Ggra10718.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10718.t1
Unique Name	Ggra10718.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	707

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000888_pilon	contig	tig00000888_pilon:721414..723534 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10718	Ggra10718	Gracilaria gracilis GNS1m male	gene	tig00000888_pilon 721414..723534 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10718.t1.start1	Ggra10718.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000888_pilon 721414..721416 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10718.t1.CDS1	Ggra10718.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000888_pilon 721414..723534 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10718.t1.exon1	Ggra10718.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000888_pilon 721414..723534 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10718.t1.stop1	Ggra10718.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000888_pilon 723532..723534 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10718.t1	Ggra10718.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000888_pilon 721414..723534 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000888_pilon:721414..723534+
coding sequence from alignment at tig00000888_pilon:721414..723534+

mRNA sequence

>Ggra10718.t1 ID=Ggra10718.t1|Name=Ggra10718.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=707bp
MVRKAHSTDMNVAEDNWTLFHEKLLSEGDILGKSAALGYGRFSRIVDGSL
NVLCQQSNGDDFRSIFRAFCVLQNQQDAQLPMLQKLWGFDNLKQAEDVVD
TFAKVSLVRKLHRSSAISVRVDDLVLGIARQRASERNEEQSFFRNLVDNY
DPQLKFSAVLQLCQVLQETPKDKMFFRDAAQNRIEKLRELETFYGKAVLS
AEEIIRKLESSSNKESMNDLNKIATDLYSNFEQLGVYVAQVNSSVIKRFK
QMNELVQKCGDDLNQFLGFVTMNFAQTLPLLYSTALTSDSLPVLQSAFVQ
ALQNPLVAEENCRKLISKDSCKQSLEEWYAAHRLLMIAVDNDKLDPSADV
DGKPFYWRDQLYCMAQRLHIANAEDRKQVFRCLKEAANRGLIDTPDAYIQ
GINTMELVREETSRLKTAVLVLLNRVVKAEATAEELFLDLRSAFENYKRR
QFYCNLAGIGIALIPLVGGALGKALLSGTELVGNMSSGDFMECTLSITTA
VLSDENLMKLSRNRRDEVENIFAENRFTRKGVQELFATRGNMGEVQLRIE
YPGNGEGENGTTQTPEAHQERDLREREESEREQIIEEIVVSSEQSAVDQE
PRDNTSAENLNLSAVQTTKDLAEAWATFVLGVKGTEEDNNNDIVVSCLLE
LLENESIPPETLRTALPAEVEEVRIAAISTIEQRMGSAMKIGEKIRMRKF
LDSFTA*

