Ggra9923.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9923.t1
Unique Name	Ggra9923.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	553

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000887_pilon	contig	tig00000887_pilon:105522..107180 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706406.1
PFAMs	DUF295,F-box,RHD3
Max annot lvl	2759\|Eukaryota
Evalue	1.74e-71
EggNOG OGs	KOG2203@1\|root,KOG2203@2759\|Eukaryota
Description	GTP binding
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9923	Ggra9923	Gracilaria gracilis GNS1m male	gene	tig00000887_pilon 105522..107180 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9923.t1.start1	Ggra9923.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000887_pilon 105522..105524 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9923.t1.CDS1	Ggra9923.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000887_pilon 105522..107180 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9923.t1.exon1	Ggra9923.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000887_pilon 105522..107180 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9923.t1.stop1	Ggra9923.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000887_pilon 107178..107180 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9923.t1	Ggra9923.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000887_pilon 105522..107180 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000887_pilon:105522..107180+
coding sequence from alignment at tig00000887_pilon:105522..107180+

mRNA sequence

>Ggra9923.t1 ID=Ggra9923.t1|Name=Ggra9923.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=553bp
MSACQLIDAEGRFINALPGSEGNTTLHYTTVAVVGCQSGGKSTLLNRAFG
TGFPVLNAPKSGRRRTTLGVWTALRTEPHALVILDVEGTDSRERGEGAKA
FESRTTLFALALADVVVVNMWAHDVGRYSAANYELFETVFAHAVALRRNS
TVMKQRPVRVLIVVRDHDGESNVADIRRVLMGDLHNLWDSLKFGSIQFSS
LFDMDVVALPHMVYAPEEFENGVKKLAESISKGCRRREAAMVPLEGFDAL
AKTVWSAICRSTGGEGADARFTLDLPKHAALAAHFRVGEIVMSIFDGSVG
VKLEDLRAEIESEWRRPVREYGARVEAIIHEAFQTFDHATASYQGGAAVE
AVKTRRTEMGLQLVSRISVLRDRYLSVCRDFCMNGFEDEFRPMLGGTNGF
ERNAKRLANTFIAKYRALADGAHLPASLRSYERMQESIPHEGEESSELPP
ELDPLGMEFEVLDTGSEDEYSCERFKRDVLRMVEERKQLGELMLPGNGAP
LAIGPKQEPWWKGLLIRAAILFINYLQATQGQRAALKLHRKHEREFPPGP
TF*

