Ggra9383.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9383.t1
Unique NameGgra9383.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length513
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:277605..279248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog52644.XP_010579150.1
Preferred nameALG12
PFAMsGlyco_transf_22
Max annot lvl33208|Metazoa
KEGG rclassRC00055,RC00523
KEGG koko:K01873,ko:K03847
KEGG ReactionR03665,R06260
KEGG Pathwayko00510,ko00513,ko00970,ko01100,map00510,map00513,map00970,map01100
KEGG ModuleM00055,M00359,M00360
GOsGO:0000009,GO:0000030,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006457,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006629,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0031984,GO:0034645,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0070085,GO:0071704,GO:0097502,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Evalue3.53e-81
EggNOG OGsKOG2516@1|root,KOG2516@2759|Eukaryota,38BVA@33154|Opisthokonta,3BBS2@33208|Metazoa,3D041@33213|Bilateria,47YWA@7711|Chordata,493V6@7742|Vertebrata,4GK1N@8782|Aves
EC2.4.1.260,6.1.1.9
Descriptiondol-P-Man Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase
COG categoryG
CAZyGT22
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko01007,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9383Ggra9383Gracilaria gracilis GNS1m malegenetig00000883_pilon 277605..279248 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9383.t1Ggra9383.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 277605..279248 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9383.t1.start1Ggra9383.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 277605..277607 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9383.t1.CDS1Ggra9383.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 277605..277682 +
Ggra9383.t1.CDS2Ggra9383.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000883_pilon 277788..279248 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9383.t1.exon1Ggra9383.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 277605..277682 +
Ggra9383.t1.exon2Ggra9383.t1.exon2Gracilaria gracilis GNS1m maleexontig00000883_pilon 277788..279248 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9383.t1.intron1Ggra9383.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000883_pilon 277683..277787 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9383.t1.stop1Ggra9383.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 279246..279248 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9383.t1 ID=Ggra9383.t1|Name=Ggra9383.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=513bp
MDFIFVETFLMFGVMLLHLVLTPFTKVEESFNLQAIYDLLYKSWTNVTSF
DHTEFPGAVPRTFLGPVIISLPSMIPKMMLRASPFAMLHIVRGALGSLVV
LSLVKVRISLSRRCSGLTGQLFTALTLTQFHILFYASRSLPNVYALILTN
LALACQLEPTATRRPYRAITLLSMACALFRSELCLYIFMTMVVNLAAGHI
SFIRTVMCGLQTAVMTALCSIIIDSYFWQRLSYPELEVFYFNVVLNKSAA
WGTLPFLWYFYNALPRALGGSYVLGLKALVADNGGLGTILLPALMFVIVY
SILPHKELRFIFYVLPVFNAAAAVAIESEIHRVRLMMTAGAGKKDDSSRK
TWRFVDLLRAAAFAGFVLLTFASCIAQTIVSSAASRWNYPSANAMLRMHE
IEDNLCTGNERRNGYVHIDVDSAMGGISQFVQESYDKKNSCWKWSYSKRE
DVEDLELKEFSHLVWNKAELEGFCVVHVENKFVGVDWRHRRIKSSPHTYV
HRNMNVSTAGCL*
back to top

