Ggra11036.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11036.t1
Unique NameGgra11036.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length417
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000894_piloncontigtig00000894_pilon:171952..173472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11036Ggra11036Gracilaria gracilis GNS1m malegenetig00000894_pilon 171952..173472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11036.t1Ggra11036.t1Gracilaria gracilis GNS1m malepolypeptidetig00000894_pilon 171952..173472 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11036.t1.stop1Ggra11036.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000894_pilon 171952..171954 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11036.t1.CDS1Ggra11036.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000894_pilon 171952..173038 -
Ggra11036.t1.CDS2Ggra11036.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000894_pilon 173149..173156 -
Ggra11036.t1.CDS3Ggra11036.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000894_pilon 173206..173309 -
Ggra11036.t1.CDS4Ggra11036.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000894_pilon 173421..173472 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11036.t1.exon1Ggra11036.t1.exon1Gracilaria gracilis GNS1m maleexontig00000894_pilon 171952..173038 -
Ggra11036.t1.exon2Ggra11036.t1.exon2Gracilaria gracilis GNS1m maleexontig00000894_pilon 173149..173156 -
Ggra11036.t1.exon3Ggra11036.t1.exon3Gracilaria gracilis GNS1m maleexontig00000894_pilon 173206..173309 -
Ggra11036.t1.exon4Ggra11036.t1.exon4Gracilaria gracilis GNS1m maleexontig00000894_pilon 173421..173472 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11036.t1.intron1Ggra11036.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000894_pilon 173039..173148 -
Ggra11036.t1.intron2Ggra11036.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000894_pilon 173157..173205 -
Ggra11036.t1.intron3Ggra11036.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000894_pilon 173310..173420 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11036.t1.start1Ggra11036.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000894_pilon 173470..173472 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11036.t1 ID=Ggra11036.t1|Name=Ggra11036.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=417bp
MTNVHKDPRVRPVSAAEGRGYARNPHMFIDVLRIPSITEAVEEASRLLRV
GIQRKREPPPKPVDPERPNTVVKGWNSAKKAGPSILSKRAASNSSSVFQP
APKREKKNEIPQNEKTNTEKSDGEPSSKVETGNESERQTKVHQMPCEQDT
AKLTKAQEERRAQPEVSKVVMVNGTERNQSKRKTAPSTKGSSSVQVGKAT
SVGEAHTQKSASEIWAKAVNASAEERALKHKNTLTVGARRSGLPASWGQV
SSSRGASKQPSVLSLLRKQGGLGQAKMQIPRSGANAISPVTQSVIRPPTA
TFNQSTMIPMPRATGLEILFVPGSEVIGGVRPNGYTVSRQGVVKPLITFN
PKPKVPHKVRQTSLEKLFEAWRDNKGLKEGEALAKALRTEQEMYAAANSR
VEYRAAVTVKLKEIRK*
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spliced messenger RNA

