Ggra9919.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9919.t1
Unique Name	Ggra9919.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	594

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000887_pilon	contig	tig00000887_pilon:93748..95529 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1173028.ANKO01000247_gene4003
PFAMs	Na_H_Exchanger,TrkA_C,TrkA_N
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K03455
KEGG TC	2.A.37
Evalue	2.34e-67
EggNOG OGs	COG0475@1\|root,COG1226@1\|root,COG0475@2\|Bacteria,COG1226@2\|Bacteria,1G014@1117\|Cyanobacteria,1H97H@1150\|Oscillatoriales
Description	Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family
COG category	P
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9919	Ggra9919	Gracilaria gracilis GNS1m male	gene	tig00000887_pilon 93748..95529 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9919.t1.start1	Ggra9919.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000887_pilon 93748..93750 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9919.t1.CDS1	Ggra9919.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000887_pilon 93748..95529 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9919.t1.exon1	Ggra9919.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000887_pilon 93748..95529 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9919.t1.stop1	Ggra9919.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000887_pilon 95527..95529 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9919.t1	Ggra9919.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000887_pilon 93748..95529 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000887_pilon:93748..95529+
coding sequence from alignment at tig00000887_pilon:93748..95529+

mRNA sequence

>Ggra9919.t1 ID=Ggra9919.t1|Name=Ggra9919.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=594bp
MSRSCRGLLLAAGALPLLLQLLLLLLLLLVDRAVARPSDAVAAAPPPPPP
VAQPLQPAAHVHSRLFEHFDVDNDGKLNEKEVAALLKLLTKKKKDDDSAA
QSDKPPGTHDITIDGETLSVGQGEFDLLFKQLSNLKQTKDPSKDPRMTLQ
EDIIFVKDLVIVFLAATVGGVFATNFRQPPLIGFLLGGMTVGPGGLAIVT
ELVEVETLASLGIAFLLFCLGVEFSITELQGVKRVVVAGGMSSMVGIVLG
TGALSLILSLVKSVPEAVALGLAVSLSSTAVVLQCLSASPSHPSVHSPHG
SHSDSPHPDVGDEKHSHHVSSPPDTPSLPMGKNSVFSFDAPRSRKTMLGL
LVFQDVMIGLILALLPTLQGSLAQFVEEFIRAILRLGCFVMLSLILAEFI
LPTLSERLDAAKSQEVFTIGCVVFCLAMSYLSEEMGLAIELGAFAAGMML
SESRHKNRVESSVESIRSVFSAIFFISVGMMIHWRYFYQNFAKMAVLLVV
ILVVKTFVMGAVICVLGGLPLRTSMACGAAIAQAGEFTFVVASKGQALLL
FSASEARMINGATALSMLATPYIIRYARKWTASGLQRSDDPSV*

