Ggra9950.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9950.t1
Unique NameGgra9950.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length137
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:273309..273719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9950Ggra9950Gracilaria gracilis GNS1m malegenetig00000887_pilon 273309..273719 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9950.t1.stop1Ggra9950.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000887_pilon 273309..273311 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9950.t1.CDS1Ggra9950.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000887_pilon 273309..273719 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9950.t1.exon1Ggra9950.t1.exon1Gracilaria gracilis GNS1m maleexontig00000887_pilon 273309..273719 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9950.t1.start1Ggra9950.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000887_pilon 273717..273719 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9950.t1Ggra9950.t1Gracilaria gracilis GNS1m malepolypeptidetig00000887_pilon 273309..273719 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9950.t1 ID=Ggra9950.t1|Name=Ggra9950.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=137bp
MDLNDQPQPNKPSPDTVQPLLPTAGDTHQAYNDSAVHPLSTSGSDVDLQK
SVKEATAPPKKAEKDVQNYDEDTVRTLLTKMKEVGYGDRHHHRKSMKDIF
AAATALAEKDNGIKRTVKGWQKKFTRLKQEYSGYIA*
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spliced messenger RNA

>Ggra9950.t1 ID=Ggra9950.t1|Name=Ggra9950.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=411bp|location=Sequence derived from alignment at tig00000887_pilon:273309..273719- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTTAAATGACCAACCGCAGCCAAACAAGCCTTCCCCTGACACCGT
TCAACCCCTTCTGCCCACAGCTGGTGACACCCATCAGGCGTACAACGACT
CTGCCGTACACCCTCTTTCTACTTCCGGCTCTGATGTAGATCTACAGAAG
TCTGTTAAGGAAGCTACTGCGCCACCGAAGAAAGCCGAAAAAGACGTTCA
GAACTATGATGAAGATACAGTCAGAACTCTGCTGACAAAGATGAAAGAAG
TCGGCTACGGAGACAGGCACCACCACCGCAAGTCTATGAAAGATATATTC
GCTGCCGCAACTGCACTCGCTGAGAAAGACAACGGAATAAAAAGAACTGT
GAAAGGATGGCAGAAGAAATTTACTCGACTGAAGCAGGAGTATTCTGGCT
ACATTGCTTAA
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protein sequence of Ggra9950.t1

>Ggra9950.t1 ID=Ggra9950.t1|Name=Ggra9950.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=137bp
MDLNDQPQPNKPSPDTVQPLLPTAGDTHQAYNDSAVHPLSTSGSDVDLQK
SVKEATAPPKKAEKDVQNYDEDTVRTLLTKMKEVGYGDRHHHRKSMKDIF
AAATALAEKDNGIKRTVKGWQKKFTRLKQEYSGYIA*
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mRNA from alignment at tig00000887_pilon:273309..273719-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9950.t1 ID=Ggra9950.t1|Name=Ggra9950.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=411bp|location=Sequence derived from alignment at tig00000887_pilon:273309..273719- (Gracilaria gracilis GNS1m male)
ATGGATTTAAATGACCAACCGCAGCCAAACAAGCCTTCCCCTGACACCGT
TCAACCCCTTCTGCCCACAGCTGGTGACACCCATCAGGCGTACAACGACT
CTGCCGTACACCCTCTTTCTACTTCCGGCTCTGATGTAGATCTACAGAAG
TCTGTTAAGGAAGCTACTGCGCCACCGAAGAAAGCCGAAAAAGACGTTCA
GAACTATGATGAAGATACAGTCAGAACTCTGCTGACAAAGATGAAAGAAG
TCGGCTACGGAGACAGGCACCACCACCGCAAGTCTATGAAAGATATATTC
GCTGCCGCAACTGCACTCGCTGAGAAAGACAACGGAATAAAAAGAACTGT
GAAAGGATGGCAGAAGAAATTTACTCGACTGAAGCAGGAGTATTCTGGCT
ACATTGCTTAA
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Coding sequence (CDS) from alignment at tig00000887_pilon:273309..273719-

>Ggra9950.t1 ID=Ggra9950.t1|Name=Ggra9950.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=411bp|location=Sequence derived from alignment at tig00000887_pilon:273309..273719- (Gracilaria gracilis GNS1m male)
ATGGATTTAAATGACCAACCGCAGCCAAACAAGCCTTCCCCTGACACCGT
TCAACCCCTTCTGCCCACAGCTGGTGACACCCATCAGGCGTACAACGACT
CTGCCGTACACCCTCTTTCTACTTCCGGCTCTGATGTAGATCTACAGAAG
TCTGTTAAGGAAGCTACTGCGCCACCGAAGAAAGCCGAAAAAGACGTTCA
GAACTATGATGAAGATACAGTCAGAACTCTGCTGACAAAGATGAAAGAAG
TCGGCTACGGAGACAGGCACCACCACCGCAAGTCTATGAAAGATATATTC
GCTGCCGCAACTGCACTCGCTGAGAAAGACAACGGAATAAAAAGAACTGT
GAAAGGATGGCAGAAGAAATTTACTCGACTGAAGCAGGAGTATTCTGGCT
ACATTGCTTAA
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