Ggra10719.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10719.t1
Unique Name	Ggra10719.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	682

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000888_pilon	contig	tig00000888_pilon:723795..725840 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7739.XP_002605645.1
Preferred name	F13A1
PFAMs	Transglut_C,Transglut_N,Transglut_core
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K03917,ko:K05619
KEGG Pathway	ko04610,map04610
GOs	GO:0001533,GO:0002376,GO:0002576,GO:0003674,GO:0003810,GO:0003824,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005911,GO:0005912,GO:0005913,GO:0006464,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007596,GO:0007599,GO:0008150,GO:0008152,GO:0008219,GO:0008284,GO:0008544,GO:0009611,GO:0009653,GO:0009887,GO:0009888,GO:0009913,GO:0009987,GO:0010033,GO:0010837,GO:0010838,GO:0012501,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0016740,GO:0016746,GO:0016755,GO:0018149,GO:0019221,GO:0019538,GO:0023052,GO:0030054,GO:0030141,GO:0030154,GO:0030216,GO:0030855,GO:0031091,GO:0031093,GO:0031224,GO:0031410,GO:0031424,GO:0031974,GO:0031982,GO:0031983,GO:0032501,GO:0032502,GO:0032940,GO:0034097,GO:0034774,GO:0036211,GO:0042060,GO:0042127,GO:0042221,GO:0042381,GO:0043163,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043233,GO:0043412,GO:0043588,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045087,GO:0045229,GO:0045787,GO:0046903,GO:0048513,GO:0048518,GO:0048522,GO:0048731,GO:0048856,GO:0048869,GO:0050678,GO:0050679,GO:0050789,GO:0050794,GO:0050817,GO:0050878,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0051726,GO:0060205,GO:0060429,GO:0065007,GO:0065008,GO:0070013,GO:0070161,GO:0070268,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0071840,GO:0071944,GO:0072376,GO:0072378,GO:0097708,GO:0099503,GO:0140096,GO:1901564
Evalue	1.17e-109
EggNOG OGs	2CD5G@1\|root,2QQ46@2759\|Eukaryota,38DTB@33154\|Opisthokonta,3B9AA@33208\|Metazoa,3CRPR@33213\|Bilateria,487Q2@7711\|Chordata
EC	2.3.2.13
Description	protein-glutamine gamma-glutamyltransferase activity
COG category	S
BRITE	ko00000,ko00001,ko01000,ko04516

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10719	Ggra10719	Gracilaria gracilis GNS1m male	gene	tig00000888_pilon 723795..725840 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10719.t1.stop1	Ggra10719.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000888_pilon 723795..723797 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10719.t1.CDS1	Ggra10719.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000888_pilon 723795..725840 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10719.t1.exon1	Ggra10719.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000888_pilon 723795..725840 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10719.t1.start1	Ggra10719.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000888_pilon 725838..725840 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10719.t1	Ggra10719.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000888_pilon 723795..725840 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000888_pilon:723795..725840-
coding sequence from alignment at tig00000888_pilon:723795..725840-

mRNA sequence

>Ggra10719.t1 ID=Ggra10719.t1|Name=Ggra10719.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=682bp
MTLSVADQLAAIQAAHHTADYGADPLVLRRGQPLSLSSSADPTPLQLQRV
PAHPKDRLRTPALGAALTLTPDGAPVQGWALRTASPSQQLTLHIPPTARV
GAYTLSDADSSLEFVLIFNAFAADDAVYMRDARARHEYVSNAAGVIWRGS
AEANYPAPWDYAQFDRAVFLTAVSLVDRLPAEHSADAVAVTRHLSAAVNV
QDDGGVLVGRWDGEYADGTPPTAWAGSAAIMSQYWRERTPVRYGQCWVFA
GLLTSCCRALGIPCRTVTNFASAHDTDRPYNRAVDLYFDREGELIESRSS
DSTWNFHVWSSAYMRRDDLRDDERDDDLSGWQAIDATPQEMSQGMFQMGP
SPVNAVKKGLTVDYDTDFVIGEVNADVLYYWQAPGSDEFRVMDKRTRSVG
KYISTKAVGSDRRNDITLEYKYAEGTPEERAALANRPSANIEPRDTDHNL
TFELHYDARVRMGDDVVVRVRARNTSSSEQVVRFSTLIRATRYTGTSTST
IDRRSDTVTLAPRRRTEFVVTLTQDEYQSHLVRDVQTIKFNNSAKVQQGE
QSWAAECIVRVYGDDALSLSAPRAIDMGETAVARATVSNHFRVPLTNTIV
RAEGSGVAKPVTVELGTIAPGEQQVAEIPLEGTLPGDRVVVVTVDTEELQ
DLIKSAHVKVVPVEEMNPWERFWYTLRRRFD*

