Ggra11033.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11033.t1
Unique NameGgra11033.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length234
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000894_piloncontigtig00000894_pilon:107588..108289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11033Ggra11033Gracilaria gracilis GNS1m malegenetig00000894_pilon 107588..108289 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11033.t1.start1Ggra11033.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000894_pilon 107588..107590 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11033.t1.CDS1Ggra11033.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000894_pilon 107588..108289 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11033.t1.exon1Ggra11033.t1.exon1Gracilaria gracilis GNS1m maleexontig00000894_pilon 107588..108289 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11033.t1.stop1Ggra11033.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000894_pilon 108287..108289 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11033.t1Ggra11033.t1Gracilaria gracilis GNS1m malepolypeptidetig00000894_pilon 107588..108289 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11033.t1 ID=Ggra11033.t1|Name=Ggra11033.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=234bp
MSSSKPISKTDLFHKYHFGHFDSEDARNQFKKFLERKTNTAVPPMLEVLI
ESYHTFLHSIESNQHQRNGNQRHQSIAFGSKKKDGEEDWYYEANECDMAA
GGFFENKGCFSSVVHDMLRLLSCISIKKKRFVARSLTKHHSRRLEKWRTN
IDTFFDDLDKLKNVYYGRCKKRKRGRRGGRREAKKRVAMERREAKREQME
RANGTGGDLDDSSDGESDTDSLEFDGNDREGTL*
back to top

spliced messenger RNA

>Ggra11033.t1 ID=Ggra11033.t1|Name=Ggra11033.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00000894_pilon:107588..108289+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTCCTCGAAGCCGATAAGCAAGACCGATCTTTTCCACAAGTATCA
CTTTGGACATTTTGACAGCGAGGATGCACGAAACCAGTTTAAAAAATTTC
TTGAGCGGAAAACAAACACCGCAGTACCCCCAATGCTAGAGGTACTCATT
GAAAGCTATCACACTTTTCTACATAGCATTGAATCAAACCAACACCAACG
AAATGGGAATCAGAGGCATCAAAGTATTGCTTTTGGATCCAAGAAAAAAG
ATGGTGAAGAAGACTGGTACTACGAAGCAAATGAATGTGACATGGCAGCT
GGAGGATTCTTTGAAAACAAAGGTTGCTTTTCTTCTGTTGTTCACGACAT
GCTACGCTTATTATCTTGCATTTCGATCAAGAAGAAGCGTTTTGTCGCCC
GCTCGTTAACGAAACATCATTCGAGACGTCTCGAGAAGTGGCGCACGAAT
ATCGACACATTTTTCGACGACTTGGATAAACTCAAGAACGTATACTACGG
ACGGTGCAAGAAGCGTAAGCGAGGTAGACGGGGAGGACGACGTGAGGCTA
AAAAGAGAGTTGCAATGGAAAGAAGGGAGGCTAAGAGAGAACAGATGGAG
AGAGCGAATGGCACTGGTGGAGACTTAGATGACTCTTCGGACGGCGAGAG
TGACACTGATTCATTGGAATTCGATGGTAACGATAGAGAAGGCACTCTGT
AA
back to top

protein sequence of Ggra11033.t1

>Ggra11033.t1 ID=Ggra11033.t1|Name=Ggra11033.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=234bp
MSSSKPISKTDLFHKYHFGHFDSEDARNQFKKFLERKTNTAVPPMLEVLI
ESYHTFLHSIESNQHQRNGNQRHQSIAFGSKKKDGEEDWYYEANECDMAA
GGFFENKGCFSSVVHDMLRLLSCISIKKKRFVARSLTKHHSRRLEKWRTN
IDTFFDDLDKLKNVYYGRCKKRKRGRRGGRREAKKRVAMERREAKREQME
RANGTGGDLDDSSDGESDTDSLEFDGNDREGTL*
back to top

mRNA from alignment at tig00000894_pilon:107588..108289+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11033.t1 ID=Ggra11033.t1|Name=Ggra11033.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00000894_pilon:107588..108289+ (Gracilaria gracilis GNS1m male)
ATGTCCTCCTCGAAGCCGATAAGCAAGACCGATCTTTTCCACAAGTATCA
CTTTGGACATTTTGACAGCGAGGATGCACGAAACCAGTTTAAAAAATTTC
TTGAGCGGAAAACAAACACCGCAGTACCCCCAATGCTAGAGGTACTCATT
GAAAGCTATCACACTTTTCTACATAGCATTGAATCAAACCAACACCAACG
AAATGGGAATCAGAGGCATCAAAGTATTGCTTTTGGATCCAAGAAAAAAG
ATGGTGAAGAAGACTGGTACTACGAAGCAAATGAATGTGACATGGCAGCT
GGAGGATTCTTTGAAAACAAAGGTTGCTTTTCTTCTGTTGTTCACGACAT
GCTACGCTTATTATCTTGCATTTCGATCAAGAAGAAGCGTTTTGTCGCCC
GCTCGTTAACGAAACATCATTCGAGACGTCTCGAGAAGTGGCGCACGAAT
ATCGACACATTTTTCGACGACTTGGATAAACTCAAGAACGTATACTACGG
ACGGTGCAAGAAGCGTAAGCGAGGTAGACGGGGAGGACGACGTGAGGCTA
AAAAGAGAGTTGCAATGGAAAGAAGGGAGGCTAAGAGAGAACAGATGGAG
AGAGCGAATGGCACTGGTGGAGACTTAGATGACTCTTCGGACGGCGAGAG
TGACACTGATTCATTGGAATTCGATGGTAACGATAGAGAAGGCACTCTGT
AA
back to top

Coding sequence (CDS) from alignment at tig00000894_pilon:107588..108289+

>Ggra11033.t1 ID=Ggra11033.t1|Name=Ggra11033.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=702bp|location=Sequence derived from alignment at tig00000894_pilon:107588..108289+ (Gracilaria gracilis GNS1m male)
ATGTCCTCCTCGAAGCCGATAAGCAAGACCGATCTTTTCCACAAGTATCA
CTTTGGACATTTTGACAGCGAGGATGCACGAAACCAGTTTAAAAAATTTC
TTGAGCGGAAAACAAACACCGCAGTACCCCCAATGCTAGAGGTACTCATT
GAAAGCTATCACACTTTTCTACATAGCATTGAATCAAACCAACACCAACG
AAATGGGAATCAGAGGCATCAAAGTATTGCTTTTGGATCCAAGAAAAAAG
ATGGTGAAGAAGACTGGTACTACGAAGCAAATGAATGTGACATGGCAGCT
GGAGGATTCTTTGAAAACAAAGGTTGCTTTTCTTCTGTTGTTCACGACAT
GCTACGCTTATTATCTTGCATTTCGATCAAGAAGAAGCGTTTTGTCGCCC
GCTCGTTAACGAAACATCATTCGAGACGTCTCGAGAAGTGGCGCACGAAT
ATCGACACATTTTTCGACGACTTGGATAAACTCAAGAACGTATACTACGG
ACGGTGCAAGAAGCGTAAGCGAGGTAGACGGGGAGGACGACGTGAGGCTA
AAAAGAGAGTTGCAATGGAAAGAAGGGAGGCTAAGAGAGAACAGATGGAG
AGAGCGAATGGCACTGGTGGAGACTTAGATGACTCTTCGGACGGCGAGAG
TGACACTGATTCATTGGAATTCGATGGTAACGATAGAGAAGGCACTCTGT
AA
back to top