFIEAY
PECRNVLRYDELELHRFLPGAMIRYKGAFHTISDPFRAPLLALGGVFTPI
GSLVDKVRVALLRFKLLSTSLSSIFRSSSQPLDLFLRGEGFSQQFIDTFF
RPFYQGIFLAPLSEQSSIMFSFVFRMFAEGAASLPAGGIGAISRQMADTL
PQGVELKLKSRVTSVSSCFVSTESEEYTPSVVVVATEGPEAARLLTGVEC
SMSRGSICLYFSSNKAAPLSKPLLVLNGEKDGVVNNMFFPAQVCANYAPA
GKTLISSTIVGDELGKSEQQVEQLVRQQLRGWFGQAVDEWQLLRMYRIPH
SQPAQGEDFVLEKELAVGEGVFVCGDHRNSPTLHGAMLSGRLAAQKAVAH
VRGQQS*
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spliced messenger RNA

>Ggra11021.t1 ID=Ggra11021.t1|Name=Ggra11021.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1371bp|location=Sequence derived from alignment at tig00000894_pilon:19223..20680+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACCAGGCAGCTTCTCTTTGTCGGTGGATGGCCACTTCTTCGGCC
AGGAAAAGCGCGTCAGTCAGGAGGCGCTATTTCGGTGCCGAAATGTGTAT
CGACGGAAACACCTCGAAAGCCCAGTGCTGTAGTGATTGGCGCTGGCGTA
GCTGGTCTGTCCGCGGCTCGCGAGCTCGCAAAGGCTGGACTAAGTGTAAC
AATCCTGGAAGCATCAGATGATGTCGGGGGTCGTGTTCGCACTGATGAGG
TGGACGGTTTCCTACTGGACCGCGGATTCCAAGTGTTCATTGAAGCGTAT
CCCGAATGTCGGAATGTACTGCGATATGACGAATTAGAGCTACATCGTTT
TCTACCAGGTGCAATGATAAGGTACAAGGGCGCATTTCACACAATTAGCG
ACCCATTTCGCGCACCGCTTCTCGCTTTGGGAGGCGTTTTCACACCGATA
GGCAGTCTGGTGGACAAAGTACGAGTGGCGTTGCTACGGTTTAAACTGCT
GTCCACTTCTTTGTCAAGCATATTCAGAAGCTCATCACAGCCACTCGATT
TGTTCCTTCGTGGTGAGGGCTTTTCGCAACAGTTCATCGACACATTTTTC
CGACCATTCTACCAGGGTATCTTTCTAGCGCCGCTTTCGGAACAATCTTC
CATCATGTTTTCTTTTGTGTTTAGGATGTTTGCCGAGGGTGCAGCGTCGT
TGCCAGCGGGTGGTATAGGAGCAATCTCACGACAAATGGCGGACACTCTT
CCACAAGGTGTGGAATTGAAGTTGAAAAGCAGAGTGACAAGCGTTAGTAG
TTGCTTTGTGAGCACAGAAAGCGAAGAGTACACGCCCAGCGTGGTGGTGG
TGGCGACGGAGGGCCCTGAAGCGGCGAGACTATTGACAGGAGTGGAATGC
AGTATGTCACGTGGAAGTATTTGTTTATACTTTTCGTCAAACAAGGCGGC
GCCTCTTTCTAAGCCACTGCTTGTGCTGAACGGCGAGAAGGACGGTGTGG
TGAACAACATGTTCTTCCCGGCACAGGTGTGCGCGAATTACGCGCCAGCA
GGAAAGACGCTGATATCCAGCACGATTGTGGGCGATGAATTGGGCAAAAG
TGAGCAGCAAGTGGAACAGCTGGTGAGACAGCAGCTGCGAGGCTGGTTCG
GCCAGGCCGTGGATGAGTGGCAGCTATTGCGCATGTACCGCATCCCGCAC
TCACAGCCAGCGCAGGGTGAGGACTTTGTGCTGGAGAAGGAGCTTGCGGT
GGGTGAGGGGGTGTTTGTCTGTGGCGATCATCGAAACTCACCCACTTTGC
ATGGGGCAATGCTCTCGGGACGGCTGGCGGCTCAGAAGGCCGTGGCGCAC
GTACGTGGGCAGCAAAGCTGA
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protein sequence of Ggra11021.t1

