Ggra10706.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10706.t1
Unique NameGgra10706.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length226
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000888_piloncontigtig00000888_pilon:557971..558648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10706Ggra10706Gracilaria gracilis GNS1m malegenetig00000888_pilon 557971..558648 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10706.t1.start1Ggra10706.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000888_pilon 557971..557973 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10706.t1.CDS1Ggra10706.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000888_pilon 557971..558648 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10706.t1.exon1Ggra10706.t1.exon1Gracilaria gracilis GNS1m maleexontig00000888_pilon 557971..558648 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10706.t1.stop1Ggra10706.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000888_pilon 558646..558648 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10706.t1Ggra10706.t1Gracilaria gracilis GNS1m malepolypeptidetig00000888_pilon 557971..558648 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10706.t1 ID=Ggra10706.t1|Name=Ggra10706.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=226bp
MKLPFCTLLAVLSFAPTITHSHSVPIAQPSPCAIPTGQPSFIEPFPSDEL
FPSDELLPFDESLPSDEPFLPTPSNPAQLERPEPSVDPLPFLIITCEALA
GCNAPDRRRFDCTNAQVDIQPNPNTTVLLLSQPDTLLGSRVTYRARVRAA
SIGGGDPIATIPWVPTAADAASTVCVETEPAPTLSVASFGLLFIGNPFGT
CCGACSFISGASVVVPPPLSCCRPC*
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spliced messenger RNA

>Ggra10706.t1 ID=Ggra10706.t1|Name=Ggra10706.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=678bp|location=Sequence derived from alignment at tig00000888_pilon:557971..558648+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACTCCCTTTCTGCACCCTCCTCGCCGTGCTCTCCTTCGCACCGAC
CATCACTCATTCCCACTCGGTCCCCATCGCGCAGCCGTCGCCCTGCGCCA
TCCCCACCGGGCAGCCCTCGTTCATCGAGCCCTTTCCATCGGACGAGCTA
TTTCCTTCCGACGAGCTACTTCCTTTCGACGAGTCACTTCCTTCCGATGA
GCCCTTCCTCCCTACGCCATCCAACCCCGCCCAGCTGGAACGCCCCGAGC
CGTCAGTAGACCCTCTTCCCTTTCTCATAATCACATGTGAAGCTCTCGCC
GGCTGCAACGCGCCAGATCGGCGTCGTTTCGACTGCACCAACGCTCAAGT
CGATATCCAACCCAACCCCAACACCACCGTGCTGCTCCTCTCGCAACCCG
ACACGCTCCTCGGCTCCCGCGTCACGTACCGCGCGCGAGTGCGCGCCGCG
TCCATAGGGGGAGGCGACCCAATCGCAACCATTCCGTGGGTGCCCACGGC
GGCGGACGCCGCGTCGACCGTCTGCGTGGAGACGGAGCCTGCTCCCACCC
TGTCCGTCGCCTCATTCGGCCTGCTGTTCATTGGGAATCCGTTCGGCACT
TGCTGCGGCGCGTGCTCGTTTATCTCTGGTGCGAGCGTTGTTGTACCGCC
GCCGTTGTCTTGCTGTCGCCCTTGTTGA
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protein sequence of Ggra10706.t1

>Ggra10706.t1 ID=Ggra10706.t1|Name=Ggra10706.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=226bp
MKLPFCTLLAVLSFAPTITHSHSVPIAQPSPCAIPTGQPSFIEPFPSDEL
FPSDELLPFDESLPSDEPFLPTPSNPAQLERPEPSVDPLPFLIITCEALA
GCNAPDRRRFDCTNAQVDIQPNPNTTVLLLSQPDTLLGSRVTYRARVRAA
SIGGGDPIATIPWVPTAADAASTVCVETEPAPTLSVASFGLLFIGNPFGT
CCGACSFISGASVVVPPPLSCCRPC*
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mRNA from alignment at tig00000888_pilon:557971..558648+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10706.t1 ID=Ggra10706.t1|Name=Ggra10706.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=678bp|location=Sequence derived from alignment at tig00000888_pilon:557971..558648+ (Gracilaria gracilis GNS1m male)
ATGAAACTCCCTTTCTGCACCCTCCTCGCCGTGCTCTCCTTCGCACCGAC
CATCACTCATTCCCACTCGGTCCCCATCGCGCAGCCGTCGCCCTGCGCCA
TCCCCACCGGGCAGCCCTCGTTCATCGAGCCCTTTCCATCGGACGAGCTA
TTTCCTTCCGACGAGCTACTTCCTTTCGACGAGTCACTTCCTTCCGATGA
GCCCTTCCTCCCTACGCCATCCAACCCCGCCCAGCTGGAACGCCCCGAGC
CGTCAGTAGACCCTCTTCCCTTTCTCATAATCACATGTGAAGCTCTCGCC
GGCTGCAACGCGCCAGATCGGCGTCGTTTCGACTGCACCAACGCTCAAGT
CGATATCCAACCCAACCCCAACACCACCGTGCTGCTCCTCTCGCAACCCG
ACACGCTCCTCGGCTCCCGCGTCACGTACCGCGCGCGAGTGCGCGCCGCG
TCCATAGGGGGAGGCGACCCAATCGCAACCATTCCGTGGGTGCCCACGGC
GGCGGACGCCGCGTCGACCGTCTGCGTGGAGACGGAGCCTGCTCCCACCC
TGTCCGTCGCCTCATTCGGCCTGCTGTTCATTGGGAATCCGTTCGGCACT
TGCTGCGGCGCGTGCTCGTTTATCTCTGGTGCGAGCGTTGTTGTACCGCC
GCCGTTGTCTTGCTGTCGCCCTTGTTGA
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Coding sequence (CDS) from alignment at tig00000888_pilon:557971..558648+

>Ggra10706.t1 ID=Ggra10706.t1|Name=Ggra10706.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=678bp|location=Sequence derived from alignment at tig00000888_pilon:557971..558648+ (Gracilaria gracilis GNS1m male)
ATGAAACTCCCTTTCTGCACCCTCCTCGCCGTGCTCTCCTTCGCACCGAC
CATCACTCATTCCCACTCGGTCCCCATCGCGCAGCCGTCGCCCTGCGCCA
TCCCCACCGGGCAGCCCTCGTTCATCGAGCCCTTTCCATCGGACGAGCTA
TTTCCTTCCGACGAGCTACTTCCTTTCGACGAGTCACTTCCTTCCGATGA
GCCCTTCCTCCCTACGCCATCCAACCCCGCCCAGCTGGAACGCCCCGAGC
CGTCAGTAGACCCTCTTCCCTTTCTCATAATCACATGTGAAGCTCTCGCC
GGCTGCAACGCGCCAGATCGGCGTCGTTTCGACTGCACCAACGCTCAAGT
CGATATCCAACCCAACCCCAACACCACCGTGCTGCTCCTCTCGCAACCCG
ACACGCTCCTCGGCTCCCGCGTCACGTACCGCGCGCGAGTGCGCGCCGCG
TCCATAGGGGGAGGCGACCCAATCGCAACCATTCCGTGGGTGCCCACGGC
GGCGGACGCCGCGTCGACCGTCTGCGTGGAGACGGAGCCTGCTCCCACCC
TGTCCGTCGCCTCATTCGGCCTGCTGTTCATTGGGAATCCGTTCGGCACT
TGCTGCGGCGCGTGCTCGTTTATCTCTGGTGCGAGCGTTGTTGTACCGCC
GCCGTTGTCTTGCTGTCGCCCTTGTTGA
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