spliced messenger RNA

>Ggra10719.t1 ID=Ggra10719.t1|Name=Ggra10719.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2046bp|location=Sequence derived from alignment at tig00000888_pilon:723795..725840- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCTCTCCGTCGCCGACCAGCTGGCGGCCATCCAAGCCGCGCACCA
CACGGCCGACTACGGCGCCGATCCGCTCGTGCTGCGCCGCGGGCAGCCGC
TCAGCTTGTCGTCGTCGGCCGACCCCACGCCGCTGCAGCTGCAGCGCGTG
CCGGCGCACCCCAAGGACCGGCTACGCACGCCGGCGCTTGGCGCCGCGCT
CACGCTCACGCCGGACGGCGCGCCCGTGCAAGGCTGGGCGCTACGCACCG
CGTCGCCGTCGCAGCAGCTCACGCTGCACATCCCGCCGACGGCGCGCGTG
GGCGCGTACACGCTGTCGGACGCCGACTCCTCGCTCGAGTTCGTGCTCAT
CTTCAACGCCTTCGCCGCGGACGACGCCGTGTACATGCGCGACGCGCGCG
CGCGCCACGAGTACGTCAGCAACGCGGCGGGCGTCATTTGGCGCGGCTCT
GCGGAGGCAAACTACCCCGCGCCGTGGGACTACGCGCAGTTTGACCGCGC
CGTCTTCCTCACCGCCGTCAGTCTGGTGGACCGTCTACCTGCCGAGCACA
GCGCCGACGCCGTCGCCGTCACGCGCCATTTGTCCGCCGCCGTCAACGTG
CAGGACGACGGCGGCGTGCTGGTCGGTCGCTGGGACGGCGAGTATGCCGA
CGGCACGCCGCCCACCGCGTGGGCCGGCTCTGCCGCCATTATGTCGCAGT
ACTGGCGCGAGCGCACGCCCGTGCGCTACGGGCAGTGCTGGGTGTTCGCG
GGGCTGCTCACGTCGTGCTGCCGCGCGTTGGGCATTCCGTGTCGCACCGT
CACCAACTTCGCGTCCGCACATGATACCGACCGCCCGTATAACCGCGCCG
TCGACCTGTACTTTGACCGCGAGGGCGAGCTCATCGAGAGCCGCTCCAGC
GACTCCACCTGGAACTTTCATGTGTGGAGCTCGGCCTACATGCGCCGCGA
CGATCTGCGCGACGACGAGCGCGACGACGATCTGTCCGGCTGGCAGGCCA
TCGACGCCACGCCGCAGGAGATGTCGCAGGGCATGTTTCAGATGGGGCCG
TCGCCCGTCAACGCCGTCAAGAAGGGGCTCACCGTCGACTACGACACCGA
CTTTGTCATCGGCGAGGTCAACGCCGACGTGCTCTACTACTGGCAGGCGC
CGGGCTCGGACGAGTTTCGCGTCATGGACAAGCGCACCCGCAGCGTGGGC
AAGTACATCAGCACCAAGGCCGTCGGCTCCGACCGTCGCAACGACATCAC
CCTCGAGTACAAGTACGCCGAGGGCACGCCGGAGGAGCGCGCCGCCCTGG
CCAACCGACCGTCCGCCAACATCGAGCCGCGCGACACCGACCACAACCTC
ACCTTTGAGCTGCACTACGACGCGCGCGTGAGGATGGGCGACGATGTGGT
GGTGCGCGTCCGGGCGAGGAACACCTCGTCCTCCGAGCAGGTTGTGCGCT
TCTCCACCCTCATCCGCGCCACTCGTTACACCGGCACGTCCACGTCCACC
ATCGATAGAAGGTCCGACACCGTCACGCTCGCGCCGCGGAGGAGAACCGA
GTTTGTCGTCACCCTGACGCAGGACGAGTATCAGAGCCATCTGGTGAGGG
ATGTGCAAACCATCAAGTTCAACAACAGCGCCAAGGTGCAGCAGGGCGAG
CAGTCGTGGGCCGCCGAATGCATCGTTCGCGTGTACGGAGACGATGCGCT
GTCGCTGTCGGCGCCAAGGGCCATCGACATGGGCGAGACCGCGGTGGCCA
GGGCCACCGTGAGCAACCACTTCCGCGTGCCGCTCACCAACACCATCGTG
CGCGCGGAGGGAAGTGGTGTGGCGAAGCCCGTCACCGTGGAGCTGGGCAC
CATCGCGCCTGGAGAGCAGCAAGTGGCCGAGATCCCGTTGGAGGGCACGC
TGCCTGGCGATCGTGTTGTAGTCGTGACGGTGGACACCGAGGAGTTGCAG
GACCTGATCAAGAGCGCGCACGTGAAGGTTGTGCCCGTGGAAGAGATGAA
TCCATGGGAGCGGTTCTGGTACACTCTGCGACGTAGATTCGATTAA

