Ggra11037.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11037.t1
Unique NameGgra11037.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length236
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000894_piloncontigtig00000894_pilon:174759..175466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3827.XP_004513277.1
PFAMsSnoaL_3,UVR
Max annot lvl35493|Streptophyta
Evalue7.18e-16
EggNOG OGs2CMBB@1|root,2QPVH@2759|Eukaryota,37PWJ@33090|Viridiplantae,3G71A@35493|Streptophyta,4JJGB@91835|fabids
DescriptionDomain of unknown function (DUF4440)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11037Ggra11037Gracilaria gracilis GNS1m malegenetig00000894_pilon 174759..175466 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11037.t1.start1Ggra11037.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000894_pilon 174759..174761 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11037.t1.CDS1Ggra11037.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000894_pilon 174759..175466 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11037.t1.exon1Ggra11037.t1.exon1Gracilaria gracilis GNS1m maleexontig00000894_pilon 174759..175466 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11037.t1.stop1Ggra11037.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000894_pilon 175464..175466 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11037.t1Ggra11037.t1Gracilaria gracilis GNS1m malepolypeptidetig00000894_pilon 174759..175466 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11037.t1 ID=Ggra11037.t1|Name=Ggra11037.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=236bp
MHSPAFLSPFLPRAPQCNSKTAVLLTHRPGSTPTRARATVRSDLSQELPS
DSKSNPFRITELQDQLDDALAAEQYICAASLRDQLRRAENEDYIQVLQTL
LQYYDAFNSHSLQRLARMWHPRDDVTCQHPLTQVHRGYDAVLHSFESLFH
TLPPDLNIQVSDVRMQAFGQVAMVTCLEIPHSSVLDGMDKGIIQQHGLLS
TSIFEKQRVGQTDNFEYLMVHHASAPIIQGTHASS*
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spliced messenger RNA

>Ggra11037.t1 ID=Ggra11037.t1|Name=Ggra11037.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=708bp|location=Sequence derived from alignment at tig00000894_pilon:174759..175466+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTCTCCTGCTTTTCTCTCTCCCTTCCTACCGCGAGCTCCTCAATG
CAATTCAAAAACCGCTGTCCTGCTCACGCATCGGCCTGGCAGCACTCCCA
CCCGCGCCCGCGCTACAGTTCGAAGTGACCTCAGTCAAGAGCTTCCATCA
GATTCAAAGTCTAATCCATTTCGCATAACCGAACTGCAGGATCAGTTGGA
TGATGCGCTTGCTGCCGAACAATACATATGCGCAGCAAGCTTGCGAGACC
AACTACGAAGAGCGGAGAATGAAGACTATATTCAAGTGCTACAAACCTTG
CTCCAGTACTACGACGCGTTTAACAGTCATTCTCTGCAGCGCCTTGCTCG
TATGTGGCACCCTCGTGATGACGTTACCTGTCAACATCCGCTCACGCAAG
TGCATCGAGGATACGACGCAGTACTACATAGCTTCGAATCATTGTTCCAC
ACATTACCGCCAGATTTGAACATCCAGGTTTCGGACGTACGAATGCAAGC
ATTTGGTCAAGTCGCAATGGTCACTTGTCTGGAGATTCCGCACAGCAGCG
TCCTGGACGGCATGGACAAAGGAATCATTCAACAACACGGCCTTTTAAGT
ACTTCCATCTTTGAAAAGCAAAGAGTTGGCCAAACTGACAACTTCGAGTA
CCTTATGGTGCACCATGCCAGCGCTCCAATCATTCAAGGTACTCATGCGA
GCAGTTAG
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protein sequence of Ggra11037.t1

