Ggra9940.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9940.t1
Unique NameGgra9940.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length320
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:204679..205638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9940Ggra9940Gracilaria gracilis GNS1m malegenetig00000887_pilon 204679..205638 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9940.t1.stop1Ggra9940.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000887_pilon 204679..204681 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9940.t1.CDS1Ggra9940.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000887_pilon 204679..205638 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9940.t1.exon1Ggra9940.t1.exon1Gracilaria gracilis GNS1m maleexontig00000887_pilon 204679..205638 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9940.t1.start1Ggra9940.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000887_pilon 205636..205638 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9940.t1Ggra9940.t1Gracilaria gracilis GNS1m malepolypeptidetig00000887_pilon 204679..205638 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9940.t1 ID=Ggra9940.t1|Name=Ggra9940.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=320bp
MNRTDSMIEEQECISFLSFDHGGTLQWYVTVPHNVADDFIFEKVRMFLAS
VSMSSAVFKPYDTDPFVDSEPDSTNAMSRATYINGADNTMMVAKQIEQGS
NEWHGFVVRPSSVVSEQIIISMVDAFEEAAEYLVGNLADKRMKFRGLSEN
IRRLYSSDNWWRKKSLFIHLRDSLVSLGKSHCRLGLRCLEREESGLQARL
PGTTTLSKFRSTLLRWYSCVPSIWVTCLTRKAMYYDNMTIGHSETLLWYY
VSVFSIGNRERRHYYVEAAIDETVRLWFRHRDWVTTIQFTANKSFPSAVP
RSVRHAADELMEELSESYR*
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spliced messenger RNA

>Ggra9940.t1 ID=Ggra9940.t1|Name=Ggra9940.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=960bp|location=Sequence derived from alignment at tig00000887_pilon:204679..205638- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAGAACTGATAGCATGATCGAAGAACAGGAATGCATATCATTTCT
CTCATTTGATCATGGCGGCACGTTGCAGTGGTACGTTACTGTCCCGCATA
ATGTTGCGGACGACTTCATCTTTGAAAAAGTGCGCATGTTTCTTGCCTCT
GTTTCCATGTCTTCGGCCGTTTTCAAGCCATATGACACGGATCCTTTCGT
AGATTCTGAGCCCGACAGTACTAATGCAATGTCTAGAGCTACCTACATCA
ATGGCGCGGACAACACAATGATGGTTGCTAAGCAGATCGAACAGGGCTCG
AACGAATGGCACGGTTTCGTTGTCAGGCCCTCATCTGTTGTCAGCGAGCA
AATAATTATATCAATGGTTGACGCATTCGAGGAAGCTGCGGAGTACCTCG
TGGGAAATCTTGCCGACAAACGTATGAAGTTCCGGGGACTCTCCGAGAAC
ATCCGAAGACTATACAGTAGTGACAACTGGTGGAGAAAGAAGTCTCTCTT
TATTCATTTACGGGATAGTCTGGTTAGCTTAGGAAAGAGTCATTGCCGTT
TGGGACTCAGGTGTTTAGAAAGGGAAGAATCAGGCTTGCAAGCTCGCCTT
CCAGGCACAACAACCCTGTCGAAGTTCAGAAGCACATTGCTTCGATGGTA
CTCCTGTGTTCCGTCCATTTGGGTTACTTGTTTGACACGCAAAGCAATGT
ACTATGACAATATGACTATTGGCCACTCAGAAACACTGTTGTGGTACTAC
GTTTCTGTCTTTTCCATCGGAAACCGCGAGCGAAGACACTACTACGTCGA
GGCAGCCATAGATGAAACTGTTCGACTATGGTTTAGACACCGTGATTGGG
TAACAACAATACAGTTTACAGCAAACAAGTCATTTCCATCGGCTGTGCCG
AGGTCGGTGCGCCATGCTGCTGATGAACTAATGGAAGAACTATCCGAAAG
CTACAGATAG
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protein sequence of Ggra9940.t1