spliced messenger RNA

>Ggra10718.t1 ID=Ggra10718.t1|Name=Ggra10718.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2121bp|location=Sequence derived from alignment at tig00000888_pilon:721414..723534+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atggtccgcaaagCCCACTCCACTGATATGAACGTTGCTGAAGATAATTG
GACTCTTTTCCATGAAAAGCTTTTGTCAGAGGGCGATATTCTTGGAAAAT
CGGCAGCACTTGGGTACGGGCGTTTTTCGCGGATTGTTGACGGCTCCCTG
AATGTGCTATGTCAACAAAGTAATGGTGACGACTTTCGTAGCATATTCCG
AGCCTTTTGCGTTCTCCAAAACCAACAAGATGCCCAACTTCCAATGCTAC
AAAAGTTGTGGGGCTTTGATAACTTGAAACAGGCTGAGGATGTGGTGGAT
ACGTTTGCCAAAGTGTCTCTTGTTCGCAAGCTGCACCGTAGCAGTGCAAT
CTCTGTCCGGGTTGATGATCTAGTCCTGGGTATTGCCCGTCAAAGAGCCT
CAGAACGGAACGAAGAACAGTCGTTCTTCAGAAATCTCGTGGATAATTAC
GATCCCCAACTGAAGTTCTCAGCCGTGTTGCAACTTTGCCAAGTGCTACA
AGAGACACCAAAAGACAAAATGTTTTTTAGAGACGCTGCTCAGAACAGAA
TAGAAAAGCTTCGAGAGTTGGAGACCTTTTATGGCAAAGCTGTATTATCG
GCTGAGGAAATCATTCGAAAGCTTGAATCTTCTTCAAACAAAGAATCAAT
GAACGATTTGAATAAGATTGCAACCGACTTATACTCTAACTTTGAGCAAC
TTGGAGTATATGTGGCACAAGTCAACAGTAGCGTTATAAAACGCTTCAAA
CAAATGAACGAGCTTGTACAAAAATGCGGGGATGATTTGAATCAGTTCCT
TGGTTTCGTCACCATGAACTTCGCCCAGACACTACCGCTACTCTATTCTA
CCGCTTTGACAAGCGACTCGCTGCCGGTGTTGCAAAGTGCATTTGTGCAG
GCGCTCCAGAACCCACTTGTGGCAGAAGAAAATTGCAGAAAGCTGATTTC
GAAGGATAGTTGTAAGCAGTCCTTGGAAGAATGGTACGCTGCCCATCGTC
TCTTGATGATTGCTGTCGATAATGACAAGCTAGATCCCTCTGCCGATGTT
GACGGAAAGCCCTTCTACTGGCGAGATCAGCTCTACTGTATGGCGCAACG
TCTGCATATAGCAAATGCTGAAGATAGGAAACAGGTTTTTAGGTGTTTAA
AGGAAGCAGCTAATCGGGGGCTCATTGACACGCCCGACGCTTATATTCAA
GGCATTAACACAATGGAATTGGTGCGAGAGGAGACCTCCCGTTTGAAAAC
TGCTGTACTGGTTCTGCTAAATCGTGTAGTGAAAGCTGAGGCAACAGCTG
AGGAGCTTTTCCTAGATCTTCGATCGGCATTTGAAAACTACAAGAGAAGG
CAGTTTTATTGCAACCTGGCCGGAATTGGTATAGCGCTGATCCCCTTAGT
TGGAGGCGCTTTAGGAAAAGCTCTACTCTCTGGCACTGAGTTGGTTGGAA
ACATGTCTTCCGGCGATTTCATGGAATGCACTCTTTCAATCACTACCGCG
GTACTCTCCGATGAGAATTTAATGAAGTTGAGTCGGAATAGGCGGGATGA
AGTCGAGAATATATTTGCAGAGAATAGATTCACAAGGAAAGGAGTTCAAG
AACTTTTTGCAACCAGAGGAAACATGGGAGAAGTGCAACTGAGAATAGAG
TACCCAGGCAATGGTGAAGGTGAAAATGGTACTACTCAAACTCCAGAAGC
GCATCAGGAAAGGGATCTAAGGGAACGTGAAGAAAGTGAGCGGGAACAAA
TCATTGAAGAAATCGTTGTAAGCTCCGAACAGTCTGCTGTTGATCAGGAA
CCAAGAGACAATACTAGTGCTGAAAACTTGAATCTGTCCGCAGTACAGAC
GACCAAGGACCTGGCTGAGGCTTGGGCCACCTTCGTACTGGGTGTGAAAG
GGACCGAAGAAGACAATAATAACGATATTGTGGTTTCATGTTTGTTAGAG
TTGCTGGAGAACGAATCGATCCCTCCCGAGACATTGAGAACGGCATTGCC
CGCAGAAGTGGAGGAAGTGAGAATCGCGGCAATCTCAACAATCGAACAGA
GAATGGGAAGTGCAATGAAGATAGGAGAGAAGATTCGAATGAGAAAGTTC
TTGGATAGTTTTACTGCCTAA

