Ggra10724.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10724.t1
Unique NameGgra10724.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length348
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000888_piloncontigtig00000888_pilon:869504..870547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6087.XP_004207085.1
Max annot lvl33208|Metazoa
Evalue2.36e-18
EggNOG OGs2D376@1|root,2SQFQ@2759|Eukaryota,3ANNG@33154|Opisthokonta,3C1I6@33208|Metazoa
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10724Ggra10724Gracilaria gracilis GNS1m malegenetig00000888_pilon 869504..870547 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10724.t1.stop1Ggra10724.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000888_pilon 869504..869506 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10724.t1.CDS1Ggra10724.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000888_pilon 869504..870547 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10724.t1.exon1Ggra10724.t1.exon1Gracilaria gracilis GNS1m maleexontig00000888_pilon 869504..870547 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10724.t1.start1Ggra10724.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000888_pilon 870545..870547 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10724.t1Ggra10724.t1Gracilaria gracilis GNS1m malepolypeptidetig00000888_pilon 869504..870547 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10724.t1 ID=Ggra10724.t1|Name=Ggra10724.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=348bp
MIRISRIITFSLLTFSLASTAQLANGLEWQTSSDAVWAMNCDFRGNDIGS
AQMRGEDCSRACDLKRDCSHFAWTRYNGGTCWFKTGRSVSQSSAISNSDP
GAVCGILRSLLLANGRDSFGMTPHDPLADARPYLPIFRFDDDADGWCFPD
DKEASPSRDGICNGRFDRRAPVFVHSKKCGRYTVYQFNLWYGWQKGCVNQ
LFGGGRHGNDNEYVQIWTLGASGPVARVRYNQHNGYYFREPGRGAEMHGS
RAVVYIGKIAHGAYHRGCTGGKFWQTLIPNSGTDFCVGGCGYWDDFRNSE
DSNFVLDTGSLRKDRSPREIDCDVPNCTPGHNSWRSLASAACFGLDN*
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spliced messenger RNA

>Ggra10724.t1 ID=Ggra10724.t1|Name=Ggra10724.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1044bp|location=Sequence derived from alignment at tig00000888_pilon:869504..870547- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCGCATCAGTCGCATCATCACATTTTCGCTTTTGACCTTTTCCTT
GGCTTCTACCGCCCAACTCGCGAACGGTTTGGAGTGGCAAACCTCATCCG
ATGCAGTATGGGCCATGAACTGTGACTTTCGTGGCAATGACATTGGCTCC
GCCCAGATGCGCGGTGAAGACTGCTCCCGAGCTTGTGACCTGAAAAGGGA
CTGCTCACACTTTGCTTGGACTCGTTACAACGGCGGTACATGCTGGTTTA
AGACTGGTCGAAGCGTCTCGCAATCCTCTGCCATTTCTAACTCGGACCCT
GGTGCAGTGTGCGGAATACTTCGCAGCCTCCTTCTTGCCAATGGACGAGA
TTCGTTTGGTATGACTCCTCATGATCCTTTGGCGGACGCGAGACCGTACC
TACCAATCTTCCGATTTGACGACGATGCCGATGGGTGGTGCTTCCCCGAT
GACAAGGAAGCAAGCCCGTCACGCGATGGAATTTGTAACGGCAGGTTCGA
TCGGAGAGCTCCTGTTTTCGTTCATTCGAAGAAATGTGGTCGGTACACTG
TGTATCAGTTCAACCTGTGGTACGGGTGGCAAAAAGGTTGCGTCAACCAG
CTTTTCGGCGGTGGTCGTCATGGCAACGACAATGAATACGTTCAGATCTG
GACGCTTGGGGCATCTGGTCCCGTTGCACGAGTTAGATACAATCAACACA
ACGGCTACTATTTCAGGGAACCTGGAAGAGGCGCAGAAATGCATGGAAGT
CGAGCTGTGGTGTACATTGGAAAGATTGCTCATGGTGCATATCATCGAGG
CTGCACAGGCGGGAAATTCTGGCAGACGTTGATTCCTAACAGTGGTACCG
ATTTCTGTGTGGGTGGATGCGGGTACTGGGACGACTTCAGAAACAGCGAG
GATAGTAATTTTGTTCTGGATACCGGTTCGTTGCGAAAGGATCGCAGTCC
CAGAGAAATAGACTGTGACGTCCCAAACTGCACACCGGGACACAACTCAT
GGCGCAGCCTTGCTAGCGCCGCTTGTTTCGGTCTGGACAACTAG
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protein sequence of Ggra10724.t1