spliced messenger RNA

>Ggra9919.t1 ID=Ggra9919.t1|Name=Ggra9919.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1782bp|location=Sequence derived from alignment at tig00000887_pilon:93748..95529+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGCTCGTGCCGTGGgttgctgctcgccgctggcgcgctgccact
gctgctgcagctgcttctgctgttgctgctgctgctCGTTGACCGCGCCG
TCGcgcgcccgtccgacgccgtcgccgccgcgccgcccccacccccgccc
GTCGCGCAGCCGTTGCAGCCGGCCGCGCACGTGCACTCGCGCCTGTTCGA
GCACTTTGACGTCGATAACGACGGAAAGCTCAACGAGAAGGAGGTGGCCG
CGCTGCTCAAGCTGCTCACCAAAAAGAAAAAGGACGACGACTCCGCCGCG
CAGTCCGACAAGCCGCCCGGCACCCACGACATCACCATCGACGGCGAGAC
GCTCTCCGTGGGGCAGGGCGAGTTTGATCTGCTCTTCAAGCAGCTGTCCA
ACCTCAAGCAGACCAAGGATCCCTCCAAGGACCCGCGCATGACGCTGCAG
GAGGACATCATCTTTGTCAAGGACCTCGTCATCGTCTTTCTGGCCGCCAC
TGTTGGCGGTGTCTTTGCCACCAACTTTAGACAGCCGCCGCTCATCGGCT
TTCTGCTGGGCGGCATGACCGTCGGCCCGGGCGGCTTGGCCATCGTCACC
GAGCTTGTCGAGGTCGAGACGCTCGCCTCGCTGGGCATTGCCTTCTTGCT
CTTCTGCCTGGGCGTCGAGTTCTCCATCACCGAGCTGCAGGGCGTCAAGC
GCGTCGTTGTCGCGGGCGGAATGTCCAGCATGGTCGGTATCGTGCTTGGA
ACCGGTGCGCTCTCGCTCATTTTGTCGCTCGTAAAGTCGGTGCCGGAGGC
CGTGGCGCTGGGCTTGGCCGTCTCGCTCTCCTCCACTGCCGTGGTGTTGC
AGTGCTTGTCTGCGTCGCCGTCGCACCCCTCTGTACATTCTCCGCATGGC
TCGCACTCGGATTCACCGCATCCTGACGTTGGCGATGAGAAACACTCGCA
TCATGTTTCCTCCCCTCCGGATACGCCGTCGTTGCCCATGGGCAAGAATT
CCGTGTTCAGCTTTGATGCGCCGCGGAGCAGGAAGACAATGCTTGGCTTG
CTTGTGTTCCAGGACGTTATGATCGGCCTCATTCTTGCGTTGCTGCCCAC
GTTGCAAGGGTCGTTGGCGCAGTTTGTGGAAGAGTTCATCAGGGCCATTT
TGCGCTTGGGTTGTTTTGTTATGCTCAGTCTCATCCTGGCTGAATTCATC
TTGCCCACTCTTTCTGAGCGCCTCGATGCCGCCAAGAGCCAGGAAGTGTT
TACCATTGGATGTGTCGTGTTTTGTTTGGCCATGTCTTACCTTTCCGAAG
AAATGGGACTGGCCATTGAACTAGGCGCGTTTGCGGCTGGCATGATGTTG
TCCGAGTCTCGACATAAGAATCGTGTCGAGAGCAGCGTGGAGAGCATTCG
CAGCGTGTTCTCTGCAATTTTCTTCATCTCGGTGGGAATGATGATCCACT
GGAGATACTTTTATCAGAACTTTGCCAAGATGGCGGTGTTACTCGTTGTC
ATCCTGGTGGTGAAGACTTTTGTAATGGGCGCTGTCATCTGCGTCCTGGG
GGGATTACCATTGCGAACGTCCATGGCGTGTGGCGCAGCAATCGCACAAG
CGGGAGAGTTCACTTTTGTTGTGGCTTCCAAAGGACAGGCGTTGTTGCTT
TTCTCCGCATCAGAAGCTAGAATGATCAATGGCGCAACCGCTCTTTCGAT
GCTTGCAACGCCTTATATCATTCGTTATGCACGGAAATGGACAGCAAGCG
GGCTTCAAAGATCGGATGACCCAAGCGTGTGA

protein sequence of Ggra9919.t1

>Ggra9919.t1 ID=Ggra9919.t1|Name=Ggra9919.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=594bp
MSRSCRGLLLAAGALPLLLQLLLLLLLLLVDRAVARPSDAVAAAPPPPPP
VAQPLQPAAHVHSRLFEHFDVDNDGKLNEKEVAALLKLLTKKKKDDDSAA
QSDKPPGTHDITIDGETLSVGQGEFDLLFKQLSNLKQTKDPSKDPRMTLQ
EDIIFVKDLVIVFLAATVGGVFATNFRQPPLIGFLLGGMTVGPGGLAIVT
ELVEVETLASLGIAFLLFCLGVEFSITELQGVKRVVVAGGMSSMVGIVLG
TGALSLILSLVKSVPEAVALGLAVSLSSTAVVLQCLSASPSHPSVHSPHG
SHSDSPHPDVGDEKHSHHVSSPPDTPSLPMGKNSVFSFDAPRSRKTMLGL
LVFQDVMIGLILALLPTLQGSLAQFVEEFIRAILRLGCFVMLSLILAEFI
LPTLSERLDAAKSQEVFTIGCVVFCLAMSYLSEEMGLAIELGAFAAGMML
SESRHKNRVESSVESIRSVFSAIFFISVGMMIHWRYFYQNFAKMAVLLVV
ILVVKTFVMGAVICVLGGLPLRTSMACGAAIAQAGEFTFVVASKGQALLL
FSASEARMINGATALSMLATPYIIRYARKWTASGLQRSDDPSV*