protein sequence of Ggra10719.t1

>Ggra10719.t1 ID=Ggra10719.t1|Name=Ggra10719.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=682bp
MTLSVADQLAAIQAAHHTADYGADPLVLRRGQPLSLSSSADPTPLQLQRV
PAHPKDRLRTPALGAALTLTPDGAPVQGWALRTASPSQQLTLHIPPTARV
GAYTLSDADSSLEFVLIFNAFAADDAVYMRDARARHEYVSNAAGVIWRGS
AEANYPAPWDYAQFDRAVFLTAVSLVDRLPAEHSADAVAVTRHLSAAVNV
QDDGGVLVGRWDGEYADGTPPTAWAGSAAIMSQYWRERTPVRYGQCWVFA
GLLTSCCRALGIPCRTVTNFASAHDTDRPYNRAVDLYFDREGELIESRSS
DSTWNFHVWSSAYMRRDDLRDDERDDDLSGWQAIDATPQEMSQGMFQMGP
SPVNAVKKGLTVDYDTDFVIGEVNADVLYYWQAPGSDEFRVMDKRTRSVG
KYISTKAVGSDRRNDITLEYKYAEGTPEERAALANRPSANIEPRDTDHNL
TFELHYDARVRMGDDVVVRVRARNTSSSEQVVRFSTLIRATRYTGTSTST
IDRRSDTVTLAPRRRTEFVVTLTQDEYQSHLVRDVQTIKFNNSAKVQQGE
QSWAAECIVRVYGDDALSLSAPRAIDMGETAVARATVSNHFRVPLTNTIV
RAEGSGVAKPVTVELGTIAPGEQQVAEIPLEGTLPGDRVVVVTVDTEELQ
DLIKSAHVKVVPVEEMNPWERFWYTLRRRFD*

