Ggra10725.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10725.t1
Unique Name	Ggra10725.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	615

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000888_pilon	contig	tig00000888_pilon:873717..875561 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1541065.JRFE01000028_gene3421
Max annot lvl	1117\|Cyanobacteria
Evalue	3.38e-229
EggNOG OGs	COG0671@1\|root,COG0671@2\|Bacteria,1G24P@1117\|Cyanobacteria,3VIMU@52604\|Pleurocapsales
Description	phosphoesterase, PA-phosphatase related
COG category	I

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10725	Ggra10725	Gracilaria gracilis GNS1m male	gene	tig00000888_pilon 873717..875561 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10725.t1.stop1	Ggra10725.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000888_pilon 873717..873719 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10725.t1.CDS1	Ggra10725.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000888_pilon 873717..875561 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10725.t1.exon1	Ggra10725.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000888_pilon 873717..875561 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10725.t1.start1	Ggra10725.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000888_pilon 875559..875561 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10725.t1	Ggra10725.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000888_pilon 873717..875561 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000888_pilon:873717..875561-
coding sequence from alignment at tig00000888_pilon:873717..875561-

mRNA sequence

>Ggra10725.t1 ID=Ggra10725.t1|Name=Ggra10725.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=615bp
MSATKHANRANSAYEVREQAALLAKSRPHPRHIANREELRYRFPFGTQFG
ANQGRPSHLASFTKGFAHDPQTGVISNPNDFQQFILAMDSGDRATIAAVP
LGPRVAEGESRFTSGIASDPEVDVRAWESMGAGLTYDLEGPDAQAVTMPP
APALDSAELVTEISECYWMALLRDTPFANFDNDRDVLDAVNGLNETEWIK
YGTNPSTIPLSLTLEQRARLRPAVTAGNIFRGVTPGDLEGPYLSQFLLIG
NTGISKAHQIHDGFISYGAQRVDQKVRVAEPRRDFMTTWESFMDVQNGAD
VRGREVYEDTQGDRGFRFISTPRDLATYVHFDALYQAYLNACLILLGMRV
PFDKGLPFQLDDDIDRQQTFATFGGPHILSLVTEVATRALKAVRFQKFNV
HRRLRPEAVGGLVEKYRTEGGNPLFAGVEPLYNALKEQDSNLLGKVGRHN
ELQNQLSDNDIPRSQDKGAGRSYLLPMAFPEGSPMHPSYGAGHATVAGAC
VTVLKAFFDHAYELRDPETKQPFAFVANADGKSLDNRIGQYGNKALTVEG
ELNKVCSNICIGRNWAGVHYFTDYIESIRVGEQIALGVLEEQKLTFGENF
SMTVPLFDGGEIRI*