spliced messenger RNA

>Ggra9923.t1 ID=Ggra9923.t1|Name=Ggra9923.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1659bp|location=Sequence derived from alignment at tig00000887_pilon:105522..107180+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCCTGTCAACTAATTGATGCAGAGGGGCGCTTCATCAATGCTCT
TCCTGGCTCAGAAGGAAACACGACTTTGCACTACACGACGGTGGCGGTTG
TCGGCTGTCAGTCTGGAGGAAAATCCACCCTTCTAAACAGAGCATTTGGT
ACAGGCTTTCCAGTGTTAAATGCTCCTAAAAGTGGAAGACGTCGTACAAC
ATTGGGTGTGTGGACAGCTCTGCGAACCGAACCCCATGCGCTGGTGATTC
TTGATGTGGAAGGGACAGATTCTCGAGAGAGGGGAGAAGGAGCAAAGGCT
TTCGAGAGCAGAACTACTTTATTTGCACTTGCCCTTGCTGATGTGGTTGT
TGTGAACATGTGGGCTCATGATGTCGGACGTTATTCTGCCGCCAATTATG
AGCTTTTTGAGACGGTCTTCGCCCATGCTGTCGCGCTTCGTCGTAACTCG
ACAGTAATGAAACAGCGGCCTGTACGCGTTCTCATTGTCGTTCGGGATCA
TGATGGAGAGTCTAACGTTGCTGATATACGACGTGTTCTCATGGGTGACC
TCCACAACTTGTGGGACTCGCTCAAATTTGGATCCATTCAGTTCTCTTCG
CTCTTTGACATGGATGTTGTCGCTTTGCCACATATGGTTTATGCCCCTGA
AGAATTCGAAAACGGAGTTAAGAAGTTAGCAGAAAGCATATCAAAGGGGT
GCAGACGAAGGGAAGCTGCCATGGTCCCTCTCGAAGGATTCGACGCTTTA
GCAAAGACAGTTTGGTCTGCTATATGTCGAAGCACAGGGGGGGAGGGTGC
CGATGCCCGCTTCACCCTCGACCTGCCAAAGCATGCCGCCTTAGCAGCTC
ACTTTAGAGTTGGGGAAATAGTGATGTCTATATTTGATGGTTCTGTTGGC
GTGAAATTGGAGGACCTTCGCGCCGAGATTGAATCTGAATGGCGTCGACC
CGTTCGGGAGTACGGCGCCCGAGTTGAAGCTATAATCCATGAAGCTTTTC
AGACGTTCGACCACGCTACAGCTTCCTACCAAGGTGGAGCTGCTGTAGAA
GCTGTGAAAACGAGACGAACTGAAATGGGACTTCAGCTGGTATCTCGTAT
TTCGGTTTTGCGAGATCGGTACCTCTCTGTATGTCGGGACTTCTGTATGA
ACGGGTTTGAAGATGAATTCAGACCCATGTTGGGAGGAACAAACGGGTTT
GAACGAAATGCGAAGAGGCTCGCAAACACTTTTATAGCGAAGTATAGAGC
TCTTGCGGACGGTGCACACCTACCTGCCAGTTTGAGAAGCTATGAAAGAA
TGCAAGAAAGCATACCCCATGAAGGTGAAGAGTCATCAGAGCTTCCGCCT
GAATTGGATCCGTTAGGCATGGAATTTGAAGTTCTAGACACCGGAAGTGA
GGACGAGTACTCATGTGAGAGGTTTAAGAGAGATGTTCTCCGAATGGTAG
AAGAGCGGAAGCAACTCGGCGAACTTATGTTGCCTGGGAATGGAGCGCCG
TTAGCCATCGGTCCGAAACAAGAGCCGTGGTGGAAGGGTCTGCTAATACG
TGCCGCAATTCTGTTTATCAATTACTTGCAAGCAACGCAAGGGCAACGAG
CCGCTCTGAAACTGCACAGGAAGCATGAGCGAGAATTTCCACCAGGACCA
ACGTTTTAA

protein sequence of Ggra9923.t1

>Ggra9923.t1 ID=Ggra9923.t1|Name=Ggra9923.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=553bp
MSACQLIDAEGRFINALPGSEGNTTLHYTTVAVVGCQSGGKSTLLNRAFG
TGFPVLNAPKSGRRRTTLGVWTALRTEPHALVILDVEGTDSRERGEGAKA
FESRTTLFALALADVVVVNMWAHDVGRYSAANYELFETVFAHAVALRRNS
TVMKQRPVRVLIVVRDHDGESNVADIRRVLMGDLHNLWDSLKFGSIQFSS
LFDMDVVALPHMVYAPEEFENGVKKLAESISKGCRRREAAMVPLEGFDAL
AKTVWSAICRSTGGEGADARFTLDLPKHAALAAHFRVGEIVMSIFDGSVG
VKLEDLRAEIESEWRRPVREYGARVEAIIHEAFQTFDHATASYQGGAAVE
AVKTRRTEMGLQLVSRISVLRDRYLSVCRDFCMNGFEDEFRPMLGGTNGF
ERNAKRLANTFIAKYRALADGAHLPASLRSYERMQESIPHEGEESSELPP
ELDPLGMEFEVLDTGSEDEYSCERFKRDVLRMVEERKQLGELMLPGNGAP
LAIGPKQEPWWKGLLIRAAILFINYLQATQGQRAALKLHRKHEREFPPGP
TF*