mRNA from alignment at tig00000887_pilon:93748..95529+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9919.t1 ID=Ggra9919.t1|Name=Ggra9919.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1782bp|location=Sequence derived from alignment at tig00000887_pilon:93748..95529+ (Gracilaria gracilis GNS1m male)
ATGTCGCGCTCGTGCCGTGGgttgctgctcgccgctggcgcgctgccact
gctgctgcagctgcttctgctgttgctgctgctgctCGTTGACCGCGCCG
TCGcgcgcccgtccgacgccgtcgccgccgcgccgcccccacccccgccc
GTCGCGCAGCCGTTGCAGCCGGCCGCGCACGTGCACTCGCGCCTGTTCGA
GCACTTTGACGTCGATAACGACGGAAAGCTCAACGAGAAGGAGGTGGCCG
CGCTGCTCAAGCTGCTCACCAAAAAGAAAAAGGACGACGACTCCGCCGCG
CAGTCCGACAAGCCGCCCGGCACCCACGACATCACCATCGACGGCGAGAC
GCTCTCCGTGGGGCAGGGCGAGTTTGATCTGCTCTTCAAGCAGCTGTCCA
ACCTCAAGCAGACCAAGGATCCCTCCAAGGACCCGCGCATGACGCTGCAG
GAGGACATCATCTTTGTCAAGGACCTCGTCATCGTCTTTCTGGCCGCCAC
TGTTGGCGGTGTCTTTGCCACCAACTTTAGACAGCCGCCGCTCATCGGCT
TTCTGCTGGGCGGCATGACCGTCGGCCCGGGCGGCTTGGCCATCGTCACC
GAGCTTGTCGAGGTCGAGACGCTCGCCTCGCTGGGCATTGCCTTCTTGCT
CTTCTGCCTGGGCGTCGAGTTCTCCATCACCGAGCTGCAGGGCGTCAAGC
GCGTCGTTGTCGCGGGCGGAATGTCCAGCATGGTCGGTATCGTGCTTGGA
ACCGGTGCGCTCTCGCTCATTTTGTCGCTCGTAAAGTCGGTGCCGGAGGC
CGTGGCGCTGGGCTTGGCCGTCTCGCTCTCCTCCACTGCCGTGGTGTTGC
AGTGCTTGTCTGCGTCGCCGTCGCACCCCTCTGTACATTCTCCGCATGGC
TCGCACTCGGATTCACCGCATCCTGACGTTGGCGATGAGAAACACTCGCA
TCATGTTTCCTCCCCTCCGGATACGCCGTCGTTGCCCATGGGCAAGAATT
CCGTGTTCAGCTTTGATGCGCCGCGGAGCAGGAAGACAATGCTTGGCTTG
CTTGTGTTCCAGGACGTTATGATCGGCCTCATTCTTGCGTTGCTGCCCAC
GTTGCAAGGGTCGTTGGCGCAGTTTGTGGAAGAGTTCATCAGGGCCATTT
TGCGCTTGGGTTGTTTTGTTATGCTCAGTCTCATCCTGGCTGAATTCATC
TTGCCCACTCTTTCTGAGCGCCTCGATGCCGCCAAGAGCCAGGAAGTGTT
TACCATTGGATGTGTCGTGTTTTGTTTGGCCATGTCTTACCTTTCCGAAG
AAATGGGACTGGCCATTGAACTAGGCGCGTTTGCGGCTGGCATGATGTTG
TCCGAGTCTCGACATAAGAATCGTGTCGAGAGCAGCGTGGAGAGCATTCG
CAGCGTGTTCTCTGCAATTTTCTTCATCTCGGTGGGAATGATGATCCACT
GGAGATACTTTTATCAGAACTTTGCCAAGATGGCGGTGTTACTCGTTGTC
ATCCTGGTGGTGAAGACTTTTGTAATGGGCGCTGTCATCTGCGTCCTGGG
GGGATTACCATTGCGAACGTCCATGGCGTGTGGCGCAGCAATCGCACAAG
CGGGAGAGTTCACTTTTGTTGTGGCTTCCAAAGGACAGGCGTTGTTGCTT
TTCTCCGCATCAGAAGCTAGAATGATCAATGGCGCAACCGCTCTTTCGAT
GCTTGCAACGCCTTATATCATTCGTTATGCACGGAAATGGACAGCAAGCG
GGCTTCAAAGATCGGATGACCCAAGCGTGTGA