protein sequence of Ggra10718.t1

>Ggra10718.t1 ID=Ggra10718.t1|Name=Ggra10718.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=707bp
MVRKAHSTDMNVAEDNWTLFHEKLLSEGDILGKSAALGYGRFSRIVDGSL
NVLCQQSNGDDFRSIFRAFCVLQNQQDAQLPMLQKLWGFDNLKQAEDVVD
TFAKVSLVRKLHRSSAISVRVDDLVLGIARQRASERNEEQSFFRNLVDNY
DPQLKFSAVLQLCQVLQETPKDKMFFRDAAQNRIEKLRELETFYGKAVLS
AEEIIRKLESSSNKESMNDLNKIATDLYSNFEQLGVYVAQVNSSVIKRFK
QMNELVQKCGDDLNQFLGFVTMNFAQTLPLLYSTALTSDSLPVLQSAFVQ
ALQNPLVAEENCRKLISKDSCKQSLEEWYAAHRLLMIAVDNDKLDPSADV
DGKPFYWRDQLYCMAQRLHIANAEDRKQVFRCLKEAANRGLIDTPDAYIQ
GINTMELVREETSRLKTAVLVLLNRVVKAEATAEELFLDLRSAFENYKRR
QFYCNLAGIGIALIPLVGGALGKALLSGTELVGNMSSGDFMECTLSITTA
VLSDENLMKLSRNRRDEVENIFAENRFTRKGVQELFATRGNMGEVQLRIE
YPGNGEGENGTTQTPEAHQERDLREREESEREQIIEEIVVSSEQSAVDQE
PRDNTSAENLNLSAVQTTKDLAEAWATFVLGVKGTEEDNNNDIVVSCLLE
LLENESIPPETLRTALPAEVEEVRIAAISTIEQRMGSAMKIGEKIRMRKF
LDSFTA*

