Ggra9925.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9925.t1
Unique NameGgra9925.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length360
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:108529..109682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_00775T0
Preferred nameDYS1
PFAMsDS
Max annot lvl4751|Fungi
KEGG koko:K00809
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006417,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008612,GO:0009058,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016740,GO:0016765,GO:0018193,GO:0018205,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0032268,GO:0034038,GO:0034248,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0051604,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:1901564,GO:2000112,GO:2000765
Evalue5.06e-158
EggNOG OGsCOG1899@1|root,KOG2924@2759|Eukaryota,38CMK@33154|Opisthokonta,3NTXI@4751|Fungi
EC2.5.1.46
DescriptionDeoxyhypusine synthase
COG categoryO
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9925Ggra9925Gracilaria gracilis GNS1m malegenetig00000887_pilon 108529..109682 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9925.t1Ggra9925.t1Gracilaria gracilis GNS1m malepolypeptidetig00000887_pilon 108529..109682 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9925.t1.start1Ggra9925.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000887_pilon 108529..108531 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9925.t1.CDS1Ggra9925.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000887_pilon 108529..108753 +
Ggra9925.t1.CDS2Ggra9925.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000887_pilon 108828..109682 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9925.t1.exon1Ggra9925.t1.exon1Gracilaria gracilis GNS1m maleexontig00000887_pilon 108529..108753 +
Ggra9925.t1.exon2Ggra9925.t1.exon2Gracilaria gracilis GNS1m maleexontig00000887_pilon 108828..109682 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9925.t1.intron1Ggra9925.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000887_pilon 108754..108827 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9925.t1.stop1Ggra9925.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000887_pilon 109680..109682 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9925.t1 ID=Ggra9925.t1|Name=Ggra9925.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=360bp
MSPAKPESALSSDLPKLAADAVLQQSERLPQNTPVVRGYDFSGDVVDYDA
LLASYKRSGFQATNFGIAVDIINDMITWKPSTAQIESGVSPSARCNIFLG
YTSNMISSGVRETIKYLVQNRHVHAIVTSAGGVEEDLIKCLGPTGVGSFR
VDDAQLRKRGINRIGNLMVPNDNYCKFEDWIIPLLDEALLIQKESGCVWS