>Ggra11021.t1 ID=Ggra11021.t1|Name=Ggra11021.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=457bp
MATRQLLFVGGWPLLRPGKARQSGGAISVPKCVSTETPRKPSAVVIGAGV
AGLSAARELAKAGLSVTILEASDDVGGRVRTDEVDGFLLDRGFQVFIEAY
PECRNVLRYDELELHRFLPGAMIRYKGAFHTISDPFRAPLLALGGVFTPI
GSLVDKVRVALLRFKLLSTSLSSIFRSSSQPLDLFLRGEGFSQQFIDTFF
RPFYQGIFLAPLSEQSSIMFSFVFRMFAEGAASLPAGGIGAISRQMADTL
PQGVELKLKSRVTSVSSCFVSTESEEYTPSVVVVATEGPEAARLLTGVEC
SMSRGSICLYFSSNKAAPLSKPLLVLNGEKDGVVNNMFFPAQVCANYAPA
GKTLISSTIVGDELGKSEQQVEQLVRQQLRGWFGQAVDEWQLLRMYRIPH
SQPAQGEDFVLEKELAVGEGVFVCGDHRNSPTLHGAMLSGRLAAQKAVAH
VRGQQS*
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mRNA from alignment at tig00000894_pilon:19223..20680+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11021.t1 ID=Ggra11021.t1|Name=Ggra11021.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1458bp|location=Sequence derived from alignment at tig00000894_pilon:19223..20680+ (Gracilaria gracilis GNS1m male)
ATGGCTACCAGGCAGCTTCTCTTTGTCGGTGGATGGCCACTTCTTCGGCC
AGGAAAAGCGCGTCAGTCAGGAGGCGCTATTTCGGTGCCGAAATGTGTAT
CGACGGAAACACCTCGAAAGCCCAGTGCTGTAGTGATTGGCGCTGGCGTA
GCTGGTCTGTCCGCGGCTCGCGAGCTCGCAAAGGCTGGACTAAGTGTAAC
AATCCTGGAAGCATCAGATGATGTCGGGGGTCGTGTTCGCACTGATGAGG
TGGACGGTTTCCTACTGGACCGCGGATTCCAAGTGTTCATTGAAGCGTAT
CCCGAATGTCGGAATGTGTGAGTTGTTCAAAGCGTTACTATTTGGTACCC
GTGTTTTCAATACACTGACGATACAGAGAACTGTTTACAATGGGTTGCGG
ACAGACTGCGATATGACGAATTAGAGCTACATCGTTTTCTACCAGGTGCA
ATGATAAGGTACAAGGGCGCATTTCACACAATTAGCGACCCATTTCGCGC
ACCGCTTCTCGCTTTGGGAGGCGTTTTCACACCGATAGGCAGTCTGGTGG
ACAAAGTACGAGTGGCGTTGCTACGGTTTAAACTGCTGTCCACTTCTTTG
TCAAGCATATTCAGAAGCTCATCACAGCCACTCGATTTGTTCCTTCGTGG
TGAGGGCTTTTCGCAACAGTTCATCGACACATTTTTCCGACCATTCTACC
AGGGTATCTTTCTAGCGCCGCTTTCGGAACAATCTTCCATCATGTTTTCT
TTTGTGTTTAGGATGTTTGCCGAGGGTGCAGCGTCGTTGCCAGCGGGTGG
TATAGGAGCAATCTCACGACAAATGGCGGACACTCTTCCACAAGGTGTGG
AATTGAAGTTGAAAAGCAGAGTGACAAGCGTTAGTAGTTGCTTTGTGAGC
ACAGAAAGCGAAGAGTACACGCCCAGCGTGGTGGTGGTGGCGACGGAGGG
CCCTGAAGCGGCGAGACTATTGACAGGAGTGGAATGCAGTATGTCACGTG
GAAGTATTTGTTTATACTTTTCGTCAAACAAGGCGGCGCCTCTTTCTAAG
CCACTGCTTGTGCTGAACGGCGAGAAGGACGGTGTGGTGAACAACATGTT
CTTCCCGGCACAGGTGTGCGCGAATTACGCGCCAGCAGGAAAGACGCTGA