>Ggra11036.t1 ID=Ggra11036.t1|Name=Ggra11036.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1251bp|location=Sequence derived from alignment at tig00000894_pilon:171952..173472- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCAACGTACATAAAGATCCTCGTGTTCGCCCTGTCTCCGCTGCGGA
AGGACGAGGCTACGCCAGGAACCCACACATGTTCATTGACGTCTTGCGAA
TTCCATCCATAACAGAAGCCGTCGAAGAGGCTTCGCGTCTTTTGCGCGTG
GGCATACAAAGGAAAAGAGAACCGCCGCCTAAACCAGTGGATCCGGAGCG
CCCGAACACCGTCGTCAAGGGATGGAACAGCGCAAAGAAGGCCGGTCCCA
GCATCCTTTCCAAACGCGCCGCATCCAATTCGAGTTCAGTCTTCCAGCCA
GCTCCTAAACGAGAGAAAAAGAACGAAATACCGCAAAACGAGAAGACGAA
CACGGAGAAGTCCGATGGTGAGCCATCATCCAAAGTTGAGACAGGAAATG
AATCTGAGAGGCAAACAAAGGTGCACCAAATGCCATGTGAACAAGACACA
GCGAAACTAACAAAAGCCCAAGAAGAAAGACGTGCGCAACCTGAGGTTAG
CAAAGTCGTAATGGTAAATGGAACCGAACGTAATCAATCAAAGCGAAAGA
CCGCACCATCCACTAAAGGTTCCAGCTCAGTTCAAGTCGGCAAGGCAACA
AGTGTTGGTGAAGCGCACACCCAGAAGTCTGCGAGTGAGATTTGGGCGAA
AGCGGTGAATGCATCTGCTGAAGAAAGAGCATTGAAGCATAAGAACACCC
TAACGGTCGGAGCTAGAAGAAGTGGATTGCCAGCGTCATGGGGTCAGGTG
AGTAGCAGTCGAGGAGCTTCTAAACAACCTTCCGTGCTTTCGCTGCTGAG
AAAGCAAGGGGGTTTAGGGCAAGCGAAAATGCAAATACCACGAAGTGGAG
CAAACGCAATCTCACCAGTGACTCAAAGCGTAATACGGCCTCCAACTGCA
ACTTTCAACCAAAGCACAATGATACCGATGCCAAGAGCAACTGGGCTAGA
AATACTCTTCGTGCCTGGGAGTGAAGTAATTGGAGGCGTTCGACCAAATG
GGTACACTGTTTCAAGGCAGGGTGTGGTTAAGCCCTTGATTACCTTCAAT
CCTAAGCCGAAAGTACCACACAAAGTTCGGCAAACTTCTCTCGAGAAACT
TTTTGAAGCATGGAGAGACAATAAGGGTCTAAAAGAAGGAGAAGCCCTGG
CAAAAGCTCTCAGAACGGAACAAGAAATGTATGCTGCTGCAAATAGCCGC
GTGGAATACAGAGCAGCTGTGACGGTGAAGCTAAAAGAAATACGGAAGTA
G
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protein sequence of Ggra11036.t1

>Ggra11036.t1 ID=Ggra11036.t1|Name=Ggra11036.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=417bp
MTNVHKDPRVRPVSAAEGRGYARNPHMFIDVLRIPSITEAVEEASRLLRV
GIQRKREPPPKPVDPERPNTVVKGWNSAKKAGPSILSKRAASNSSSVFQP
APKREKKNEIPQNEKTNTEKSDGEPSSKVETGNESERQTKVHQMPCEQDT
AKLTKAQEERRAQPEVSKVVMVNGTERNQSKRKTAPSTKGSSSVQVGKAT
SVGEAHTQKSASEIWAKAVNASAEERALKHKNTLTVGARRSGLPASWGQV
SSSRGASKQPSVLSLLRKQGGLGQAKMQIPRSGANAISPVTQSVIRPPTA
TFNQSTMIPMPRATGLEILFVPGSEVIGGVRPNGYTVSRQGVVKPLITFN
PKPKVPHKVRQTSLEKLFEAWRDNKGLKEGEALAKALRTEQEMYAAANSR
VEYRAAVTVKLKEIRK*
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mRNA from alignment at tig00000894_pilon:171952..173472-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11036.t1 ID=Ggra11036.t1|Name=Ggra11036.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1521bp|location=Sequence derived from alignment at tig00000894_pilon:171952..173472- (Gracilaria gracilis GNS1m male)
ATGACCAACGTACATAAAGATCCTCGTGTTCGCCCTGTCTCCGCTGCGGA
AGGTTAGTTCCTTCATCTCTCATTCTAAACAATCCGAGTCATTAGATTCG
CCTCTAATACAATACGCTAACCTGATCTCATCACGCCGCTGCTGTGATTC
TGCCTCACCAAAGGACGAGGCTACGCCAGGAACCCACACATGTTCATTGA
CGTCTTGCGAATTCCATCCATAACAGAAGCCGTCGAAGAGGCTTCGCGTC
TTTTGCGCGTGGGCATAGTGCGTGCAATGCAATCGAATCCCAACGCCGAA
TCTGACGTGGAGCCAGCAAAGGAAGTAAGGAACAATAAAACCTCGCTGCA