mRNA from alignment at tig00000888_pilon:721414..723534+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10718.t1 ID=Ggra10718.t1|Name=Ggra10718.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2121bp|location=Sequence derived from alignment at tig00000888_pilon:721414..723534+ (Gracilaria gracilis GNS1m male)
atggtccgcaaagCCCACTCCACTGATATGAACGTTGCTGAAGATAATTG
GACTCTTTTCCATGAAAAGCTTTTGTCAGAGGGCGATATTCTTGGAAAAT
CGGCAGCACTTGGGTACGGGCGTTTTTCGCGGATTGTTGACGGCTCCCTG
AATGTGCTATGTCAACAAAGTAATGGTGACGACTTTCGTAGCATATTCCG
AGCCTTTTGCGTTCTCCAAAACCAACAAGATGCCCAACTTCCAATGCTAC
AAAAGTTGTGGGGCTTTGATAACTTGAAACAGGCTGAGGATGTGGTGGAT
ACGTTTGCCAAAGTGTCTCTTGTTCGCAAGCTGCACCGTAGCAGTGCAAT
CTCTGTCCGGGTTGATGATCTAGTCCTGGGTATTGCCCGTCAAAGAGCCT
CAGAACGGAACGAAGAACAGTCGTTCTTCAGAAATCTCGTGGATAATTAC
GATCCCCAACTGAAGTTCTCAGCCGTGTTGCAACTTTGCCAAGTGCTACA
AGAGACACCAAAAGACAAAATGTTTTTTAGAGACGCTGCTCAGAACAGAA
TAGAAAAGCTTCGAGAGTTGGAGACCTTTTATGGCAAAGCTGTATTATCG
GCTGAGGAAATCATTCGAAAGCTTGAATCTTCTTCAAACAAAGAATCAAT
GAACGATTTGAATAAGATTGCAACCGACTTATACTCTAACTTTGAGCAAC
TTGGAGTATATGTGGCACAAGTCAACAGTAGCGTTATAAAACGCTTCAAA
CAAATGAACGAGCTTGTACAAAAATGCGGGGATGATTTGAATCAGTTCCT
TGGTTTCGTCACCATGAACTTCGCCCAGACACTACCGCTACTCTATTCTA
CCGCTTTGACAAGCGACTCGCTGCCGGTGTTGCAAAGTGCATTTGTGCAG
GCGCTCCAGAACCCACTTGTGGCAGAAGAAAATTGCAGAAAGCTGATTTC
GAAGGATAGTTGTAAGCAGTCCTTGGAAGAATGGTACGCTGCCCATCGTC
TCTTGATGATTGCTGTCGATAATGACAAGCTAGATCCCTCTGCCGATGTT
GACGGAAAGCCCTTCTACTGGCGAGATCAGCTCTACTGTATGGCGCAACG
TCTGCATATAGCAAATGCTGAAGATAGGAAACAGGTTTTTAGGTGTTTAA
AGGAAGCAGCTAATCGGGGGCTCATTGACACGCCCGACGCTTATATTCAA
GGCATTAACACAATGGAATTGGTGCGAGAGGAGACCTCCCGTTTGAAAAC
TGCTGTACTGGTTCTGCTAAATCGTGTAGTGAAAGCTGAGGCAACAGCTG
AGGAGCTTTTCCTAGATCTTCGATCGGCATTTGAAAACTACAAGAGAAGG
CAGTTTTATTGCAACCTGGCCGGAATTGGTATAGCGCTGATCCCCTTAGT
TGGAGGCGCTTTAGGAAAAGCTCTACTCTCTGGCACTGAGTTGGTTGGAA
ACATGTCTTCCGGCGATTTCATGGAATGCACTCTTTCAATCACTACCGCG
GTACTCTCCGATGAGAATTTAATGAAGTTGAGTCGGAATAGGCGGGATGA
AGTCGAGAATATATTTGCAGAGAATAGATTCACAAGGAAAGGAGTTCAAG
AACTTTTTGCAACCAGAGGAAACATGGGAGAAGTGCAACTGAGAATAGAG
TACCCAGGCAATGGTGAAGGTGAAAATGGTACTACTCAAACTCCAGAAGC
GCATCAGGAAAGGGATCTAAGGGAACGTGAAGAAAGTGAGCGGGAACAAA
TCATTGAAGAAATCGTTGTAAGCTCCGAACAGTCTGCTGTTGATCAGGAA
CCAAGAGACAATACTAGTGCTGAAAACTTGAATCTGTCCGCAGTACAGAC
GACCAAGGACCTGGCTGAGGCTTGGGCCACCTTCGTACTGGGTGTGAAAG
GGACCGAAGAAGACAATAATAACGATATTGTGGTTTCATGTTTGTTAGAG
TTGCTGGAGAACGAATCGATCCCTCCCGAGACATTGAGAACGGCATTGCC
CGCAGAAGTGGAGGAAGTGAGAATCGCGGCAATCTCAACAATCGAACAGA
GAATGGGAAGTGCAATGAAGATAGGAGAGAAGATTCGAATGAGAAAGTTC
TTGGATAGTTTTACTGCCTAA