spliced messenger RNA

>Ggra10725.t1 ID=Ggra10725.t1|Name=Ggra10725.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1845bp|location=Sequence derived from alignment at tig00000888_pilon:873717..875561- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCCACCAAGCACGCCAACCGTGCCAACTCTGCCTATGAGGTGCG
AGAGCAAGCCGCCCTTCTGGCTAAGAGTCGTCCGCACCCGCGCCATATCG
CCAACCGGGAGGAACTTCGCTACCGCTTCCCGTTTGGAACCCAATTCGGA
GCCAATCAGGGTCGGCCTTCGCATCTCGCCAGTTTCACCAAGGGCTTCGC
TCATGACCCCCAGACCGGTGTGATCAGCAATCCCAATGATTTCCAACAGT
TCATCCTCGCCATGGACAGCGGCGATCGCGCCACCATTGCTGCCGTACCG
CTTGGTCCGCGCGTTGCGGAGGGTGAAAGCCGTTTCACCTCCGGTATAGC
GAGTGACCCCGAAGTCGATGTTCGCGCTTGGGAATCCATGGGTGCCGGCC
TCACCTATGATCTTGAGGGCCCTGATGCTCAGGCCGTCACCATGCCGCCC
GCGCCCGCCCTTGACAGTGCAGAATTGGTCACTGAGATTTCGGAATGCTA
TTGGATGGCTTTGCTTCGCGACACGCCTTTCGCCAACTTTGACAACGACA
GGGATGTGCTTGACGCTGTGAACGGTTTGAATGAAACCGAATGGATTAAA
TATGGCACCAACCCTTCCACCATTCCTCTATCTTTGACACTGGAGCAGCG
CGCACGCCTTCGTCCTGCCGTCACTGCCGGTAACATCTTCCGAGGAGTTA
CTCCCGGTGATTTGGAAGGTCCGTATCTGTCTCAATTCCTTCTCATCGGA
AACACCGGAATCAGCAAAGCGCATCAGATTCACGACGGTTTCATTAGTTA
CGGCGCTCAAAGGGTGGATCAAAAAGTGCGCGTGGCTGAACCTCGGCGTG
ACTTTATGACCACATGGGAATCCTTCATGGATGTTCAAAACGGCGCCGAC
GTGCGCGGCAGAGAAGTTTACGAGGATACGCAAGGAGACCGAGGCTTCCG
ATTCATAAGCACACCGCGTGACCTGGCTACGTACGTTCACTTTGATGCTT
TGTATCAGGCGTATTTGAACGCCTGTCTGATTTTGCTTGGAATGAGAGTT
CCATTTGACAAAGGATTGCCATTCCAACTTGATGATGACATCGACCGTCA
GCAGACCTTTGCTACATTCGGCGGGCCGCATATCTTGTCGTTGGTGACCG
AGGTAGCCACGCGCGCTCTGAAAGCTGTGCGATTCCAGAAGTTCAATGTG
CACAGACGTCTTCGTCCCGAGGCCGTGGGAGGACTTGTGGAGAAATACCG
AACAGAGGGCGGTAACCCGTTGTTCGCCGGCGTGGAACCGCTGTACAATG
CGCTGAAAGAGCAGGACTCGAACTTGTTAGGCAAGGTTGGACGTCATAAC
GAGTTACAGAACCAACTGTCAGATAACGATATTCCGCGATCACAAGATAA
GGGAGCAGGTAGAAGTTACTTGTTACCAATGGCATTCCCGGAGGGAAGCC
CCATGCATCCAAGTTACGGCGCGGGTCACGCAACGGTGGCCGGAGCGTGT
GTGACGGTTCTTAAGGCGTTCTTTGATCATGCATACGAGTTGCGTGATCC
GGAGACGAAGCAACCGTTTGCATTTGTGGCCAACGCTGATGGAAAGTCAC
TGGACAACCGCATTGGGCAGTATGGAAATAAGGCTTTGACTGTTGAGGGC
GAACTGAACAAGGTTTGCTCTAACATCTGCATCGGACGTAACTGGGCGGG
CGTGCACTACTTCACTGACTACATCGAATCGATCAGGGTTGGTGAACAGA
TTGCACTCGGAGTCTTGGAGGAACAGAAGCTGACGTTCGGCGAGAACTTT
TCAATGACAGTTCCGCTGTTCGACGGCGGGGAGATCCGCATCTAA

protein sequence of Ggra10725.t1

>Ggra10725.t1 ID=Ggra10725.t1|Name=Ggra10725.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=615bp
MSATKHANRANSAYEVREQAALLAKSRPHPRHIANREELRYRFPFGTQFG
ANQGRPSHLASFTKGFAHDPQTGVISNPNDFQQFILAMDSGDRATIAAVP
LGPRVAEGESRFTSGIASDPEVDVRAWESMGAGLTYDLEGPDAQAVTMPP
APALDSAELVTEISECYWMALLRDTPFANFDNDRDVLDAVNGLNETEWIK
YGTNPSTIPLSLTLEQRARLRPAVTAGNIFRGVTPGDLEGPYLSQFLLIG
NTGISKAHQIHDGFISYGAQRVDQKVRVAEPRRDFMTTWESFMDVQNGAD
VRGREVYEDTQGDRGFRFISTPRDLATYVHFDALYQAYLNACLILLGMRV
PFDKGLPFQLDDDIDRQQTFATFGGPHILSLVTEVATRALKAVRFQKFNV
HRRLRPEAVGGLVEKYRTEGGNPLFAGVEPLYNALKEQDSNLLGKVGRHN
ELQNQLSDNDIPRSQDKGAGRSYLLPMAFPEGSPMHPSYGAGHATVAGAC
VTVLKAFFDHAYELRDPETKQPFAFVANADGKSLDNRIGQYGNKALTVEG
ELNKVCSNICIGRNWAGVHYFTDYIESIRVGEQIALGVLEEQKLTFGENF
SMTVPLFDGGEIRI*