spliced messenger RNA

>Ggra9383.t1 ID=Ggra9383.t1|Name=Ggra9383.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1539bp|location=Sequence derived from alignment at tig00000883_pilon:277605..279248+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTTCATCTTTGTAGAGACTTTTCTCATGTTTGGCGTGATGCTTCT
GCATCTCGTTCTCACTCCGTTTACAAAGGTAGAAGAGAGCTTTAACTTGC
AGGCTATTTACGATTTATTGTATAAGTCCTGGACGAATGTAACCAGCTTT
GATCACACTGAATTTCCTGGAGCCGTTCCTCGTACTTTTTTGGGGCCGGT
CATTATCTCGCTACCGTCAATGATACCGAAAATGATGTTGAGAGCCTCAC
CCTTTGCGATGCTTCACATTGTAAGAGGGGCTCTGGGGTCGTTGGTTGTC
CTATCACTGGTGAAAGTGCGAATTTCACTATCTCGCCGCTGTTCTGGGCT
GACGGGCCAGCTTTTCACTGCTCTTACTTTAACCCAGTTCCACATATTAT
TCTACGCAAGCCGCAGCCTGCCCAATGTATATGCTCTTATTCTAACTAAC
CTCGCCTTGGCGTGTCAACTTGAACCAACCGCTACTAGAAGGCCTTATCG
AGCCATAACTCTCTTGTCTATGGCATGTGCCTTGTTTCGATCGGAGCTTT
GTTTGTACATATTCATGACAATGGTTGTAAATCTTGCTGCGGGGCACATT
TCATTTATTCGCACAGTGATGTGTGGACTACAGACCGCAGTGATGACGGC
GCTATGCTCTATTATTATCGATTCATACTTTTGGCAACGGTTAAGTTATC
CAGAATTGGAAGTATTCTACTTCAACGTGGTTCTCAACAAGAGTGCAGCT
TGGGGTACTCTTCCGTTTTTGTGGTACTTTTACAATGCACTCCCACGAGC
ACTTGGTGGTTCATACGTTCTCGGTCTGAAAGCTCTCGTGGCAGACAATG
GAGGTCTGGGCACAATATTACTGCCTGCCCTTATGTTTGTGATTGTCTAT
TCCATTCTACCTCACAAGGAACTGAGATTCATTTTTTATGTGCTGCCTGT
TTTCAATGCTGCTGCTGCTGTGGCGATCGAATCCGAGATTCATCGGGTAC
GTCTCATGATGACAGCAGGGGCTGGGAAGAAGGATGACTCATCCAGGAAG
ACGTGGAGATTTGTTGATCTTTTGCGAGCTGCTGCGTTTGCAGGATTCGT
TTTGTTAACGTTTGCAAGCTGCATTGCTCAGACGATCGTTTCTTCTGCCG
CGTCACGATGGAATTATCCATCAGCAAACGCCATGTTGCGAATGCATGAA
ATTGAAGACAATCTATGCACAGGCAATGAACGACGTAACGGATACGTACA
TATTGACGTGGACTCGGCCATGGGCGGTATTTCGCAATTCGTGCAGGAGT
CTTATGATAAGAAAAACAGTTGTTGGAAGTGGAGCTACTCTAAACGGGAG
GATGTAGAGGATCTTGAGTTGAAAGAATTTTCCCATCTGGTCTGGAACAA
GGCCGAATTGGAGGGTTTCTGTGTCGTTCATGTTGAGAACAAATTCGTAG
GTGTAGATTGGCGACATCGTCGGATAAAGAGTAGCCCACATACATACGTG
CATCGGAACATGAATGTGTCAACGGCGGGTTGTCTATGA
back to top

protein sequence of Ggra9383.t1

>Ggra9383.t1 ID=Ggra9383.t1|Name=Ggra9383.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=513bp
MDFIFVETFLMFGVMLLHLVLTPFTKVEESFNLQAIYDLLYKSWTNVTSF
DHTEFPGAVPRTFLGPVIISLPSMIPKMMLRASPFAMLHIVRGALGSLVV
LSLVKVRISLSRRCSGLTGQLFTALTLTQFHILFYASRSLPNVYALILTN
LALACQLEPTATRRPYRAITLLSMACALFRSELCLYIFMTMVVNLAAGHI
SFIRTVMCGLQTAVMTALCSIIIDSYFWQRLSYPELEVFYFNVVLNKSAA
WGTLPFLWYFYNALPRALGGSYVLGLKALVADNGGLGTILLPALMFVIVY
SILPHKELRFIFYVLPVFNAAAAVAIESEIHRVRLMMTAGAGKKDDSSRK
TWRFVDLLRAAAFAGFVLLTFASCIAQTIVSSAASRWNYPSANAMLRMHE
IEDNLCTGNERRNGYVHIDVDSAMGGISQFVQESYDKKNSCWKWSYSKRE
DVEDLELKEFSHLVWNKAELEGFCVVHVENKFVGVDWRHRRIKSSPHTYV
HRNMNVSTAGCL*
back to top