mRNA from alignment at tig00000887_pilon:105522..107180+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9923.t1 ID=Ggra9923.t1|Name=Ggra9923.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1659bp|location=Sequence derived from alignment at tig00000887_pilon:105522..107180+ (Gracilaria gracilis GNS1m male)
ATGTCCGCCTGTCAACTAATTGATGCAGAGGGGCGCTTCATCAATGCTCT
TCCTGGCTCAGAAGGAAACACGACTTTGCACTACACGACGGTGGCGGTTG
TCGGCTGTCAGTCTGGAGGAAAATCCACCCTTCTAAACAGAGCATTTGGT
ACAGGCTTTCCAGTGTTAAATGCTCCTAAAAGTGGAAGACGTCGTACAAC
ATTGGGTGTGTGGACAGCTCTGCGAACCGAACCCCATGCGCTGGTGATTC
TTGATGTGGAAGGGACAGATTCTCGAGAGAGGGGAGAAGGAGCAAAGGCT
TTCGAGAGCAGAACTACTTTATTTGCACTTGCCCTTGCTGATGTGGTTGT
TGTGAACATGTGGGCTCATGATGTCGGACGTTATTCTGCCGCCAATTATG
AGCTTTTTGAGACGGTCTTCGCCCATGCTGTCGCGCTTCGTCGTAACTCG
ACAGTAATGAAACAGCGGCCTGTACGCGTTCTCATTGTCGTTCGGGATCA
TGATGGAGAGTCTAACGTTGCTGATATACGACGTGTTCTCATGGGTGACC
TCCACAACTTGTGGGACTCGCTCAAATTTGGATCCATTCAGTTCTCTTCG
CTCTTTGACATGGATGTTGTCGCTTTGCCACATATGGTTTATGCCCCTGA
AGAATTCGAAAACGGAGTTAAGAAGTTAGCAGAAAGCATATCAAAGGGGT
GCAGACGAAGGGAAGCTGCCATGGTCCCTCTCGAAGGATTCGACGCTTTA
GCAAAGACAGTTTGGTCTGCTATATGTCGAAGCACAGGGGGGGAGGGTGC
CGATGCCCGCTTCACCCTCGACCTGCCAAAGCATGCCGCCTTAGCAGCTC
ACTTTAGAGTTGGGGAAATAGTGATGTCTATATTTGATGGTTCTGTTGGC
GTGAAATTGGAGGACCTTCGCGCCGAGATTGAATCTGAATGGCGTCGACC
CGTTCGGGAGTACGGCGCCCGAGTTGAAGCTATAATCCATGAAGCTTTTC
AGACGTTCGACCACGCTACAGCTTCCTACCAAGGTGGAGCTGCTGTAGAA
GCTGTGAAAACGAGACGAACTGAAATGGGACTTCAGCTGGTATCTCGTAT
TTCGGTTTTGCGAGATCGGTACCTCTCTGTATGTCGGGACTTCTGTATGA
ACGGGTTTGAAGATGAATTCAGACCCATGTTGGGAGGAACAAACGGGTTT
GAACGAAATGCGAAGAGGCTCGCAAACACTTTTATAGCGAAGTATAGAGC
TCTTGCGGACGGTGCACACCTACCTGCCAGTTTGAGAAGCTATGAAAGAA
TGCAAGAAAGCATACCCCATGAAGGTGAAGAGTCATCAGAGCTTCCGCCT
GAATTGGATCCGTTAGGCATGGAATTTGAAGTTCTAGACACCGGAAGTGA
GGACGAGTACTCATGTGAGAGGTTTAAGAGAGATGTTCTCCGAATGGTAG
AAGAGCGGAAGCAACTCGGCGAACTTATGTTGCCTGGGAATGGAGCGCCG
TTAGCCATCGGTCCGAAACAAGAGCCGTGGTGGAAGGGTCTGCTAATACG
TGCCGCAATTCTGTTTATCAATTACTTGCAAGCAACGCAAGGGCAACGAG
CCGCTCTGAAACTGCACAGGAAGCATGAGCGAGAATTTCCACCAGGACCA
ACGTTTTAA