mRNA from alignment at tig00000888_pilon:873717..875561-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10725.t1 ID=Ggra10725.t1|Name=Ggra10725.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1845bp|location=Sequence derived from alignment at tig00000888_pilon:873717..875561- (Gracilaria gracilis GNS1m male)
ATGTCTGCCACCAAGCACGCCAACCGTGCCAACTCTGCCTATGAGGTGCG
AGAGCAAGCCGCCCTTCTGGCTAAGAGTCGTCCGCACCCGCGCCATATCG
CCAACCGGGAGGAACTTCGCTACCGCTTCCCGTTTGGAACCCAATTCGGA
GCCAATCAGGGTCGGCCTTCGCATCTCGCCAGTTTCACCAAGGGCTTCGC
TCATGACCCCCAGACCGGTGTGATCAGCAATCCCAATGATTTCCAACAGT
TCATCCTCGCCATGGACAGCGGCGATCGCGCCACCATTGCTGCCGTACCG
CTTGGTCCGCGCGTTGCGGAGGGTGAAAGCCGTTTCACCTCCGGTATAGC
GAGTGACCCCGAAGTCGATGTTCGCGCTTGGGAATCCATGGGTGCCGGCC
TCACCTATGATCTTGAGGGCCCTGATGCTCAGGCCGTCACCATGCCGCCC
GCGCCCGCCCTTGACAGTGCAGAATTGGTCACTGAGATTTCGGAATGCTA
TTGGATGGCTTTGCTTCGCGACACGCCTTTCGCCAACTTTGACAACGACA
GGGATGTGCTTGACGCTGTGAACGGTTTGAATGAAACCGAATGGATTAAA
TATGGCACCAACCCTTCCACCATTCCTCTATCTTTGACACTGGAGCAGCG
CGCACGCCTTCGTCCTGCCGTCACTGCCGGTAACATCTTCCGAGGAGTTA
CTCCCGGTGATTTGGAAGGTCCGTATCTGTCTCAATTCCTTCTCATCGGA
AACACCGGAATCAGCAAAGCGCATCAGATTCACGACGGTTTCATTAGTTA
CGGCGCTCAAAGGGTGGATCAAAAAGTGCGCGTGGCTGAACCTCGGCGTG
ACTTTATGACCACATGGGAATCCTTCATGGATGTTCAAAACGGCGCCGAC
GTGCGCGGCAGAGAAGTTTACGAGGATACGCAAGGAGACCGAGGCTTCCG
ATTCATAAGCACACCGCGTGACCTGGCTACGTACGTTCACTTTGATGCTT
TGTATCAGGCGTATTTGAACGCCTGTCTGATTTTGCTTGGAATGAGAGTT
CCATTTGACAAAGGATTGCCATTCCAACTTGATGATGACATCGACCGTCA
GCAGACCTTTGCTACATTCGGCGGGCCGCATATCTTGTCGTTGGTGACCG
AGGTAGCCACGCGCGCTCTGAAAGCTGTGCGATTCCAGAAGTTCAATGTG
CACAGACGTCTTCGTCCCGAGGCCGTGGGAGGACTTGTGGAGAAATACCG
AACAGAGGGCGGTAACCCGTTGTTCGCCGGCGTGGAACCGCTGTACAATG
CGCTGAAAGAGCAGGACTCGAACTTGTTAGGCAAGGTTGGACGTCATAAC
GAGTTACAGAACCAACTGTCAGATAACGATATTCCGCGATCACAAGATAA
GGGAGCAGGTAGAAGTTACTTGTTACCAATGGCATTCCCGGAGGGAAGCC
CCATGCATCCAAGTTACGGCGCGGGTCACGCAACGGTGGCCGGAGCGTGT
GTGACGGTTCTTAAGGCGTTCTTTGATCATGCATACGAGTTGCGTGATCC
GGAGACGAAGCAACCGTTTGCATTTGTGGCCAACGCTGATGGAAAGTCAC
TGGACAACCGCATTGGGCAGTATGGAAATAAGGCTTTGACTGTTGAGGGC
GAACTGAACAAGGTTTGCTCTAACATCTGCATCGGACGTAACTGGGCGGG
CGTGCACTACTTCACTGACTACATCGAATCGATCAGGGTTGGTGAACAGA
TTGCACTCGGAGTCTTGGAGGAACAGAAGCTGACGTTCGGCGAGAACTTT
TCAATGACAGTTCCGCTGTTCGACGGCGGGGAGATCCGCATCTAA