mRNA from alignment at tig00000888_pilon:723795..725840-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10719.t1 ID=Ggra10719.t1|Name=Ggra10719.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2046bp|location=Sequence derived from alignment at tig00000888_pilon:723795..725840- (Gracilaria gracilis GNS1m male)
ATGACGCTCTCCGTCGCCGACCAGCTGGCGGCCATCCAAGCCGCGCACCA
CACGGCCGACTACGGCGCCGATCCGCTCGTGCTGCGCCGCGGGCAGCCGC
TCAGCTTGTCGTCGTCGGCCGACCCCACGCCGCTGCAGCTGCAGCGCGTG
CCGGCGCACCCCAAGGACCGGCTACGCACGCCGGCGCTTGGCGCCGCGCT
CACGCTCACGCCGGACGGCGCGCCCGTGCAAGGCTGGGCGCTACGCACCG
CGTCGCCGTCGCAGCAGCTCACGCTGCACATCCCGCCGACGGCGCGCGTG
GGCGCGTACACGCTGTCGGACGCCGACTCCTCGCTCGAGTTCGTGCTCAT
CTTCAACGCCTTCGCCGCGGACGACGCCGTGTACATGCGCGACGCGCGCG
CGCGCCACGAGTACGTCAGCAACGCGGCGGGCGTCATTTGGCGCGGCTCT
GCGGAGGCAAACTACCCCGCGCCGTGGGACTACGCGCAGTTTGACCGCGC
CGTCTTCCTCACCGCCGTCAGTCTGGTGGACCGTCTACCTGCCGAGCACA
GCGCCGACGCCGTCGCCGTCACGCGCCATTTGTCCGCCGCCGTCAACGTG
CAGGACGACGGCGGCGTGCTGGTCGGTCGCTGGGACGGCGAGTATGCCGA
CGGCACGCCGCCCACCGCGTGGGCCGGCTCTGCCGCCATTATGTCGCAGT
ACTGGCGCGAGCGCACGCCCGTGCGCTACGGGCAGTGCTGGGTGTTCGCG
GGGCTGCTCACGTCGTGCTGCCGCGCGTTGGGCATTCCGTGTCGCACCGT
CACCAACTTCGCGTCCGCACATGATACCGACCGCCCGTATAACCGCGCCG
TCGACCTGTACTTTGACCGCGAGGGCGAGCTCATCGAGAGCCGCTCCAGC
GACTCCACCTGGAACTTTCATGTGTGGAGCTCGGCCTACATGCGCCGCGA
CGATCTGCGCGACGACGAGCGCGACGACGATCTGTCCGGCTGGCAGGCCA
TCGACGCCACGCCGCAGGAGATGTCGCAGGGCATGTTTCAGATGGGGCCG
TCGCCCGTCAACGCCGTCAAGAAGGGGCTCACCGTCGACTACGACACCGA
CTTTGTCATCGGCGAGGTCAACGCCGACGTGCTCTACTACTGGCAGGCGC
CGGGCTCGGACGAGTTTCGCGTCATGGACAAGCGCACCCGCAGCGTGGGC
AAGTACATCAGCACCAAGGCCGTCGGCTCCGACCGTCGCAACGACATCAC
CCTCGAGTACAAGTACGCCGAGGGCACGCCGGAGGAGCGCGCCGCCCTGG
CCAACCGACCGTCCGCCAACATCGAGCCGCGCGACACCGACCACAACCTC
ACCTTTGAGCTGCACTACGACGCGCGCGTGAGGATGGGCGACGATGTGGT
GGTGCGCGTCCGGGCGAGGAACACCTCGTCCTCCGAGCAGGTTGTGCGCT
TCTCCACCCTCATCCGCGCCACTCGTTACACCGGCACGTCCACGTCCACC
ATCGATAGAAGGTCCGACACCGTCACGCTCGCGCCGCGGAGGAGAACCGA
GTTTGTCGTCACCCTGACGCAGGACGAGTATCAGAGCCATCTGGTGAGGG
ATGTGCAAACCATCAAGTTCAACAACAGCGCCAAGGTGCAGCAGGGCGAG
CAGTCGTGGGCCGCCGAATGCATCGTTCGCGTGTACGGAGACGATGCGCT
GTCGCTGTCGGCGCCAAGGGCCATCGACATGGGCGAGACCGCGGTGGCCA
GGGCCACCGTGAGCAACCACTTCCGCGTGCCGCTCACCAACACCATCGTG
CGCGCGGAGGGAAGTGGTGTGGCGAAGCCCGTCACCGTGGAGCTGGGCAC
CATCGCGCCTGGAGAGCAGCAAGTGGCCGAGATCCCGTTGGAGGGCACGC
TGCCTGGCGATCGTGTTGTAGTCGTGACGGTGGACACCGAGGAGTTGCAG
GACCTGATCAAGAGCGCGCACGTGAAGGTTGTGCCCGTGGAAGAGATGAA
TCCATGGGAGCGGTTCTGGTACACTCTGCGACGTAGATTCGATTAA

