Ggra9942.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9942.t1
Unique NameGgra9942.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length314
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:260208..261149 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9942Ggra9942Gracilaria gracilis GNS1m malegenetig00000887_pilon 260208..261149 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9942.t1.stop1Ggra9942.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000887_pilon 260208..260210 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9942.t1.CDS1Ggra9942.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000887_pilon 260208..261149 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9942.t1.exon1Ggra9942.t1.exon1Gracilaria gracilis GNS1m maleexontig00000887_pilon 260208..261149 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9942.t1.start1Ggra9942.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000887_pilon 261147..261149 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9942.t1Ggra9942.t1Gracilaria gracilis GNS1m malepolypeptidetig00000887_pilon 260208..261149 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9942.t1 ID=Ggra9942.t1|Name=Ggra9942.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=314bp
MIEEQECISFLSFDHGGTLQWYVTVPHNVADDFIFEKVRMFLASVSMSSA
VFKPYDTDPFVDSEPDSTNAMSRATYINGADNTMMVAKQIEQGSNEWHGF
VVRPSSVVSEQIIISMVDAFEEAAEYLVGNLADKRMKFRGLSENIRRLYS
SDNWWRKKSLFIHLRDSLVSLGKSHCRLGLRCLEREESGLQARLPGTTTL
SKFRSTLLRWYSCVPSIWVTCLTRKAMYYDNMTIGHSETLLWYYVSVFSI
GNRERRHYYVEAAIDETVRLWFRHRDWVTIIQFTANKSFPSAVPRSVRHA
ADELMEELSESYR*
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spliced messenger RNA

>Ggra9942.t1 ID=Ggra9942.t1|Name=Ggra9942.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=942bp|location=Sequence derived from alignment at tig00000887_pilon:260208..261149- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGAAGAACAGGAATGCATATCATTTCTCTCATTTGATCATGGCGG
CACGTTGCAGTGGTACGTTACTGTCCCGCATAATGTTGCGGACGACTTCA
TCTTTGAAAAAGTGCGCATGTTTCTTGCCTCTGTTTCCATGTCTTCGGCC
GTTTTCAAGCCATATGACACGGATCCTTTCGTAGATTCTGAGCCCGACAG
TACTAATGCAATGTCTAGAGCTACCTACATCAATGGCGCGGACAACACAA
TGATGGTTGCTAAGCAGATCGAACAGGGCTCGAACGAATGGCACGGTTTC
GTTGTCAGGCCCTCATCTGTTGTCAGCGAGCAAATAATTATATCAATGGT
TGACGCATTCGAGGAAGCTGCGGAGTACCTCGTGGGAAATCTTGCCGACA
AACGTATGAAGTTCCGGGGACTCTCCGAGAACATCCGAAGACTATACAGT
AGTGACAACTGGTGGAGAAAGAAGTCTCTCTTTATTCATTTACGGGATAG
TCTGGTTAGCTTAGGAAAGAGTCATTGCCGTTTGGGACTCAGGTGTTTAG
AAAGGGAAGAATCAGGCTTGCAAGCTCGCCTTCCAGGCACAACAACCCTG
TCGAAGTTCAGAAGCACATTGCTTCGATGGTACTCCTGTGTTCCGTCCAT
TTGGGTTACTTGTTTGACACGCAAAGCAATGTACTATGACAATATGACTA
TTGGCCACTCAGAAACACTGTTGTGGTACTACGTTTCTGTCTTTTCCATC
GGAAACCGCGAGCGAAGACACTACTACGTCGAGGCAGCCATAGATGAAAC
TGTTCGACTATGGTTTAGACACCGTGATTGGGTAACAATAATACAGTTTA
CAGCAAACAAGTCATTTCCATCGGCTGTGCCGAGGTCGGTGCGCCATGCT
GCTGATGAACTAATGGAAGAACTATCCGAAAGCTACAGATAG
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protein sequence of Ggra9942.t1