GACCGTGTCAACGCGACGCGATCCCGTTTCTGTGTACTCTGCGGTCACAA
AGCGTGTAAGCAAAACCACTGACGATGCAGCTAGAAGAGAACCGCCGCCT
AAACCAGTGGATCCGGAGCGCCCGAACACCGTCGTCAAGGGATGGAACAG
CGCAAAGAAGGCCGGTCCCAGCATCCTTTCCAAACGCGCCGCATCCAATT
CGAGTTCAGTCTTCCAGCCAGCTCCTAAACGAGAGAAAAAGAACGAAATA
CCGCAAAACGAGAAGACGAACACGGAGAAGTCCGATGGTGAGCCATCATC
CAAAGTTGAGACAGGAAATGAATCTGAGAGGCAAACAAAGGTGCACCAAA
TGCCATGTGAACAAGACACAGCGAAACTAACAAAAGCCCAAGAAGAAAGA
CGTGCGCAACCTGAGGTTAGCAAAGTCGTAATGGTAAATGGAACCGAACG
TAATCAATCAAAGCGAAAGACCGCACCATCCACTAAAGGTTCCAGCTCAG
TTCAAGTCGGCAAGGCAACAAGTGTTGGTGAAGCGCACACCCAGAAGTCT
GCGAGTGAGATTTGGGCGAAAGCGGTGAATGCATCTGCTGAAGAAAGAGC
ATTGAAGCATAAGAACACCCTAACGGTCGGAGCTAGAAGAAGTGGATTGC
CAGCGTCATGGGGTCAGGTGAGTAGCAGTCGAGGAGCTTCTAAACAACCT
TCCGTGCTTTCGCTGCTGAGAAAGCAAGGGGGTTTAGGGCAAGCGAAAAT
GCAAATACCACGAAGTGGAGCAAACGCAATCTCACCAGTGACTCAAAGCG
TAATACGGCCTCCAACTGCAACTTTCAACCAAAGCACAATGATACCGATG
CCAAGAGCAACTGGGCTAGAAATACTCTTCGTGCCTGGGAGTGAAGTAAT
TGGAGGCGTTCGACCAAATGGGTACACTGTTTCAAGGCAGGGTGTGGTTA
AGCCCTTGATTACCTTCAATCCTAAGCCGAAAGTACCACACAAAGTTCGG
CAAACTTCTCTCGAGAAACTTTTTGAAGCATGGAGAGACAATAAGGGTCT
AAAAGAAGGAGAAGCCCTGGCAAAAGCTCTCAGAACGGAACAAGAAATGT
ATGCTGCTGCAAATAGCCGCGTGGAATACAGAGCAGCTGTGACGGTGAAG
CTAAAAGAAATACGGAAGTAG
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Coding sequence (CDS) from alignment at tig00000894_pilon:171952..173472-

>Ggra11036.t1 ID=Ggra11036.t1|Name=Ggra11036.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1251bp|location=Sequence derived from alignment at tig00000894_pilon:171952..173472- (Gracilaria gracilis GNS1m male)
ATGACCAACGTACATAAAGATCCTCGTGTTCGCCCTGTCTCCGCTGCGGA
AGGACGAGGCTACGCCAGGAACCCACACATGTTCATTGACGTCTTGCGAA
TTCCATCCATAACAGAAGCCGTCGAAGAGGCTTCGCGTCTTTTGCGCGTG
GGCATACAAAGGAAAAGAGAACCGCCGCCTAAACCAGTGGATCCGGAGCG
CCCGAACACCGTCGTCAAGGGATGGAACAGCGCAAAGAAGGCCGGTCCCA
GCATCCTTTCCAAACGCGCCGCATCCAATTCGAGTTCAGTCTTCCAGCCA
GCTCCTAAACGAGAGAAAAAGAACGAAATACCGCAAAACGAGAAGACGAA
CACGGAGAAGTCCGATGGTGAGCCATCATCCAAAGTTGAGACAGGAAATG
AATCTGAGAGGCAAACAAAGGTGCACCAAATGCCATGTGAACAAGACACA
GCGAAACTAACAAAAGCCCAAGAAGAAAGACGTGCGCAACCTGAGGTTAG
CAAAGTCGTAATGGTAAATGGAACCGAACGTAATCAATCAAAGCGAAAGA
CCGCACCATCCACTAAAGGTTCCAGCTCAGTTCAAGTCGGCAAGGCAACA
AGTGTTGGTGAAGCGCACACCCAGAAGTCTGCGAGTGAGATTTGGGCGAA
AGCGGTGAATGCATCTGCTGAAGAAAGAGCATTGAAGCATAAGAACACCC
TAACGGTCGGAGCTAGAAGAAGTGGATTGCCAGCGTCATGGGGTCAGGTG
AGTAGCAGTCGAGGAGCTTCTAAACAACCTTCCGTGCTTTCGCTGCTGAG
AAAGCAAGGGGGTTTAGGGCAAGCGAAAATGCAAATACCACGAAGTGGAG
CAAACGCAATCTCACCAGTGACTCAAAGCGTAATACGGCCTCCAACTGCA
ACTTTCAACCAAAGCACAATGATACCGATGCCAAGAGCAACTGGGCTAGA
AATACTCTTCGTGCCTGGGAGTGAAGTAATTGGAGGCGTTCGACCAAATG
GGTACACTGTTTCAAGGCAGGGTGTGGTTAAGCCCTTGATTACCTTCAAT
CCTAAGCCGAAAGTACCACACAAAGTTCGGCAAACTTCTCTCGAGAAACT
TTTTGAAGCATGGAGAGACAATAAGGGTCTAAAAGAAGGAGAAGCCCTGG
CAAAAGCTCTCAGAACGGAACAAGAAATGTATGCTGCTGCAAATAGCCGC
GTGGAATACAGAGCAGCTGTGACGGTGAAGCTAAAAGAAATACGGAAGTA
G
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