>Ggra9940.t1 ID=Ggra9940.t1|Name=Ggra9940.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=320bp
MNRTDSMIEEQECISFLSFDHGGTLQWYVTVPHNVADDFIFEKVRMFLAS
VSMSSAVFKPYDTDPFVDSEPDSTNAMSRATYINGADNTMMVAKQIEQGS
NEWHGFVVRPSSVVSEQIIISMVDAFEEAAEYLVGNLADKRMKFRGLSEN
IRRLYSSDNWWRKKSLFIHLRDSLVSLGKSHCRLGLRCLEREESGLQARL
PGTTTLSKFRSTLLRWYSCVPSIWVTCLTRKAMYYDNMTIGHSETLLWYY
VSVFSIGNRERRHYYVEAAIDETVRLWFRHRDWVTTIQFTANKSFPSAVP
RSVRHAADELMEELSESYR*
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mRNA from alignment at tig00000887_pilon:204679..205638-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9940.t1 ID=Ggra9940.t1|Name=Ggra9940.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=960bp|location=Sequence derived from alignment at tig00000887_pilon:204679..205638- (Gracilaria gracilis GNS1m male)
ATGAACAGAACTGATAGCATGATCGAAGAACAGGAATGCATATCATTTCT
CTCATTTGATCATGGCGGCACGTTGCAGTGGTACGTTACTGTCCCGCATA
ATGTTGCGGACGACTTCATCTTTGAAAAAGTGCGCATGTTTCTTGCCTCT
GTTTCCATGTCTTCGGCCGTTTTCAAGCCATATGACACGGATCCTTTCGT
AGATTCTGAGCCCGACAGTACTAATGCAATGTCTAGAGCTACCTACATCA
ATGGCGCGGACAACACAATGATGGTTGCTAAGCAGATCGAACAGGGCTCG
AACGAATGGCACGGTTTCGTTGTCAGGCCCTCATCTGTTGTCAGCGAGCA
AATAATTATATCAATGGTTGACGCATTCGAGGAAGCTGCGGAGTACCTCG
TGGGAAATCTTGCCGACAAACGTATGAAGTTCCGGGGACTCTCCGAGAAC
ATCCGAAGACTATACAGTAGTGACAACTGGTGGAGAAAGAAGTCTCTCTT
TATTCATTTACGGGATAGTCTGGTTAGCTTAGGAAAGAGTCATTGCCGTT
TGGGACTCAGGTGTTTAGAAAGGGAAGAATCAGGCTTGCAAGCTCGCCTT
CCAGGCACAACAACCCTGTCGAAGTTCAGAAGCACATTGCTTCGATGGTA
CTCCTGTGTTCCGTCCATTTGGGTTACTTGTTTGACACGCAAAGCAATGT
ACTATGACAATATGACTATTGGCCACTCAGAAACACTGTTGTGGTACTAC
GTTTCTGTCTTTTCCATCGGAAACCGCGAGCGAAGACACTACTACGTCGA
GGCAGCCATAGATGAAACTGTTCGACTATGGTTTAGACACCGTGATTGGG
TAACAACAATACAGTTTACAGCAAACAAGTCATTTCCATCGGCTGTGCCG
AGGTCGGTGCGCCATGCTGCTGATGAACTAATGGAAGAACTATCCGAAAG
CTACAGATAG
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Coding sequence (CDS) from alignment at tig00000887_pilon:204679..205638-

>Ggra9940.t1 ID=Ggra9940.t1|Name=Ggra9940.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=960bp|location=Sequence derived from alignment at tig00000887_pilon:204679..205638- (Gracilaria gracilis GNS1m male)
ATGAACAGAACTGATAGCATGATCGAAGAACAGGAATGCATATCATTTCT
CTCATTTGATCATGGCGGCACGTTGCAGTGGTACGTTACTGTCCCGCATA
ATGTTGCGGACGACTTCATCTTTGAAAAAGTGCGCATGTTTCTTGCCTCT
GTTTCCATGTCTTCGGCCGTTTTCAAGCCATATGACACGGATCCTTTCGT
AGATTCTGAGCCCGACAGTACTAATGCAATGTCTAGAGCTACCTACATCA
ATGGCGCGGACAACACAATGATGGTTGCTAAGCAGATCGAACAGGGCTCG
AACGAATGGCACGGTTTCGTTGTCAGGCCCTCATCTGTTGTCAGCGAGCA
AATAATTATATCAATGGTTGACGCATTCGAGGAAGCTGCGGAGTACCTCG
TGGGAAATCTTGCCGACAAACGTATGAAGTTCCGGGGACTCTCCGAGAAC
ATCCGAAGACTATACAGTAGTGACAACTGGTGGAGAAAGAAGTCTCTCTT
TATTCATTTACGGGATAGTCTGGTTAGCTTAGGAAAGAGTCATTGCCGTT
TGGGACTCAGGTGTTTAGAAAGGGAAGAATCAGGCTTGCAAGCTCGCCTT
CCAGGCACAACAACCCTGTCGAAGTTCAGAAGCACATTGCTTCGATGGTA
CTCCTGTGTTCCGTCCATTTGGGTTACTTGTTTGACACGCAAAGCAATGT
ACTATGACAATATGACTATTGGCCACTCAGAAACACTGTTGTGGTACTAC
GTTTCTGTCTTTTCCATCGGAAACCGCGAGCGAAGACACTACTACGTCGA
GGCAGCCATAGATGAAACTGTTCGACTATGGTTTAGACACCGTGATTGGG
TAACAACAATACAGTTTACAGCAAACAAGTCATTTCCATCGGCTGTGCCG
AGGTCGGTGCGCCATGCTGCTGATGAACTAATGGAAGAACTATCCGAAAG
CTACAGATAG
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