>Ggra10724.t1 ID=Ggra10724.t1|Name=Ggra10724.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=348bp
MIRISRIITFSLLTFSLASTAQLANGLEWQTSSDAVWAMNCDFRGNDIGS
AQMRGEDCSRACDLKRDCSHFAWTRYNGGTCWFKTGRSVSQSSAISNSDP
GAVCGILRSLLLANGRDSFGMTPHDPLADARPYLPIFRFDDDADGWCFPD
DKEASPSRDGICNGRFDRRAPVFVHSKKCGRYTVYQFNLWYGWQKGCVNQ
LFGGGRHGNDNEYVQIWTLGASGPVARVRYNQHNGYYFREPGRGAEMHGS
RAVVYIGKIAHGAYHRGCTGGKFWQTLIPNSGTDFCVGGCGYWDDFRNSE
DSNFVLDTGSLRKDRSPREIDCDVPNCTPGHNSWRSLASAACFGLDN*
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mRNA from alignment at tig00000888_pilon:869504..870547-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10724.t1 ID=Ggra10724.t1|Name=Ggra10724.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1044bp|location=Sequence derived from alignment at tig00000888_pilon:869504..870547- (Gracilaria gracilis GNS1m male)
ATGATTCGCATCAGTCGCATCATCACATTTTCGCTTTTGACCTTTTCCTT
GGCTTCTACCGCCCAACTCGCGAACGGTTTGGAGTGGCAAACCTCATCCG
ATGCAGTATGGGCCATGAACTGTGACTTTCGTGGCAATGACATTGGCTCC
GCCCAGATGCGCGGTGAAGACTGCTCCCGAGCTTGTGACCTGAAAAGGGA
CTGCTCACACTTTGCTTGGACTCGTTACAACGGCGGTACATGCTGGTTTA
AGACTGGTCGAAGCGTCTCGCAATCCTCTGCCATTTCTAACTCGGACCCT
GGTGCAGTGTGCGGAATACTTCGCAGCCTCCTTCTTGCCAATGGACGAGA
TTCGTTTGGTATGACTCCTCATGATCCTTTGGCGGACGCGAGACCGTACC
TACCAATCTTCCGATTTGACGACGATGCCGATGGGTGGTGCTTCCCCGAT
GACAAGGAAGCAAGCCCGTCACGCGATGGAATTTGTAACGGCAGGTTCGA
TCGGAGAGCTCCTGTTTTCGTTCATTCGAAGAAATGTGGTCGGTACACTG
TGTATCAGTTCAACCTGTGGTACGGGTGGCAAAAAGGTTGCGTCAACCAG
CTTTTCGGCGGTGGTCGTCATGGCAACGACAATGAATACGTTCAGATCTG
GACGCTTGGGGCATCTGGTCCCGTTGCACGAGTTAGATACAATCAACACA
ACGGCTACTATTTCAGGGAACCTGGAAGAGGCGCAGAAATGCATGGAAGT
CGAGCTGTGGTGTACATTGGAAAGATTGCTCATGGTGCATATCATCGAGG
CTGCACAGGCGGGAAATTCTGGCAGACGTTGATTCCTAACAGTGGTACCG
ATTTCTGTGTGGGTGGATGCGGGTACTGGGACGACTTCAGAAACAGCGAG
GATAGTAATTTTGTTCTGGATACCGGTTCGTTGCGAAAGGATCGCAGTCC
CAGAGAAATAGACTGTGACGTCCCAAACTGCACACCGGGACACAACTCAT
GGCGCAGCCTTGCTAGCGCCGCTTGTTTCGGTCTGGACAACTAG
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Coding sequence (CDS) from alignment at tig00000888_pilon:869504..870547-

>Ggra10724.t1 ID=Ggra10724.t1|Name=Ggra10724.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1044bp|location=Sequence derived from alignment at tig00000888_pilon:869504..870547- (Gracilaria gracilis GNS1m male)
ATGATTCGCATCAGTCGCATCATCACATTTTCGCTTTTGACCTTTTCCTT
GGCTTCTACCGCCCAACTCGCGAACGGTTTGGAGTGGCAAACCTCATCCG
ATGCAGTATGGGCCATGAACTGTGACTTTCGTGGCAATGACATTGGCTCC
GCCCAGATGCGCGGTGAAGACTGCTCCCGAGCTTGTGACCTGAAAAGGGA
CTGCTCACACTTTGCTTGGACTCGTTACAACGGCGGTACATGCTGGTTTA
AGACTGGTCGAAGCGTCTCGCAATCCTCTGCCATTTCTAACTCGGACCCT
GGTGCAGTGTGCGGAATACTTCGCAGCCTCCTTCTTGCCAATGGACGAGA
TTCGTTTGGTATGACTCCTCATGATCCTTTGGCGGACGCGAGACCGTACC
TACCAATCTTCCGATTTGACGACGATGCCGATGGGTGGTGCTTCCCCGAT
GACAAGGAAGCAAGCCCGTCACGCGATGGAATTTGTAACGGCAGGTTCGA
TCGGAGAGCTCCTGTTTTCGTTCATTCGAAGAAATGTGGTCGGTACACTG
TGTATCAGTTCAACCTGTGGTACGGGTGGCAAAAAGGTTGCGTCAACCAG
CTTTTCGGCGGTGGTCGTCATGGCAACGACAATGAATACGTTCAGATCTG
GACGCTTGGGGCATCTGGTCCCGTTGCACGAGTTAGATACAATCAACACA
ACGGCTACTATTTCAGGGAACCTGGAAGAGGCGCAGAAATGCATGGAAGT
CGAGCTGTGGTGTACATTGGAAAGATTGCTCATGGTGCATATCATCGAGG
CTGCACAGGCGGGAAATTCTGGCAGACGTTGATTCCTAACAGTGGTACCG
ATTTCTGTGTGGGTGGATGCGGGTACTGGGACGACTTCAGAAACAGCGAG
GATAGTAATTTTGTTCTGGATACCGGTTCGTTGCGAAAGGATCGCAGTCC
CAGAGAAATAGACTGTGACGTCCCAAACTGCACACCGGGACACAACTCAT
GGCGCAGCCTTGCTAGCGCCGCTTGTTTCGGTCTGGACAACTAG
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