PSTLIKFFGERINNEDSVLYWAAKNDIPVFCPALTDGSIGDMLFFHSYKN
PGLVVDIVQDVRRINRIAIDAPATGMIIVGGGIVKHHIANANLMRNGADF
SVYLNTGQEYDGSDAGASPNEAISWGKIKINGKKVKIHAEASLILPLLVA
QTFAKSKQE*
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spliced messenger RNA

>Ggra9925.t1 ID=Ggra9925.t1|Name=Ggra9925.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1080bp|location=Sequence derived from alignment at tig00000887_pilon:108529..109682+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCAGCAAAACCAGAAAGCGCTCTCTCGTCTGACCTTCCTAAACT
TGCCGCCGATGCCGTTCTACAGCAATCAGAACGACTTCCGCAGAATACAC
CTGTTGTGCGTGGTTACGATTTCTCCGGGGATGTGGTTGACTACGATGCA
CTTTTGGCATCCTACAAGCGCAGTGGATTTCAGGCCACAAACTTTGGAAT
TGCCGTTGACATCATCAATGATATGATTACTTGGAAACCTTCAACAGCCC
AGATTGAATCAGGTGTATCTCCTAGTGCCAGATGTAATATCTTTCTTGGT
TACACTTCTAATATGATATCTTCCGGTGTTAGAGAAACTATCAAGTATTT
GGTTCAGAATCGCCATGTGCACGCTATTGTCACCTCGGCAGGTGGTGTTG
AAGAGGATCTCATAAAGTGTCTTGGTCCCACAGGCGTTGGTTCCTTCCGT
GTTGATGATGCACAACTGCGAAAACGCGGCATAAATCGTATCGGTAACTT
GATGGTTCCAAACGACAACTACTGCAAATTTGAAGATTGGATCATTCCAC
TGCTTGACGAGGCGCTCTTGATTCAGAAGGAAAGCGGATGTGTATGGTCA
CCAAGTACTTTGATCAAATTCTTCGGTGAACGCATCAATAACGAAGACTC
AGTTTTGTATTGGGCTGCCAAGAATGACATTCCAGTTTTCTGCCCCGCCC
TCACGGATGGATCAATAGGAGACATGCTCTTTTTTCATTCCTACAAGAAC
CCTGGCCTAGTTGTTGATATTGTGCAGGATGTTCGTCGCATCAATCGCAT
CGCTATAGACGCTCCTGCCACTGGAATGATCATCGTTGGAGGCGGTATTG
TGAAGCACCATATTGCAAATGCTAACCTGATGAGGAATGGGGCCGATTTC
TCGGTGTACCTCAACACCGGTCAGGAATATGACGGGTCTGATGCTGGTGC
ATCACCAAATGAAGCTATTTCATGGGGGAAAATCAAGATCAACGGCAAGA
AAGTCAAGATCCACGCGGAAGCTTCGTTGATTCTTCCTCTGCTAGTTGCC
CAAACGTTTGCCAAATCAAAGCAGGAATAG
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protein sequence of Ggra9925.t1

>Ggra9925.t1 ID=Ggra9925.t1|Name=Ggra9925.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=360bp
MSPAKPESALSSDLPKLAADAVLQQSERLPQNTPVVRGYDFSGDVVDYDA
LLASYKRSGFQATNFGIAVDIINDMITWKPSTAQIESGVSPSARCNIFLG
YTSNMISSGVRETIKYLVQNRHVHAIVTSAGGVEEDLIKCLGPTGVGSFR
VDDAQLRKRGINRIGNLMVPNDNYCKFEDWIIPLLDEALLIQKESGCVWS
PSTLIKFFGERINNEDSVLYWAAKNDIPVFCPALTDGSIGDMLFFHSYKN
PGLVVDIVQDVRRINRIAIDAPATGMIIVGGGIVKHHIANANLMRNGADF
SVYLNTGQEYDGSDAGASPNEAISWGKIKINGKKVKIHAEASLILPLLVA
QTFAKSKQE*
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mRNA from alignment at tig00000887_pilon:108529..109682+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9925.t1 ID=Ggra9925.t1|Name=Ggra9925.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1154bp|location=Sequence derived from alignment at tig00000887_pilon:108529..109682+ (Gracilaria gracilis GNS1m male)
ATGTCGCCAGCAAAACCAGAAAGCGCTCTCTCGTCTGACCTTCCTAAACT
TGCCGCCGATGCCGTTCTACAGCAATCAGAACGACTTCCGCAGAATACAC