Coding sequence (CDS) from alignment at tig00000888_pilon:721414..723534+

>Ggra10718.t1 ID=Ggra10718.t1|Name=Ggra10718.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2121bp|location=Sequence derived from alignment at tig00000888_pilon:721414..723534+ (Gracilaria gracilis GNS1m male)
atggtccgcaaagCCCACTCCACTGATATGAACGTTGCTGAAGATAATTG
GACTCTTTTCCATGAAAAGCTTTTGTCAGAGGGCGATATTCTTGGAAAAT
CGGCAGCACTTGGGTACGGGCGTTTTTCGCGGATTGTTGACGGCTCCCTG
AATGTGCTATGTCAACAAAGTAATGGTGACGACTTTCGTAGCATATTCCG
AGCCTTTTGCGTTCTCCAAAACCAACAAGATGCCCAACTTCCAATGCTAC
AAAAGTTGTGGGGCTTTGATAACTTGAAACAGGCTGAGGATGTGGTGGAT
ACGTTTGCCAAAGTGTCTCTTGTTCGCAAGCTGCACCGTAGCAGTGCAAT
CTCTGTCCGGGTTGATGATCTAGTCCTGGGTATTGCCCGTCAAAGAGCCT
CAGAACGGAACGAAGAACAGTCGTTCTTCAGAAATCTCGTGGATAATTAC
GATCCCCAACTGAAGTTCTCAGCCGTGTTGCAACTTTGCCAAGTGCTACA
AGAGACACCAAAAGACAAAATGTTTTTTAGAGACGCTGCTCAGAACAGAA
TAGAAAAGCTTCGAGAGTTGGAGACCTTTTATGGCAAAGCTGTATTATCG
GCTGAGGAAATCATTCGAAAGCTTGAATCTTCTTCAAACAAAGAATCAAT
GAACGATTTGAATAAGATTGCAACCGACTTATACTCTAACTTTGAGCAAC
TTGGAGTATATGTGGCACAAGTCAACAGTAGCGTTATAAAACGCTTCAAA
CAAATGAACGAGCTTGTACAAAAATGCGGGGATGATTTGAATCAGTTCCT
TGGTTTCGTCACCATGAACTTCGCCCAGACACTACCGCTACTCTATTCTA
CCGCTTTGACAAGCGACTCGCTGCCGGTGTTGCAAAGTGCATTTGTGCAG
GCGCTCCAGAACCCACTTGTGGCAGAAGAAAATTGCAGAAAGCTGATTTC
GAAGGATAGTTGTAAGCAGTCCTTGGAAGAATGGTACGCTGCCCATCGTC
TCTTGATGATTGCTGTCGATAATGACAAGCTAGATCCCTCTGCCGATGTT
GACGGAAAGCCCTTCTACTGGCGAGATCAGCTCTACTGTATGGCGCAACG
TCTGCATATAGCAAATGCTGAAGATAGGAAACAGGTTTTTAGGTGTTTAA
AGGAAGCAGCTAATCGGGGGCTCATTGACACGCCCGACGCTTATATTCAA
GGCATTAACACAATGGAATTGGTGCGAGAGGAGACCTCCCGTTTGAAAAC
TGCTGTACTGGTTCTGCTAAATCGTGTAGTGAAAGCTGAGGCAACAGCTG
AGGAGCTTTTCCTAGATCTTCGATCGGCATTTGAAAACTACAAGAGAAGG
CAGTTTTATTGCAACCTGGCCGGAATTGGTATAGCGCTGATCCCCTTAGT
TGGAGGCGCTTTAGGAAAAGCTCTACTCTCTGGCACTGAGTTGGTTGGAA
ACATGTCTTCCGGCGATTTCATGGAATGCACTCTTTCAATCACTACCGCG
GTACTCTCCGATGAGAATTTAATGAAGTTGAGTCGGAATAGGCGGGATGA
AGTCGAGAATATATTTGCAGAGAATAGATTCACAAGGAAAGGAGTTCAAG
AACTTTTTGCAACCAGAGGAAACATGGGAGAAGTGCAACTGAGAATAGAG
TACCCAGGCAATGGTGAAGGTGAAAATGGTACTACTCAAACTCCAGAAGC
GCATCAGGAAAGGGATCTAAGGGAACGTGAAGAAAGTGAGCGGGAACAAA
TCATTGAAGAAATCGTTGTAAGCTCCGAACAGTCTGCTGTTGATCAGGAA
CCAAGAGACAATACTAGTGCTGAAAACTTGAATCTGTCCGCAGTACAGAC
GACCAAGGACCTGGCTGAGGCTTGGGCCACCTTCGTACTGGGTGTGAAAG
GGACCGAAGAAGACAATAATAACGATATTGTGGTTTCATGTTTGTTAGAG
TTGCTGGAGAACGAATCGATCCCTCCCGAGACATTGAGAACGGCATTGCC
CGCAGAAGTGGAGGAAGTGAGAATCGCGGCAATCTCAACAATCGAACAGA
GAATGGGAAGTGCAATGAAGATAGGAGAGAAGATTCGAATGAGAAAGTTC
TTGGATAGTTTTACTGCCTAA