Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 42099.EPrPV00000021329 |
| PFAMs | C2 |
| Max annot lvl | 2759|Eukaryota |
| Evalue | 2.61e-35 |
| EggNOG OGs | 2BVDY@1|root,2S261@2759|Eukaryota |
| Description | Protein kinase C conserved region 2 (CalB) |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra9912.t1.start1 | Ggra9912.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000887_pilon 77970..77972 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra9912.t1 ID=Ggra9912.t1|Name=Ggra9912.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=549bp
MPAEPIQVRLMRASGLPAVNKVGNMSDPYAVLQIVRTKETHTSHYCLNTV
NPTWYQCFVFHNVNPSDVLAISLFDRNLVKSDVPIGTAFISIGHAISHAS
AVVSQAAFEASQSASALNEPHSSHQSVPLPFQNARDTTIPPPPHSSSSIP
LSSIPPSYYPPPDSPPYSGTTSFDTPRSTPSTSSISSADGLHFYHPSASD
TFQPLQPHLSNEAGIKNFSEPGSPPGGQSALADAPTQRSMTMTYAVAPQG
NITLVVAPASVANLCAMVPSKLYKRFQINRTLEQITNMHNRPSQTHGSLN
AIGKNVGRFVKKVKPLQAAIDSVHPIQSVFQEHSTWKITMLGVLDVFASK
RHGWNRSYKAAQKIFQGPGSVVATQIVRLQHAYLYGGAVSVRPLQSLREG
LQEVRGSILDGKDFCEVLDYGHRRGKPRLFTYVLMPTKLYLAETGAEFFR
DMMSKHAMHSSASTEVVYAGELQFAVSGYGTGNPYAKLIIDNNSGTYAPG
KEDLPKVAEVFRRNFPGLEVITLDFRDPYLLTLSNQLPPTNLQEETVY* back to topspliced messenger RNA >Ggra9912.t1 ID=Ggra9912.t1|Name=Ggra9912.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1647bp|location=Sequence derived from alignment at tig00000887_pilon:76326..77972- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGCCCGCCGAACCCATCCAGGTGCGCCTCATGCGCGCGTCCGGCCTGCC
GGCCGTCAACAAGGTCGGCAATATGTCCGACCCCTACGCCGTTTTGCAGA
TTGTGCGCACAAAGGAGACCCACACCTCGCATTATTGCCTCAACACTGTC
AACCCTACGTGGTACCAATGCTTCGTGTTCCACAACGTCAACCCCAGCGA
TGTCTTGGCCATTAGCCTCTTTGACAGGAACCTTGTCAAGAGCGACGTTC
CAATAGGCACCGCCTTCATCTCCATCGGCCACGCCATATCGCACGCCTCC
GCTGTCGTGTCACAGGCTGCTTTCGAAGCCTCCCAGTCCGCTTCCGCCCT
CAATGAGCCGCATTCATCTCACCAATCCGTTCCGCTGCCCTTCCAGAACG
CGCGCGATACCACCATTCCCCCACCGCCCCATTCATCCTCTTCCATTCCG
CTCTCCTCCATCCCGCCCTCGTATTACCCTCCACCGGACAGTCCGCCGTA
TTCCGGCACCACCTCCTTCGATACACCGCGCTCCACACCATCCACTTCAA
GCATTTCTTCCGCCGATGGGCTGCATTTCTATCATCCCTCCGCCAGTGAT
ACTTTTCAACCTCTGCAGCCGCATCTGTCCAACGAAGCGGGTATAAAGAA
CTTTTCCGAACCGGGCTCGCCTCCCGGAGGCCAGTCCGCTCTAGCAGATG
CTCCTACGCAGCGATCTATGACCATGACCTACGCCGTTGCGCCGCAAGGC
AACATCACCCTCGTCGTCGCCCCGGCCTCCGTCGCGAACCTTTGCGCTAT
GGTTCCGTCAAAGCTCTACAAGCGCTTTCAGATCAATCGCACTCTGGAAC
AAATCACTAATATGCACAACAGACCCTCACAGACTCATGGCAGTCTCAAT
GCAATCGGCAAAAATGTTGGAAGGTTCGTCAAGAAAGTGAAGCCCCTCCA
GGCTGCAATCGACTCTGTGCATCCCATTCAGTCCGTGTTCCAAGAGCATT
CCACGTGGAAAATCACCATGCTCGGTGTATTGGACGTCTTTGCCAGCAAA
CGTCACGGATGGAATCGATCGTACAAGGCCGCCCAAAAAATCTTTCAGGG
CCCGGGTTCAGTGGTCGCAACGCAAATCGTTAGGTTGCAACACGCGTATC
TATATGGTGGCGCCGTTTCCGTCAGACCGTTGCAAAGTCTGCGGGAAGGT