Coding sequence (CDS) from alignment at tig00000887_pilon:105522..107180+

>Ggra9923.t1 ID=Ggra9923.t1|Name=Ggra9923.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1659bp|location=Sequence derived from alignment at tig00000887_pilon:105522..107180+ (Gracilaria gracilis GNS1m male)
ATGTCCGCCTGTCAACTAATTGATGCAGAGGGGCGCTTCATCAATGCTCT
TCCTGGCTCAGAAGGAAACACGACTTTGCACTACACGACGGTGGCGGTTG
TCGGCTGTCAGTCTGGAGGAAAATCCACCCTTCTAAACAGAGCATTTGGT
ACAGGCTTTCCAGTGTTAAATGCTCCTAAAAGTGGAAGACGTCGTACAAC
ATTGGGTGTGTGGACAGCTCTGCGAACCGAACCCCATGCGCTGGTGATTC
TTGATGTGGAAGGGACAGATTCTCGAGAGAGGGGAGAAGGAGCAAAGGCT
TTCGAGAGCAGAACTACTTTATTTGCACTTGCCCTTGCTGATGTGGTTGT
TGTGAACATGTGGGCTCATGATGTCGGACGTTATTCTGCCGCCAATTATG
AGCTTTTTGAGACGGTCTTCGCCCATGCTGTCGCGCTTCGTCGTAACTCG
ACAGTAATGAAACAGCGGCCTGTACGCGTTCTCATTGTCGTTCGGGATCA
TGATGGAGAGTCTAACGTTGCTGATATACGACGTGTTCTCATGGGTGACC
TCCACAACTTGTGGGACTCGCTCAAATTTGGATCCATTCAGTTCTCTTCG
CTCTTTGACATGGATGTTGTCGCTTTGCCACATATGGTTTATGCCCCTGA
AGAATTCGAAAACGGAGTTAAGAAGTTAGCAGAAAGCATATCAAAGGGGT
GCAGACGAAGGGAAGCTGCCATGGTCCCTCTCGAAGGATTCGACGCTTTA
GCAAAGACAGTTTGGTCTGCTATATGTCGAAGCACAGGGGGGGAGGGTGC
CGATGCCCGCTTCACCCTCGACCTGCCAAAGCATGCCGCCTTAGCAGCTC
ACTTTAGAGTTGGGGAAATAGTGATGTCTATATTTGATGGTTCTGTTGGC
GTGAAATTGGAGGACCTTCGCGCCGAGATTGAATCTGAATGGCGTCGACC
CGTTCGGGAGTACGGCGCCCGAGTTGAAGCTATAATCCATGAAGCTTTTC
AGACGTTCGACCACGCTACAGCTTCCTACCAAGGTGGAGCTGCTGTAGAA
GCTGTGAAAACGAGACGAACTGAAATGGGACTTCAGCTGGTATCTCGTAT
TTCGGTTTTGCGAGATCGGTACCTCTCTGTATGTCGGGACTTCTGTATGA
ACGGGTTTGAAGATGAATTCAGACCCATGTTGGGAGGAACAAACGGGTTT
GAACGAAATGCGAAGAGGCTCGCAAACACTTTTATAGCGAAGTATAGAGC
TCTTGCGGACGGTGCACACCTACCTGCCAGTTTGAGAAGCTATGAAAGAA
TGCAAGAAAGCATACCCCATGAAGGTGAAGAGTCATCAGAGCTTCCGCCT
GAATTGGATCCGTTAGGCATGGAATTTGAAGTTCTAGACACCGGAAGTGA
GGACGAGTACTCATGTGAGAGGTTTAAGAGAGATGTTCTCCGAATGGTAG
AAGAGCGGAAGCAACTCGGCGAACTTATGTTGCCTGGGAATGGAGCGCCG
TTAGCCATCGGTCCGAAACAAGAGCCGTGGTGGAAGGGTCTGCTAATACG
TGCCGCAATTCTGTTTATCAATTACTTGCAAGCAACGCAAGGGCAACGAG
CCGCTCTGAAACTGCACAGGAAGCATGAGCGAGAATTTCCACCAGGACCA
ACGTTTTAA