Ggra92.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra92.t1
Unique NameGgra92.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length179
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000890_piloncontigtig00000890_pilon:23387..24007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra92Ggra92Gracilaria gracilis GNS1m malegenetig00000890_pilon 23387..24007 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra92.t1Ggra92.t1Gracilaria gracilis GNS1m malepolypeptidetig00000890_pilon 23387..24007 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra92.t1.stop1Ggra92.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000890_pilon 23387..23389 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra92.t1.CDS1Ggra92.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000890_pilon 23387..23841 -
Ggra92.t1.CDS2Ggra92.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000890_pilon 23926..24007 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra92.t1.exon1Ggra92.t1.exon1Gracilaria gracilis GNS1m maleexontig00000890_pilon 23387..23841 -
Ggra92.t1.exon2Ggra92.t1.exon2Gracilaria gracilis GNS1m maleexontig00000890_pilon 23926..24007 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra92.t1.intron1Ggra92.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000890_pilon 23842..23925 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra92.t1.start1Ggra92.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000890_pilon 24005..24007 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra92.t1 ID=Ggra92.t1|Name=Ggra92.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=179bp
MAQQLPQVISELSTLANDLIVNLFGILAVQQALQLIPSLSLRNGPSLLLR
VIEDSRSANIGWTGFNARHIIIVVGDTPGREPACATDDFQKALDRNTLFD
FVNILPTKFSFIAAIVGQPGLDSGLAQLPQCPFQPLCLLVFCERPEPAAG
VPVAPGKLSTLTSQVNGTFIADFSQAAV*
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spliced messenger RNA

>Ggra92.t1 ID=Ggra92.t1|Name=Ggra92.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=537bp|location=Sequence derived from alignment at tig00000890_pilon:23387..24007- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCAACAGCTGCCACAAGTGATCTCTGAGCTGTCTACGTTAGCGAA
CGATTTAATAGTCAACCTTTTTGGAATCTTGGCCGTGCAGCAAGCTCTCC
AGCTCATACCTTCCTTGTCACTTCGAAACGGTCCTAGTCTGTTGCTTCGC
GTCATTGAAGATTCGCGTAGTGCCAACATCGGATGGACCGGTTTCAATGC
GAGACACATCATCATCGTTGTTGGAGATACACCTGGTCGGGAGCCTGCTT
GCGCAACGGACGACTTCCAGAAAGCTCTTGACCGGAATACCTTGTTCGAT
TTCGTCAACATCCTGCCTACCAAGTTCTCCTTCATTGCCGCCATTGTGGG
GCAACCTGGCTTGGATTCTGGCTTAGCCCAACTACCGCAATGTCCCTTTC
AACCGCTGTGCCTGCTTGTGTTCTGCGAACGTCCGGAGCCAGCCGCAGGA
GTACCAGTTGCACCGGGAAAGCTCTCCACTCTAACCAGTCAGGTGAATGG
AACATTCATTGCCGACTTCTCTCAGGCAGCCGTTTAA
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protein sequence of Ggra92.t1

>Ggra92.t1 ID=Ggra92.t1|Name=Ggra92.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=179bp
MAQQLPQVISELSTLANDLIVNLFGILAVQQALQLIPSLSLRNGPSLLLR
VIEDSRSANIGWTGFNARHIIIVVGDTPGREPACATDDFQKALDRNTLFD
FVNILPTKFSFIAAIVGQPGLDSGLAQLPQCPFQPLCLLVFCERPEPAAG
VPVAPGKLSTLTSQVNGTFIADFSQAAV*
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mRNA from alignment at tig00000890_pilon:23387..24007-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra92.t1 ID=Ggra92.t1|Name=Ggra92.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=621bp|location=Sequence derived from alignment at tig00000890_pilon:23387..24007- (Gracilaria gracilis GNS1m male)
ATGGCTCAACAGCTGCCACAAGTGATCTCTGAGCTGTCTACGTTAGCGAA
CGATTTAATAGTCAACCTTTTTGGAATCTTGGGTGTGGCTGTGTACGACG
GTGAACAATCGTGCGATAAGTTTGAGGCGTACTGATCGTTGCAGTCCTTG
ACGACGAACGCAACAGCCGTGCAGCAAGCTCTCCAGCTCATACCTTCCTT
GTCACTTCGAAACGGTCCTAGTCTGTTGCTTCGCGTCATTGAAGATTCGC
GTAGTGCCAACATCGGATGGACCGGTTTCAATGCGAGACACATCATCATC
GTTGTTGGAGATACACCTGGTCGGGAGCCTGCTTGCGCAACGGACGACTT
CCAGAAAGCTCTTGACCGGAATACCTTGTTCGATTTCGTCAACATCCTGC
CTACCAAGTTCTCCTTCATTGCCGCCATTGTGGGGCAACCTGGCTTGGAT
TCTGGCTTAGCCCAACTACCGCAATGTCCCTTTCAACCGCTGTGCCTGCT
TGTGTTCTGCGAACGTCCGGAGCCAGCCGCAGGAGTACCAGTTGCACCGG
GAAAGCTCTCCACTCTAACCAGTCAGGTGAATGGAACATTCATTGCCGAC
TTCTCTCAGGCAGCCGTTTAA
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Coding sequence (CDS) from alignment at tig00000890_pilon:23387..24007-

>Ggra92.t1 ID=Ggra92.t1|Name=Ggra92.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=537bp|location=Sequence derived from alignment at tig00000890_pilon:23387..24007- (Gracilaria gracilis GNS1m male)
ATGGCTCAACAGCTGCCACAAGTGATCTCTGAGCTGTCTACGTTAGCGAA
CGATTTAATAGTCAACCTTTTTGGAATCTTGGCCGTGCAGCAAGCTCTCC
AGCTCATACCTTCCTTGTCACTTCGAAACGGTCCTAGTCTGTTGCTTCGC
GTCATTGAAGATTCGCGTAGTGCCAACATCGGATGGACCGGTTTCAATGC
GAGACACATCATCATCGTTGTTGGAGATACACCTGGTCGGGAGCCTGCTT
GCGCAACGGACGACTTCCAGAAAGCTCTTGACCGGAATACCTTGTTCGAT
TTCGTCAACATCCTGCCTACCAAGTTCTCCTTCATTGCCGCCATTGTGGG
GCAACCTGGCTTGGATTCTGGCTTAGCCCAACTACCGCAATGTCCCTTTC
AACCGCTGTGCCTGCTTGTGTTCTGCGAACGTCCGGAGCCAGCCGCAGGA
GTACCAGTTGCACCGGGAAAGCTCTCCACTCTAACCAGTCAGGTGAATGG
AACATTCATTGCCGACTTCTCTCAGGCAGCCGTTTAA
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