>Ggra11037.t1 ID=Ggra11037.t1|Name=Ggra11037.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=236bp
MHSPAFLSPFLPRAPQCNSKTAVLLTHRPGSTPTRARATVRSDLSQELPS
DSKSNPFRITELQDQLDDALAAEQYICAASLRDQLRRAENEDYIQVLQTL
LQYYDAFNSHSLQRLARMWHPRDDVTCQHPLTQVHRGYDAVLHSFESLFH
TLPPDLNIQVSDVRMQAFGQVAMVTCLEIPHSSVLDGMDKGIIQQHGLLS
TSIFEKQRVGQTDNFEYLMVHHASAPIIQGTHASS*
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mRNA from alignment at tig00000894_pilon:174759..175466+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11037.t1 ID=Ggra11037.t1|Name=Ggra11037.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=708bp|location=Sequence derived from alignment at tig00000894_pilon:174759..175466+ (Gracilaria gracilis GNS1m male)
ATGCATTCTCCTGCTTTTCTCTCTCCCTTCCTACCGCGAGCTCCTCAATG
CAATTCAAAAACCGCTGTCCTGCTCACGCATCGGCCTGGCAGCACTCCCA
CCCGCGCCCGCGCTACAGTTCGAAGTGACCTCAGTCAAGAGCTTCCATCA
GATTCAAAGTCTAATCCATTTCGCATAACCGAACTGCAGGATCAGTTGGA
TGATGCGCTTGCTGCCGAACAATACATATGCGCAGCAAGCTTGCGAGACC
AACTACGAAGAGCGGAGAATGAAGACTATATTCAAGTGCTACAAACCTTG
CTCCAGTACTACGACGCGTTTAACAGTCATTCTCTGCAGCGCCTTGCTCG
TATGTGGCACCCTCGTGATGACGTTACCTGTCAACATCCGCTCACGCAAG
TGCATCGAGGATACGACGCAGTACTACATAGCTTCGAATCATTGTTCCAC
ACATTACCGCCAGATTTGAACATCCAGGTTTCGGACGTACGAATGCAAGC
ATTTGGTCAAGTCGCAATGGTCACTTGTCTGGAGATTCCGCACAGCAGCG
TCCTGGACGGCATGGACAAAGGAATCATTCAACAACACGGCCTTTTAAGT
ACTTCCATCTTTGAAAAGCAAAGAGTTGGCCAAACTGACAACTTCGAGTA
CCTTATGGTGCACCATGCCAGCGCTCCAATCATTCAAGGTACTCATGCGA
GCAGTTAG
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Coding sequence (CDS) from alignment at tig00000894_pilon:174759..175466+

>Ggra11037.t1 ID=Ggra11037.t1|Name=Ggra11037.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=708bp|location=Sequence derived from alignment at tig00000894_pilon:174759..175466+ (Gracilaria gracilis GNS1m male)
ATGCATTCTCCTGCTTTTCTCTCTCCCTTCCTACCGCGAGCTCCTCAATG
CAATTCAAAAACCGCTGTCCTGCTCACGCATCGGCCTGGCAGCACTCCCA
CCCGCGCCCGCGCTACAGTTCGAAGTGACCTCAGTCAAGAGCTTCCATCA
GATTCAAAGTCTAATCCATTTCGCATAACCGAACTGCAGGATCAGTTGGA
TGATGCGCTTGCTGCCGAACAATACATATGCGCAGCAAGCTTGCGAGACC
AACTACGAAGAGCGGAGAATGAAGACTATATTCAAGTGCTACAAACCTTG
CTCCAGTACTACGACGCGTTTAACAGTCATTCTCTGCAGCGCCTTGCTCG
TATGTGGCACCCTCGTGATGACGTTACCTGTCAACATCCGCTCACGCAAG
TGCATCGAGGATACGACGCAGTACTACATAGCTTCGAATCATTGTTCCAC
ACATTACCGCCAGATTTGAACATCCAGGTTTCGGACGTACGAATGCAAGC
ATTTGGTCAAGTCGCAATGGTCACTTGTCTGGAGATTCCGCACAGCAGCG
TCCTGGACGGCATGGACAAAGGAATCATTCAACAACACGGCCTTTTAAGT
ACTTCCATCTTTGAAAAGCAAAGAGTTGGCCAAACTGACAACTTCGAGTA
CCTTATGGTGCACCATGCCAGCGCTCCAATCATTCAAGGTACTCATGCGA
GCAGTTAG
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