Ggra9955.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9955.t1
Unique NameGgra9955.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length346
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:320461..321498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMR248CT
Preferred namePET127
PFAMsPet127
Max annot lvl2759|Eukaryota
GOsGO:0000957,GO:0000959,GO:0000960,GO:0000962,GO:0000963,GO:0000964,GO:0000966,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0006139,GO:0006396,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010608,GO:0016070,GO:0019219,GO:0019222,GO:0019439,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031967,GO:0031975,GO:0034641,GO:0034655,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043487,GO:0043488,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045935,GO:0046483,GO:0046700,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0071704,GO:0080090,GO:0090304,GO:0140053,GO:1901360,GO:1901361,GO:1901575,GO:1903311
Evalue7.88e-51
EggNOG OGs2CMAW@1|root,2QPU6@2759|Eukaryota
Descriptionmitochondrial RNA 5'-end processing
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9955Ggra9955Gracilaria gracilis GNS1m malegenetig00000887_pilon 320461..321498 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9955.t1.stop1Ggra9955.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000887_pilon 320461..320463 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9955.t1.CDS1Ggra9955.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000887_pilon 320461..321498 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9955.t1.exon1Ggra9955.t1.exon1Gracilaria gracilis GNS1m maleexontig00000887_pilon 320461..321498 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9955.t1.start1Ggra9955.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000887_pilon 321496..321498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9955.t1Ggra9955.t1Gracilaria gracilis GNS1m malepolypeptidetig00000887_pilon 320461..321498 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9955.t1 ID=Ggra9955.t1|Name=Ggra9955.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=346bp
MPSHFSKFHRRPVAFTLSRNQPGRDVYTVNAHSGTDTGPSNLSDLGYSME
RMLTMSPEDFASKYVLPPHRQRRTQPQSEMNPSADEHQFYHYSQASQFVL
RAQIDCRNPDTGELFDVKTRAVAKIRYDLPNYLQHASHKLRFLKDKTDSY
EREFYDMVHTVFFKYALQLRIGRMSGALVAYHNTTELLALEYTSLKKIES
YVFGMQRWADVAFGTAISLLERILDTITTTVPLHNTDDRLKVMLYTEWSK
LRMYAFVQHLQKDEQDTFGDAEFQRRERDVCLYSSRILDSCALYLSRAIA
LATYIRCPLRCAPRYIRAHSPRSSSVTFLPPPLSPTSSSPSPQSN*
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spliced messenger RNA

>Ggra9955.t1 ID=Ggra9955.t1|Name=Ggra9955.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1038bp|location=Sequence derived from alignment at tig00000887_pilon:320461..321498- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAGCCATTTTTCAAAGTTTCATCGCCGCCCGGTCGCCTTCACTCT
CTCGCGAAACCAACCTGGTCGCGATGTGTACACCGTCAACGCCCACTCTG
GAACCGACACCGGCCCTTCCAACCTGAGCGACTTGGGCTATTCCATGGAG
CGAATGCTCACCATGTCGCCCGAAGATTTTGCCTCAAAGTATGTTCTTCC
CCCCCATCGTCAGCGTCGAACACAGCCGCAATCCGAAATGAATCCATCCG
CCGATGAGCACCAGTTTTATCACTACTCTCAGGCTTCCCAGTTTGTGCTT
CGCGCCCAGATTGATTGTCGCAACCCCGACACCGGCGAGTTGTTCGATGT
CAAAACGCGTGCCGTCGCCAAGATTCGATATGATCTCCCAAACTACTTGC
AGCATGCTTCGCACAAGCTTCGCTTTCTCAAGGACAAGACCGACTCGTAC
GAGCGTGAGTTCTACGATATGGTTCACACAGTCTTCTTCAAGTACGCACT
TCAACTCCGCATTGGACGCATGTCGGGCGCGCTTGTCGCCTATCACAACA
CCACCGAGTTGCTTGCCTTGGAATACACCTCGCTCAAGAAGATTGAATCG
TACGTGTTTGGTATGCAACGATGGGCTGATGTCGCATTTGGTACTGCCAT
TAGTCTCCTGGAACGCATTCTGGATACCATTACCACCACTGTGCCTCTGC
ACAACACTGACGACCGGTTGAAGGTCATGTTGTACACAGAATGGTCCAAG
TTGAGAATGTACGCGTTCGTGCAGCACTTGCAGAAGGATGAACAAGATAC
TTTTGGAGATGCCGAATTCCAGCGCCGAGAACGCGATGTGTGCCTGTACA
GCAGCAGGATTCTCGACTCGTGCGCGTTGTACCTCTCGCGCGCCATTGCG
TTGGCCACATATATTCGCTGCCCACTCCGTTGTGCCCCCCGATATATCCG
CGCCCATTCGCCTCGTTCATCTAGCGTAACCTTTCTCCCGCCTCCTCTAT
CACCCACCTCTTCATCCCCCTCTCCTCAGAGTAACTGA
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protein sequence of Ggra9955.t1