Coding sequence (CDS) from alignment at tig00000888_pilon:873717..875561-

>Ggra10725.t1 ID=Ggra10725.t1|Name=Ggra10725.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1845bp|location=Sequence derived from alignment at tig00000888_pilon:873717..875561- (Gracilaria gracilis GNS1m male)
ATGTCTGCCACCAAGCACGCCAACCGTGCCAACTCTGCCTATGAGGTGCG
AGAGCAAGCCGCCCTTCTGGCTAAGAGTCGTCCGCACCCGCGCCATATCG
CCAACCGGGAGGAACTTCGCTACCGCTTCCCGTTTGGAACCCAATTCGGA
GCCAATCAGGGTCGGCCTTCGCATCTCGCCAGTTTCACCAAGGGCTTCGC
TCATGACCCCCAGACCGGTGTGATCAGCAATCCCAATGATTTCCAACAGT
TCATCCTCGCCATGGACAGCGGCGATCGCGCCACCATTGCTGCCGTACCG
CTTGGTCCGCGCGTTGCGGAGGGTGAAAGCCGTTTCACCTCCGGTATAGC
GAGTGACCCCGAAGTCGATGTTCGCGCTTGGGAATCCATGGGTGCCGGCC
TCACCTATGATCTTGAGGGCCCTGATGCTCAGGCCGTCACCATGCCGCCC
GCGCCCGCCCTTGACAGTGCAGAATTGGTCACTGAGATTTCGGAATGCTA
TTGGATGGCTTTGCTTCGCGACACGCCTTTCGCCAACTTTGACAACGACA
GGGATGTGCTTGACGCTGTGAACGGTTTGAATGAAACCGAATGGATTAAA
TATGGCACCAACCCTTCCACCATTCCTCTATCTTTGACACTGGAGCAGCG
CGCACGCCTTCGTCCTGCCGTCACTGCCGGTAACATCTTCCGAGGAGTTA
CTCCCGGTGATTTGGAAGGTCCGTATCTGTCTCAATTCCTTCTCATCGGA
AACACCGGAATCAGCAAAGCGCATCAGATTCACGACGGTTTCATTAGTTA
CGGCGCTCAAAGGGTGGATCAAAAAGTGCGCGTGGCTGAACCTCGGCGTG
ACTTTATGACCACATGGGAATCCTTCATGGATGTTCAAAACGGCGCCGAC
GTGCGCGGCAGAGAAGTTTACGAGGATACGCAAGGAGACCGAGGCTTCCG
ATTCATAAGCACACCGCGTGACCTGGCTACGTACGTTCACTTTGATGCTT
TGTATCAGGCGTATTTGAACGCCTGTCTGATTTTGCTTGGAATGAGAGTT
CCATTTGACAAAGGATTGCCATTCCAACTTGATGATGACATCGACCGTCA
GCAGACCTTTGCTACATTCGGCGGGCCGCATATCTTGTCGTTGGTGACCG
AGGTAGCCACGCGCGCTCTGAAAGCTGTGCGATTCCAGAAGTTCAATGTG
CACAGACGTCTTCGTCCCGAGGCCGTGGGAGGACTTGTGGAGAAATACCG
AACAGAGGGCGGTAACCCGTTGTTCGCCGGCGTGGAACCGCTGTACAATG
CGCTGAAAGAGCAGGACTCGAACTTGTTAGGCAAGGTTGGACGTCATAAC
GAGTTACAGAACCAACTGTCAGATAACGATATTCCGCGATCACAAGATAA
GGGAGCAGGTAGAAGTTACTTGTTACCAATGGCATTCCCGGAGGGAAGCC
CCATGCATCCAAGTTACGGCGCGGGTCACGCAACGGTGGCCGGAGCGTGT
GTGACGGTTCTTAAGGCGTTCTTTGATCATGCATACGAGTTGCGTGATCC
GGAGACGAAGCAACCGTTTGCATTTGTGGCCAACGCTGATGGAAAGTCAC
TGGACAACCGCATTGGGCAGTATGGAAATAAGGCTTTGACTGTTGAGGGC
GAACTGAACAAGGTTTGCTCTAACATCTGCATCGGACGTAACTGGGCGGG
CGTGCACTACTTCACTGACTACATCGAATCGATCAGGGTTGGTGAACAGA
TTGCACTCGGAGTCTTGGAGGAACAGAAGCTGACGTTCGGCGAGAACTTT
TCAATGACAGTTCCGCTGTTCGACGGCGGGGAGATCCGCATCTAA