TATCCAGCACGATTGTGGGCGATGAATTGGGCAAAAGTGAGCAGCAAGTG
GAACAGCTGGTGAGACAGCAGCTGCGAGGCTGGTTCGGCCAGGCCGTGGA
TGAGTGGCAGCTATTGCGCATGTACCGCATCCCGCACTCACAGCCAGCGC
AGGGTGAGGACTTTGTGCTGGAGAAGGAGCTTGCGGTGGGTGAGGGGGTG
TTTGTCTGTGGCGATCATCGAAACTCACCCACTTTGCATGGGGCAATGCT
CTCGGGACGGCTGGCGGCTCAGAAGGCCGTGGCGCACGTACGTGGGCAGC
AAAGCTGA
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Coding sequence (CDS) from alignment at tig00000894_pilon:19223..20680+

>Ggra11021.t1 ID=Ggra11021.t1|Name=Ggra11021.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1371bp|location=Sequence derived from alignment at tig00000894_pilon:19223..20680+ (Gracilaria gracilis GNS1m male)
ATGGCTACCAGGCAGCTTCTCTTTGTCGGTGGATGGCCACTTCTTCGGCC
AGGAAAAGCGCGTCAGTCAGGAGGCGCTATTTCGGTGCCGAAATGTGTAT
CGACGGAAACACCTCGAAAGCCCAGTGCTGTAGTGATTGGCGCTGGCGTA
GCTGGTCTGTCCGCGGCTCGCGAGCTCGCAAAGGCTGGACTAAGTGTAAC
AATCCTGGAAGCATCAGATGATGTCGGGGGTCGTGTTCGCACTGATGAGG
TGGACGGTTTCCTACTGGACCGCGGATTCCAAGTGTTCATTGAAGCGTAT
CCCGAATGTCGGAATGTACTGCGATATGACGAATTAGAGCTACATCGTTT
TCTACCAGGTGCAATGATAAGGTACAAGGGCGCATTTCACACAATTAGCG
ACCCATTTCGCGCACCGCTTCTCGCTTTGGGAGGCGTTTTCACACCGATA
GGCAGTCTGGTGGACAAAGTACGAGTGGCGTTGCTACGGTTTAAACTGCT
GTCCACTTCTTTGTCAAGCATATTCAGAAGCTCATCACAGCCACTCGATT
TGTTCCTTCGTGGTGAGGGCTTTTCGCAACAGTTCATCGACACATTTTTC
CGACCATTCTACCAGGGTATCTTTCTAGCGCCGCTTTCGGAACAATCTTC
CATCATGTTTTCTTTTGTGTTTAGGATGTTTGCCGAGGGTGCAGCGTCGT
TGCCAGCGGGTGGTATAGGAGCAATCTCACGACAAATGGCGGACACTCTT
CCACAAGGTGTGGAATTGAAGTTGAAAAGCAGAGTGACAAGCGTTAGTAG
TTGCTTTGTGAGCACAGAAAGCGAAGAGTACACGCCCAGCGTGGTGGTGG
TGGCGACGGAGGGCCCTGAAGCGGCGAGACTATTGACAGGAGTGGAATGC
AGTATGTCACGTGGAAGTATTTGTTTATACTTTTCGTCAAACAAGGCGGC
GCCTCTTTCTAAGCCACTGCTTGTGCTGAACGGCGAGAAGGACGGTGTGG
TGAACAACATGTTCTTCCCGGCACAGGTGTGCGCGAATTACGCGCCAGCA
GGAAAGACGCTGATATCCAGCACGATTGTGGGCGATGAATTGGGCAAAAG
TGAGCAGCAAGTGGAACAGCTGGTGAGACAGCAGCTGCGAGGCTGGTTCG
GCCAGGCCGTGGATGAGTGGCAGCTATTGCGCATGTACCGCATCCCGCAC
TCACAGCCAGCGCAGGGTGAGGACTTTGTGCTGGAGAAGGAGCTTGCGGT
GGGTGAGGGGGTGTTTGTCTGTGGCGATCATCGAAACTCACCCACTTTGC
ATGGGGCAATGCTCTCGGGACGGCTGGCGGCTCAGAAGGCCGTGGCGCAC
GTACGTGGGCAGCAAAGCTGA
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