Coding sequence (CDS) from alignment at tig00000887_pilon:93748..95529+

>Ggra9919.t1 ID=Ggra9919.t1|Name=Ggra9919.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1782bp|location=Sequence derived from alignment at tig00000887_pilon:93748..95529+ (Gracilaria gracilis GNS1m male)
ATGTCGCGCTCGTGCCGTGGgttgctgctcgccgctggcgcgctgccact
gctgctgcagctgcttctgctgttgctgctgctgctCGTTGACCGCGCCG
TCGcgcgcccgtccgacgccgtcgccgccgcgccgcccccacccccgccc
GTCGCGCAGCCGTTGCAGCCGGCCGCGCACGTGCACTCGCGCCTGTTCGA
GCACTTTGACGTCGATAACGACGGAAAGCTCAACGAGAAGGAGGTGGCCG
CGCTGCTCAAGCTGCTCACCAAAAAGAAAAAGGACGACGACTCCGCCGCG
CAGTCCGACAAGCCGCCCGGCACCCACGACATCACCATCGACGGCGAGAC
GCTCTCCGTGGGGCAGGGCGAGTTTGATCTGCTCTTCAAGCAGCTGTCCA
ACCTCAAGCAGACCAAGGATCCCTCCAAGGACCCGCGCATGACGCTGCAG
GAGGACATCATCTTTGTCAAGGACCTCGTCATCGTCTTTCTGGCCGCCAC
TGTTGGCGGTGTCTTTGCCACCAACTTTAGACAGCCGCCGCTCATCGGCT
TTCTGCTGGGCGGCATGACCGTCGGCCCGGGCGGCTTGGCCATCGTCACC
GAGCTTGTCGAGGTCGAGACGCTCGCCTCGCTGGGCATTGCCTTCTTGCT
CTTCTGCCTGGGCGTCGAGTTCTCCATCACCGAGCTGCAGGGCGTCAAGC
GCGTCGTTGTCGCGGGCGGAATGTCCAGCATGGTCGGTATCGTGCTTGGA
ACCGGTGCGCTCTCGCTCATTTTGTCGCTCGTAAAGTCGGTGCCGGAGGC
CGTGGCGCTGGGCTTGGCCGTCTCGCTCTCCTCCACTGCCGTGGTGTTGC
AGTGCTTGTCTGCGTCGCCGTCGCACCCCTCTGTACATTCTCCGCATGGC
TCGCACTCGGATTCACCGCATCCTGACGTTGGCGATGAGAAACACTCGCA
TCATGTTTCCTCCCCTCCGGATACGCCGTCGTTGCCCATGGGCAAGAATT
CCGTGTTCAGCTTTGATGCGCCGCGGAGCAGGAAGACAATGCTTGGCTTG
CTTGTGTTCCAGGACGTTATGATCGGCCTCATTCTTGCGTTGCTGCCCAC
GTTGCAAGGGTCGTTGGCGCAGTTTGTGGAAGAGTTCATCAGGGCCATTT
TGCGCTTGGGTTGTTTTGTTATGCTCAGTCTCATCCTGGCTGAATTCATC
TTGCCCACTCTTTCTGAGCGCCTCGATGCCGCCAAGAGCCAGGAAGTGTT
TACCATTGGATGTGTCGTGTTTTGTTTGGCCATGTCTTACCTTTCCGAAG
AAATGGGACTGGCCATTGAACTAGGCGCGTTTGCGGCTGGCATGATGTTG
TCCGAGTCTCGACATAAGAATCGTGTCGAGAGCAGCGTGGAGAGCATTCG
CAGCGTGTTCTCTGCAATTTTCTTCATCTCGGTGGGAATGATGATCCACT
GGAGATACTTTTATCAGAACTTTGCCAAGATGGCGGTGTTACTCGTTGTC
ATCCTGGTGGTGAAGACTTTTGTAATGGGCGCTGTCATCTGCGTCCTGGG
GGGATTACCATTGCGAACGTCCATGGCGTGTGGCGCAGCAATCGCACAAG
CGGGAGAGTTCACTTTTGTTGTGGCTTCCAAAGGACAGGCGTTGTTGCTT
TTCTCCGCATCAGAAGCTAGAATGATCAATGGCGCAACCGCTCTTTCGAT
GCTTGCAACGCCTTATATCATTCGTTATGCACGGAAATGGACAGCAAGCG
GGCTTCAAAGATCGGATGACCCAAGCGTGTGA