>Ggra9955.t1 ID=Ggra9955.t1|Name=Ggra9955.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=346bp
MPSHFSKFHRRPVAFTLSRNQPGRDVYTVNAHSGTDTGPSNLSDLGYSME
RMLTMSPEDFASKYVLPPHRQRRTQPQSEMNPSADEHQFYHYSQASQFVL
RAQIDCRNPDTGELFDVKTRAVAKIRYDLPNYLQHASHKLRFLKDKTDSY
EREFYDMVHTVFFKYALQLRIGRMSGALVAYHNTTELLALEYTSLKKIES
YVFGMQRWADVAFGTAISLLERILDTITTTVPLHNTDDRLKVMLYTEWSK
LRMYAFVQHLQKDEQDTFGDAEFQRRERDVCLYSSRILDSCALYLSRAIA
LATYIRCPLRCAPRYIRAHSPRSSSVTFLPPPLSPTSSSPSPQSN*
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mRNA from alignment at tig00000887_pilon:320461..321498-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9955.t1 ID=Ggra9955.t1|Name=Ggra9955.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1038bp|location=Sequence derived from alignment at tig00000887_pilon:320461..321498- (Gracilaria gracilis GNS1m male)
ATGCCCAGCCATTTTTCAAAGTTTCATCGCCGCCCGGTCGCCTTCACTCT
CTCGCGAAACCAACCTGGTCGCGATGTGTACACCGTCAACGCCCACTCTG
GAACCGACACCGGCCCTTCCAACCTGAGCGACTTGGGCTATTCCATGGAG
CGAATGCTCACCATGTCGCCCGAAGATTTTGCCTCAAAGTATGTTCTTCC
CCCCCATCGTCAGCGTCGAACACAGCCGCAATCCGAAATGAATCCATCCG
CCGATGAGCACCAGTTTTATCACTACTCTCAGGCTTCCCAGTTTGTGCTT
CGCGCCCAGATTGATTGTCGCAACCCCGACACCGGCGAGTTGTTCGATGT
CAAAACGCGTGCCGTCGCCAAGATTCGATATGATCTCCCAAACTACTTGC
AGCATGCTTCGCACAAGCTTCGCTTTCTCAAGGACAAGACCGACTCGTAC
GAGCGTGAGTTCTACGATATGGTTCACACAGTCTTCTTCAAGTACGCACT
TCAACTCCGCATTGGACGCATGTCGGGCGCGCTTGTCGCCTATCACAACA
CCACCGAGTTGCTTGCCTTGGAATACACCTCGCTCAAGAAGATTGAATCG
TACGTGTTTGGTATGCAACGATGGGCTGATGTCGCATTTGGTACTGCCAT
TAGTCTCCTGGAACGCATTCTGGATACCATTACCACCACTGTGCCTCTGC
ACAACACTGACGACCGGTTGAAGGTCATGTTGTACACAGAATGGTCCAAG
TTGAGAATGTACGCGTTCGTGCAGCACTTGCAGAAGGATGAACAAGATAC
TTTTGGAGATGCCGAATTCCAGCGCCGAGAACGCGATGTGTGCCTGTACA
GCAGCAGGATTCTCGACTCGTGCGCGTTGTACCTCTCGCGCGCCATTGCG
TTGGCCACATATATTCGCTGCCCACTCCGTTGTGCCCCCCGATATATCCG
CGCCCATTCGCCTCGTTCATCTAGCGTAACCTTTCTCCCGCCTCCTCTAT
CACCCACCTCTTCATCCCCCTCTCCTCAGAGTAACTGA
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Coding sequence (CDS) from alignment at tig00000887_pilon:320461..321498-

>Ggra9955.t1 ID=Ggra9955.t1|Name=Ggra9955.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1038bp|location=Sequence derived from alignment at tig00000887_pilon:320461..321498- (Gracilaria gracilis GNS1m male)
ATGCCCAGCCATTTTTCAAAGTTTCATCGCCGCCCGGTCGCCTTCACTCT
CTCGCGAAACCAACCTGGTCGCGATGTGTACACCGTCAACGCCCACTCTG
GAACCGACACCGGCCCTTCCAACCTGAGCGACTTGGGCTATTCCATGGAG
CGAATGCTCACCATGTCGCCCGAAGATTTTGCCTCAAAGTATGTTCTTCC
CCCCCATCGTCAGCGTCGAACACAGCCGCAATCCGAAATGAATCCATCCG
CCGATGAGCACCAGTTTTATCACTACTCTCAGGCTTCCCAGTTTGTGCTT
CGCGCCCAGATTGATTGTCGCAACCCCGACACCGGCGAGTTGTTCGATGT
CAAAACGCGTGCCGTCGCCAAGATTCGATATGATCTCCCAAACTACTTGC
AGCATGCTTCGCACAAGCTTCGCTTTCTCAAGGACAAGACCGACTCGTAC
GAGCGTGAGTTCTACGATATGGTTCACACAGTCTTCTTCAAGTACGCACT
TCAACTCCGCATTGGACGCATGTCGGGCGCGCTTGTCGCCTATCACAACA
CCACCGAGTTGCTTGCCTTGGAATACACCTCGCTCAAGAAGATTGAATCG
TACGTGTTTGGTATGCAACGATGGGCTGATGTCGCATTTGGTACTGCCAT
TAGTCTCCTGGAACGCATTCTGGATACCATTACCACCACTGTGCCTCTGC
ACAACACTGACGACCGGTTGAAGGTCATGTTGTACACAGAATGGTCCAAG
TTGAGAATGTACGCGTTCGTGCAGCACTTGCAGAAGGATGAACAAGATAC
TTTTGGAGATGCCGAATTCCAGCGCCGAGAACGCGATGTGTGCCTGTACA
GCAGCAGGATTCTCGACTCGTGCGCGTTGTACCTCTCGCGCGCCATTGCG
TTGGCCACATATATTCGCTGCCCACTCCGTTGTGCCCCCCGATATATCCG
CGCCCATTCGCCTCGTTCATCTAGCGTAACCTTTCTCCCGCCTCCTCTAT
CACCCACCTCTTCATCCCCCTCTCCTCAGAGTAACTGA
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