TTGCAAGAAGTCCGCGGCAGCATACTTGACGGCAAGGACTTTTGTGAGGT
GCTTGATTACGGTCATAGACGGGGCAAGCCACGTTTGTTTACATATGTAC
TAATGCCCACAAAATTGTACCTGGCGGAAACGGGAGCCGAGTTCTTCCGC
GATATGATGTCCAAGCACGCAATGCATTCCTCGGCGAGCACGGAAGTCGT
ATACGCTGGCGAATTACAATTCGCTGTTTCCGGGTATGGGACTGGAAACC
CCTACGCCAAGTTGATAATCGACAATAATTCCGGAACCTACGCCCCGGGC
AAAGAGGACCTACCGAAGGTAGCAGAAGTGTTCCGTCGCAACTTCCCGGG
CCTTGAGGTGATTACCCTTGACTTCCGAGACCCATACTTGCTTACACTTA
GTAATCAATTACCCCCTACTAACCTGCAAGAAGAAACCGTTTACTAA back to topprotein sequence of Ggra9912.t1 >Ggra9912.t1 ID=Ggra9912.t1|Name=Ggra9912.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=549bp
MPAEPIQVRLMRASGLPAVNKVGNMSDPYAVLQIVRTKETHTSHYCLNTV
NPTWYQCFVFHNVNPSDVLAISLFDRNLVKSDVPIGTAFISIGHAISHAS
AVVSQAAFEASQSASALNEPHSSHQSVPLPFQNARDTTIPPPPHSSSSIP
LSSIPPSYYPPPDSPPYSGTTSFDTPRSTPSTSSISSADGLHFYHPSASD
TFQPLQPHLSNEAGIKNFSEPGSPPGGQSALADAPTQRSMTMTYAVAPQG
NITLVVAPASVANLCAMVPSKLYKRFQINRTLEQITNMHNRPSQTHGSLN
AIGKNVGRFVKKVKPLQAAIDSVHPIQSVFQEHSTWKITMLGVLDVFASK
RHGWNRSYKAAQKIFQGPGSVVATQIVRLQHAYLYGGAVSVRPLQSLREG
LQEVRGSILDGKDFCEVLDYGHRRGKPRLFTYVLMPTKLYLAETGAEFFR
DMMSKHAMHSSASTEVVYAGELQFAVSGYGTGNPYAKLIIDNNSGTYAPG
KEDLPKVAEVFRRNFPGLEVITLDFRDPYLLTLSNQLPPTNLQEETVY* back to topmRNA from alignment at tig00000887_pilon:76326..77972- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra9912.t1 ID=Ggra9912.t1|Name=Ggra9912.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1647bp|location=Sequence derived from alignment at tig00000887_pilon:76326..77972- (Gracilaria gracilis GNS1m male)
ATGCCCGCCGAACCCATCCAGGTGCGCCTCATGCGCGCGTCCGGCCTGCC
GGCCGTCAACAAGGTCGGCAATATGTCCGACCCCTACGCCGTTTTGCAGA
TTGTGCGCACAAAGGAGACCCACACCTCGCATTATTGCCTCAACACTGTC
AACCCTACGTGGTACCAATGCTTCGTGTTCCACAACGTCAACCCCAGCGA
TGTCTTGGCCATTAGCCTCTTTGACAGGAACCTTGTCAAGAGCGACGTTC
CAATAGGCACCGCCTTCATCTCCATCGGCCACGCCATATCGCACGCCTCC
GCTGTCGTGTCACAGGCTGCTTTCGAAGCCTCCCAGTCCGCTTCCGCCCT
CAATGAGCCGCATTCATCTCACCAATCCGTTCCGCTGCCCTTCCAGAACG
CGCGCGATACCACCATTCCCCCACCGCCCCATTCATCCTCTTCCATTCCG
CTCTCCTCCATCCCGCCCTCGTATTACCCTCCACCGGACAGTCCGCCGTA
TTCCGGCACCACCTCCTTCGATACACCGCGCTCCACACCATCCACTTCAA
GCATTTCTTCCGCCGATGGGCTGCATTTCTATCATCCCTCCGCCAGTGAT
ACTTTTCAACCTCTGCAGCCGCATCTGTCCAACGAAGCGGGTATAAAGAA
CTTTTCCGAACCGGGCTCGCCTCCCGGAGGCCAGTCCGCTCTAGCAGATG
CTCCTACGCAGCGATCTATGACCATGACCTACGCCGTTGCGCCGCAAGGC
AACATCACCCTCGTCGTCGCCCCGGCCTCCGTCGCGAACCTTTGCGCTAT
GGTTCCGTCAAAGCTCTACAAGCGCTTTCAGATCAATCGCACTCTGGAAC
AAATCACTAATATGCACAACAGACCCTCACAGACTCATGGCAGTCTCAAT
GCAATCGGCAAAAATGTTGGAAGGTTCGTCAAGAAAGTGAAGCCCCTCCA
GGCTGCAATCGACTCTGTGCATCCCATTCAGTCCGTGTTCCAAGAGCATT
CCACGTGGAAAATCACCATGCTCGGTGTATTGGACGTCTTTGCCAGCAAA
CGTCACGGATGGAATCGATCGTACAAGGCCGCCCAAAAAATCTTTCAGGG