>Ggra9942.t1 ID=Ggra9942.t1|Name=Ggra9942.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=314bp
MIEEQECISFLSFDHGGTLQWYVTVPHNVADDFIFEKVRMFLASVSMSSA
VFKPYDTDPFVDSEPDSTNAMSRATYINGADNTMMVAKQIEQGSNEWHGF
VVRPSSVVSEQIIISMVDAFEEAAEYLVGNLADKRMKFRGLSENIRRLYS
SDNWWRKKSLFIHLRDSLVSLGKSHCRLGLRCLEREESGLQARLPGTTTL
SKFRSTLLRWYSCVPSIWVTCLTRKAMYYDNMTIGHSETLLWYYVSVFSI
GNRERRHYYVEAAIDETVRLWFRHRDWVTIIQFTANKSFPSAVPRSVRHA
ADELMEELSESYR*
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mRNA from alignment at tig00000887_pilon:260208..261149-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9942.t1 ID=Ggra9942.t1|Name=Ggra9942.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=942bp|location=Sequence derived from alignment at tig00000887_pilon:260208..261149- (Gracilaria gracilis GNS1m male)
ATGATCGAAGAACAGGAATGCATATCATTTCTCTCATTTGATCATGGCGG
CACGTTGCAGTGGTACGTTACTGTCCCGCATAATGTTGCGGACGACTTCA
TCTTTGAAAAAGTGCGCATGTTTCTTGCCTCTGTTTCCATGTCTTCGGCC
GTTTTCAAGCCATATGACACGGATCCTTTCGTAGATTCTGAGCCCGACAG
TACTAATGCAATGTCTAGAGCTACCTACATCAATGGCGCGGACAACACAA
TGATGGTTGCTAAGCAGATCGAACAGGGCTCGAACGAATGGCACGGTTTC
GTTGTCAGGCCCTCATCTGTTGTCAGCGAGCAAATAATTATATCAATGGT
TGACGCATTCGAGGAAGCTGCGGAGTACCTCGTGGGAAATCTTGCCGACA
AACGTATGAAGTTCCGGGGACTCTCCGAGAACATCCGAAGACTATACAGT
AGTGACAACTGGTGGAGAAAGAAGTCTCTCTTTATTCATTTACGGGATAG
TCTGGTTAGCTTAGGAAAGAGTCATTGCCGTTTGGGACTCAGGTGTTTAG
AAAGGGAAGAATCAGGCTTGCAAGCTCGCCTTCCAGGCACAACAACCCTG
TCGAAGTTCAGAAGCACATTGCTTCGATGGTACTCCTGTGTTCCGTCCAT
TTGGGTTACTTGTTTGACACGCAAAGCAATGTACTATGACAATATGACTA
TTGGCCACTCAGAAACACTGTTGTGGTACTACGTTTCTGTCTTTTCCATC
GGAAACCGCGAGCGAAGACACTACTACGTCGAGGCAGCCATAGATGAAAC
TGTTCGACTATGGTTTAGACACCGTGATTGGGTAACAATAATACAGTTTA
CAGCAAACAAGTCATTTCCATCGGCTGTGCCGAGGTCGGTGCGCCATGCT
GCTGATGAACTAATGGAAGAACTATCCGAAAGCTACAGATAG
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Coding sequence (CDS) from alignment at tig00000887_pilon:260208..261149-

>Ggra9942.t1 ID=Ggra9942.t1|Name=Ggra9942.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=942bp|location=Sequence derived from alignment at tig00000887_pilon:260208..261149- (Gracilaria gracilis GNS1m male)
ATGATCGAAGAACAGGAATGCATATCATTTCTCTCATTTGATCATGGCGG
CACGTTGCAGTGGTACGTTACTGTCCCGCATAATGTTGCGGACGACTTCA
TCTTTGAAAAAGTGCGCATGTTTCTTGCCTCTGTTTCCATGTCTTCGGCC
GTTTTCAAGCCATATGACACGGATCCTTTCGTAGATTCTGAGCCCGACAG
TACTAATGCAATGTCTAGAGCTACCTACATCAATGGCGCGGACAACACAA
TGATGGTTGCTAAGCAGATCGAACAGGGCTCGAACGAATGGCACGGTTTC
GTTGTCAGGCCCTCATCTGTTGTCAGCGAGCAAATAATTATATCAATGGT
TGACGCATTCGAGGAAGCTGCGGAGTACCTCGTGGGAAATCTTGCCGACA
AACGTATGAAGTTCCGGGGACTCTCCGAGAACATCCGAAGACTATACAGT
AGTGACAACTGGTGGAGAAAGAAGTCTCTCTTTATTCATTTACGGGATAG
TCTGGTTAGCTTAGGAAAGAGTCATTGCCGTTTGGGACTCAGGTGTTTAG
AAAGGGAAGAATCAGGCTTGCAAGCTCGCCTTCCAGGCACAACAACCCTG
TCGAAGTTCAGAAGCACATTGCTTCGATGGTACTCCTGTGTTCCGTCCAT
TTGGGTTACTTGTTTGACACGCAAAGCAATGTACTATGACAATATGACTA
TTGGCCACTCAGAAACACTGTTGTGGTACTACGTTTCTGTCTTTTCCATC
GGAAACCGCGAGCGAAGACACTACTACGTCGAGGCAGCCATAGATGAAAC
TGTTCGACTATGGTTTAGACACCGTGATTGGGTAACAATAATACAGTTTA
CAGCAAACAAGTCATTTCCATCGGCTGTGCCGAGGTCGGTGCGCCATGCT
GCTGATGAACTAATGGAAGAACTATCCGAAAGCTACAGATAG
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