Coding sequence (CDS) from alignment at tig00000888_pilon:723795..725840-

>Ggra10719.t1 ID=Ggra10719.t1|Name=Ggra10719.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2046bp|location=Sequence derived from alignment at tig00000888_pilon:723795..725840- (Gracilaria gracilis GNS1m male)
ATGACGCTCTCCGTCGCCGACCAGCTGGCGGCCATCCAAGCCGCGCACCA
CACGGCCGACTACGGCGCCGATCCGCTCGTGCTGCGCCGCGGGCAGCCGC
TCAGCTTGTCGTCGTCGGCCGACCCCACGCCGCTGCAGCTGCAGCGCGTG
CCGGCGCACCCCAAGGACCGGCTACGCACGCCGGCGCTTGGCGCCGCGCT
CACGCTCACGCCGGACGGCGCGCCCGTGCAAGGCTGGGCGCTACGCACCG
CGTCGCCGTCGCAGCAGCTCACGCTGCACATCCCGCCGACGGCGCGCGTG
GGCGCGTACACGCTGTCGGACGCCGACTCCTCGCTCGAGTTCGTGCTCAT
CTTCAACGCCTTCGCCGCGGACGACGCCGTGTACATGCGCGACGCGCGCG
CGCGCCACGAGTACGTCAGCAACGCGGCGGGCGTCATTTGGCGCGGCTCT
GCGGAGGCAAACTACCCCGCGCCGTGGGACTACGCGCAGTTTGACCGCGC
CGTCTTCCTCACCGCCGTCAGTCTGGTGGACCGTCTACCTGCCGAGCACA
GCGCCGACGCCGTCGCCGTCACGCGCCATTTGTCCGCCGCCGTCAACGTG
CAGGACGACGGCGGCGTGCTGGTCGGTCGCTGGGACGGCGAGTATGCCGA
CGGCACGCCGCCCACCGCGTGGGCCGGCTCTGCCGCCATTATGTCGCAGT
ACTGGCGCGAGCGCACGCCCGTGCGCTACGGGCAGTGCTGGGTGTTCGCG
GGGCTGCTCACGTCGTGCTGCCGCGCGTTGGGCATTCCGTGTCGCACCGT
CACCAACTTCGCGTCCGCACATGATACCGACCGCCCGTATAACCGCGCCG
TCGACCTGTACTTTGACCGCGAGGGCGAGCTCATCGAGAGCCGCTCCAGC
GACTCCACCTGGAACTTTCATGTGTGGAGCTCGGCCTACATGCGCCGCGA
CGATCTGCGCGACGACGAGCGCGACGACGATCTGTCCGGCTGGCAGGCCA
TCGACGCCACGCCGCAGGAGATGTCGCAGGGCATGTTTCAGATGGGGCCG
TCGCCCGTCAACGCCGTCAAGAAGGGGCTCACCGTCGACTACGACACCGA
CTTTGTCATCGGCGAGGTCAACGCCGACGTGCTCTACTACTGGCAGGCGC
CGGGCTCGGACGAGTTTCGCGTCATGGACAAGCGCACCCGCAGCGTGGGC
AAGTACATCAGCACCAAGGCCGTCGGCTCCGACCGTCGCAACGACATCAC
CCTCGAGTACAAGTACGCCGAGGGCACGCCGGAGGAGCGCGCCGCCCTGG
CCAACCGACCGTCCGCCAACATCGAGCCGCGCGACACCGACCACAACCTC
ACCTTTGAGCTGCACTACGACGCGCGCGTGAGGATGGGCGACGATGTGGT
GGTGCGCGTCCGGGCGAGGAACACCTCGTCCTCCGAGCAGGTTGTGCGCT
TCTCCACCCTCATCCGCGCCACTCGTTACACCGGCACGTCCACGTCCACC
ATCGATAGAAGGTCCGACACCGTCACGCTCGCGCCGCGGAGGAGAACCGA
GTTTGTCGTCACCCTGACGCAGGACGAGTATCAGAGCCATCTGGTGAGGG
ATGTGCAAACCATCAAGTTCAACAACAGCGCCAAGGTGCAGCAGGGCGAG
CAGTCGTGGGCCGCCGAATGCATCGTTCGCGTGTACGGAGACGATGCGCT
GTCGCTGTCGGCGCCAAGGGCCATCGACATGGGCGAGACCGCGGTGGCCA
GGGCCACCGTGAGCAACCACTTCCGCGTGCCGCTCACCAACACCATCGTG
CGCGCGGAGGGAAGTGGTGTGGCGAAGCCCGTCACCGTGGAGCTGGGCAC
CATCGCGCCTGGAGAGCAGCAAGTGGCCGAGATCCCGTTGGAGGGCACGC
TGCCTGGCGATCGTGTTGTAGTCGTGACGGTGGACACCGAGGAGTTGCAG
GACCTGATCAAGAGCGCGCACGTGAAGGTTGTGCCCGTGGAAGAGATGAA
TCCATGGGAGCGGTTCTGGTACACTCTGCGACGTAGATTCGATTAA