CTGTTGTGCGTGGTTACGATTTCTCCGGGGATGTGGTTGACTACGATGCA
CTTTTGGCATCCTACAAGCGCAGTGGATTTCAGGCCACAAACTTTGGAAT
TGCCGTTGACATCATCAATGATATGGTGCGTTCATTCTTGTCTATATTCG
TTGTCAGTCCTTCTGCGGGAGCTTGCGTACTGATCTATTTGTTTTGCAGA
TTACTTGGAAACCTTCAACAGCCCAGATTGAATCAGGTGTATCTCCTAGT
GCCAGATGTAATATCTTTCTTGGTTACACTTCTAATATGATATCTTCCGG
TGTTAGAGAAACTATCAAGTATTTGGTTCAGAATCGCCATGTGCACGCTA
TTGTCACCTCGGCAGGTGGTGTTGAAGAGGATCTCATAAAGTGTCTTGGT
CCCACAGGCGTTGGTTCCTTCCGTGTTGATGATGCACAACTGCGAAAACG
CGGCATAAATCGTATCGGTAACTTGATGGTTCCAAACGACAACTACTGCA
AATTTGAAGATTGGATCATTCCACTGCTTGACGAGGCGCTCTTGATTCAG
AAGGAAAGCGGATGTGTATGGTCACCAAGTACTTTGATCAAATTCTTCGG
TGAACGCATCAATAACGAAGACTCAGTTTTGTATTGGGCTGCCAAGAATG
ACATTCCAGTTTTCTGCCCCGCCCTCACGGATGGATCAATAGGAGACATG
CTCTTTTTTCATTCCTACAAGAACCCTGGCCTAGTTGTTGATATTGTGCA
GGATGTTCGTCGCATCAATCGCATCGCTATAGACGCTCCTGCCACTGGAA
TGATCATCGTTGGAGGCGGTATTGTGAAGCACCATATTGCAAATGCTAAC
CTGATGAGGAATGGGGCCGATTTCTCGGTGTACCTCAACACCGGTCAGGA
ATATGACGGGTCTGATGCTGGTGCATCACCAAATGAAGCTATTTCATGGG
GGAAAATCAAGATCAACGGCAAGAAAGTCAAGATCCACGCGGAAGCTTCG
TTGATTCTTCCTCTGCTAGTTGCCCAAACGTTTGCCAAATCAAAGCAGGA
ATAG
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Coding sequence (CDS) from alignment at tig00000887_pilon:108529..109682+

>Ggra9925.t1 ID=Ggra9925.t1|Name=Ggra9925.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1080bp|location=Sequence derived from alignment at tig00000887_pilon:108529..109682+ (Gracilaria gracilis GNS1m male)
ATGTCGCCAGCAAAACCAGAAAGCGCTCTCTCGTCTGACCTTCCTAAACT
TGCCGCCGATGCCGTTCTACAGCAATCAGAACGACTTCCGCAGAATACAC
CTGTTGTGCGTGGTTACGATTTCTCCGGGGATGTGGTTGACTACGATGCA
CTTTTGGCATCCTACAAGCGCAGTGGATTTCAGGCCACAAACTTTGGAAT
TGCCGTTGACATCATCAATGATATGATTACTTGGAAACCTTCAACAGCCC
AGATTGAATCAGGTGTATCTCCTAGTGCCAGATGTAATATCTTTCTTGGT
TACACTTCTAATATGATATCTTCCGGTGTTAGAGAAACTATCAAGTATTT
GGTTCAGAATCGCCATGTGCACGCTATTGTCACCTCGGCAGGTGGTGTTG
AAGAGGATCTCATAAAGTGTCTTGGTCCCACAGGCGTTGGTTCCTTCCGT
GTTGATGATGCACAACTGCGAAAACGCGGCATAAATCGTATCGGTAACTT
GATGGTTCCAAACGACAACTACTGCAAATTTGAAGATTGGATCATTCCAC
TGCTTGACGAGGCGCTCTTGATTCAGAAGGAAAGCGGATGTGTATGGTCA
CCAAGTACTTTGATCAAATTCTTCGGTGAACGCATCAATAACGAAGACTC
AGTTTTGTATTGGGCTGCCAAGAATGACATTCCAGTTTTCTGCCCCGCCC
TCACGGATGGATCAATAGGAGACATGCTCTTTTTTCATTCCTACAAGAAC
CCTGGCCTAGTTGTTGATATTGTGCAGGATGTTCGTCGCATCAATCGCAT
CGCTATAGACGCTCCTGCCACTGGAATGATCATCGTTGGAGGCGGTATTG
TGAAGCACCATATTGCAAATGCTAACCTGATGAGGAATGGGGCCGATTTC
TCGGTGTACCTCAACACCGGTCAGGAATATGACGGGTCTGATGCTGGTGC
ATCACCAAATGAAGCTATTTCATGGGGGAAAATCAAGATCAACGGCAAGA
AAGTCAAGATCCACGCGGAAGCTTCGTTGATTCTTCCTCTGCTAGTTGCC
CAAACGTTTGCCAAATCAAAGCAGGAATAG
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