CCCGGGTTCAGTGGTCGCAACGCAAATCGTTAGGTTGCAACACGCGTATC
TATATGGTGGCGCCGTTTCCGTCAGACCGTTGCAAAGTCTGCGGGAAGGT
TTGCAAGAAGTCCGCGGCAGCATACTTGACGGCAAGGACTTTTGTGAGGT
GCTTGATTACGGTCATAGACGGGGCAAGCCACGTTTGTTTACATATGTAC
TAATGCCCACAAAATTGTACCTGGCGGAAACGGGAGCCGAGTTCTTCCGC
GATATGATGTCCAAGCACGCAATGCATTCCTCGGCGAGCACGGAAGTCGT
ATACGCTGGCGAATTACAATTCGCTGTTTCCGGGTATGGGACTGGAAACC
CCTACGCCAAGTTGATAATCGACAATAATTCCGGAACCTACGCCCCGGGC
AAAGAGGACCTACCGAAGGTAGCAGAAGTGTTCCGTCGCAACTTCCCGGG
CCTTGAGGTGATTACCCTTGACTTCCGAGACCCATACTTGCTTACACTTA
GTAATCAATTACCCCCTACTAACCTGCAAGAAGAAACCGTTTACTAA back to topCoding sequence (CDS) from alignment at tig00000887_pilon:76326..77972- >Ggra9912.t1 ID=Ggra9912.t1|Name=Ggra9912.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1647bp|location=Sequence derived from alignment at tig00000887_pilon:76326..77972- (Gracilaria gracilis GNS1m male)
ATGCCCGCCGAACCCATCCAGGTGCGCCTCATGCGCGCGTCCGGCCTGCC
GGCCGTCAACAAGGTCGGCAATATGTCCGACCCCTACGCCGTTTTGCAGA
TTGTGCGCACAAAGGAGACCCACACCTCGCATTATTGCCTCAACACTGTC
AACCCTACGTGGTACCAATGCTTCGTGTTCCACAACGTCAACCCCAGCGA
TGTCTTGGCCATTAGCCTCTTTGACAGGAACCTTGTCAAGAGCGACGTTC
CAATAGGCACCGCCTTCATCTCCATCGGCCACGCCATATCGCACGCCTCC
GCTGTCGTGTCACAGGCTGCTTTCGAAGCCTCCCAGTCCGCTTCCGCCCT
CAATGAGCCGCATTCATCTCACCAATCCGTTCCGCTGCCCTTCCAGAACG
CGCGCGATACCACCATTCCCCCACCGCCCCATTCATCCTCTTCCATTCCG
CTCTCCTCCATCCCGCCCTCGTATTACCCTCCACCGGACAGTCCGCCGTA
TTCCGGCACCACCTCCTTCGATACACCGCGCTCCACACCATCCACTTCAA
GCATTTCTTCCGCCGATGGGCTGCATTTCTATCATCCCTCCGCCAGTGAT
ACTTTTCAACCTCTGCAGCCGCATCTGTCCAACGAAGCGGGTATAAAGAA
CTTTTCCGAACCGGGCTCGCCTCCCGGAGGCCAGTCCGCTCTAGCAGATG
CTCCTACGCAGCGATCTATGACCATGACCTACGCCGTTGCGCCGCAAGGC
AACATCACCCTCGTCGTCGCCCCGGCCTCCGTCGCGAACCTTTGCGCTAT
GGTTCCGTCAAAGCTCTACAAGCGCTTTCAGATCAATCGCACTCTGGAAC
AAATCACTAATATGCACAACAGACCCTCACAGACTCATGGCAGTCTCAAT
GCAATCGGCAAAAATGTTGGAAGGTTCGTCAAGAAAGTGAAGCCCCTCCA
GGCTGCAATCGACTCTGTGCATCCCATTCAGTCCGTGTTCCAAGAGCATT
CCACGTGGAAAATCACCATGCTCGGTGTATTGGACGTCTTTGCCAGCAAA
CGTCACGGATGGAATCGATCGTACAAGGCCGCCCAAAAAATCTTTCAGGG
CCCGGGTTCAGTGGTCGCAACGCAAATCGTTAGGTTGCAACACGCGTATC
TATATGGTGGCGCCGTTTCCGTCAGACCGTTGCAAAGTCTGCGGGAAGGT
TTGCAAGAAGTCCGCGGCAGCATACTTGACGGCAAGGACTTTTGTGAGGT
GCTTGATTACGGTCATAGACGGGGCAAGCCACGTTTGTTTACATATGTAC
TAATGCCCACAAAATTGTACCTGGCGGAAACGGGAGCCGAGTTCTTCCGC
GATATGATGTCCAAGCACGCAATGCATTCCTCGGCGAGCACGGAAGTCGT
ATACGCTGGCGAATTACAATTCGCTGTTTCCGGGTATGGGACTGGAAACC
CCTACGCCAAGTTGATAATCGACAATAATTCCGGAACCTACGCCCCGGGC
AAAGAGGACCTACCGAAGGTAGCAGAAGTGTTCCGTCGCAACTTCCCGGG
CCTTGAGGTGATTACCCTTGACTTCCGAGACCCATACTTGCTTACACTTA
GTAATCAATTACCCCCTACTAACCTGCAAGAAGAAACCGTTTACTAA back to top
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