mRNA from alignment at tig00000883_pilon:277605..279248+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9383.t1 ID=Ggra9383.t1|Name=Ggra9383.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1644bp|location=Sequence derived from alignment at tig00000883_pilon:277605..279248+ (Gracilaria gracilis GNS1m male)
ATGGACTTCATCTTTGTAGAGACTTTTCTCATGTTTGGCGTGATGCTTCT
GCATCTCGTTCTCACTCCGTTTACAAAGGTCGGGTACACGCCTCCCTTCA
TGAAATCCACTCAGAATTGGCGGTGGAGGCTCTAACTGACATGCCTTTCT
CCCACACTGCTCGTGAAATGACAACAAAGACAGGTAGAAGAGAGCTTTAA
CTTGCAGGCTATTTACGATTTATTGTATAAGTCCTGGACGAATGTAACCA
GCTTTGATCACACTGAATTTCCTGGAGCCGTTCCTCGTACTTTTTTGGGG
CCGGTCATTATCTCGCTACCGTCAATGATACCGAAAATGATGTTGAGAGC
CTCACCCTTTGCGATGCTTCACATTGTAAGAGGGGCTCTGGGGTCGTTGG
TTGTCCTATCACTGGTGAAAGTGCGAATTTCACTATCTCGCCGCTGTTCT
GGGCTGACGGGCCAGCTTTTCACTGCTCTTACTTTAACCCAGTTCCACAT
ATTATTCTACGCAAGCCGCAGCCTGCCCAATGTATATGCTCTTATTCTAA
CTAACCTCGCCTTGGCGTGTCAACTTGAACCAACCGCTACTAGAAGGCCT
TATCGAGCCATAACTCTCTTGTCTATGGCATGTGCCTTGTTTCGATCGGA
GCTTTGTTTGTACATATTCATGACAATGGTTGTAAATCTTGCTGCGGGGC
ACATTTCATTTATTCGCACAGTGATGTGTGGACTACAGACCGCAGTGATG
ACGGCGCTATGCTCTATTATTATCGATTCATACTTTTGGCAACGGTTAAG
TTATCCAGAATTGGAAGTATTCTACTTCAACGTGGTTCTCAACAAGAGTG
CAGCTTGGGGTACTCTTCCGTTTTTGTGGTACTTTTACAATGCACTCCCA
CGAGCACTTGGTGGTTCATACGTTCTCGGTCTGAAAGCTCTCGTGGCAGA
CAATGGAGGTCTGGGCACAATATTACTGCCTGCCCTTATGTTTGTGATTG
TCTATTCCATTCTACCTCACAAGGAACTGAGATTCATTTTTTATGTGCTG
CCTGTTTTCAATGCTGCTGCTGCTGTGGCGATCGAATCCGAGATTCATCG
GGTACGTCTCATGATGACAGCAGGGGCTGGGAAGAAGGATGACTCATCCA
GGAAGACGTGGAGATTTGTTGATCTTTTGCGAGCTGCTGCGTTTGCAGGA
TTCGTTTTGTTAACGTTTGCAAGCTGCATTGCTCAGACGATCGTTTCTTC
TGCCGCGTCACGATGGAATTATCCATCAGCAAACGCCATGTTGCGAATGC
ATGAAATTGAAGACAATCTATGCACAGGCAATGAACGACGTAACGGATAC
GTACATATTGACGTGGACTCGGCCATGGGCGGTATTTCGCAATTCGTGCA
GGAGTCTTATGATAAGAAAAACAGTTGTTGGAAGTGGAGCTACTCTAAAC
GGGAGGATGTAGAGGATCTTGAGTTGAAAGAATTTTCCCATCTGGTCTGG
AACAAGGCCGAATTGGAGGGTTTCTGTGTCGTTCATGTTGAGAACAAATT
CGTAGGTGTAGATTGGCGACATCGTCGGATAAAGAGTAGCCCACATACAT
ACGTGCATCGGAACATGAATGTGTCAACGGCGGGTTGTCTATGA
back to top

Coding sequence (CDS) from alignment at tig00000883_pilon:277605..279248+

>Ggra9383.t1 ID=Ggra9383.t1|Name=Ggra9383.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1539bp|location=Sequence derived from alignment at tig00000883_pilon:277605..279248+ (Gracilaria gracilis GNS1m male)
ATGGACTTCATCTTTGTAGAGACTTTTCTCATGTTTGGCGTGATGCTTCT
GCATCTCGTTCTCACTCCGTTTACAAAGGTAGAAGAGAGCTTTAACTTGC
AGGCTATTTACGATTTATTGTATAAGTCCTGGACGAATGTAACCAGCTTT
GATCACACTGAATTTCCTGGAGCCGTTCCTCGTACTTTTTTGGGGCCGGT
CATTATCTCGCTACCGTCAATGATACCGAAAATGATGTTGAGAGCCTCAC
CCTTTGCGATGCTTCACATTGTAAGAGGGGCTCTGGGGTCGTTGGTTGTC
CTATCACTGGTGAAAGTGCGAATTTCACTATCTCGCCGCTGTTCTGGGCT
GACGGGCCAGCTTTTCACTGCTCTTACTTTAACCCAGTTCCACATATTAT
TCTACGCAAGCCGCAGCCTGCCCAATGTATATGCTCTTATTCTAACTAAC
CTCGCCTTGGCGTGTCAACTTGAACCAACCGCTACTAGAAGGCCTTATCG
AGCCATAACTCTCTTGTCTATGGCATGTGCCTTGTTTCGATCGGAGCTTT
GTTTGTACATATTCATGACAATGGTTGTAAATCTTGCTGCGGGGCACATT
TCATTTATTCGCACAGTGATGTGTGGACTACAGACCGCAGTGATGACGGC
GCTATGCTCTATTATTATCGATTCATACTTTTGGCAACGGTTAAGTTATC
CAGAATTGGAAGTATTCTACTTCAACGTGGTTCTCAACAAGAGTGCAGCT
TGGGGTACTCTTCCGTTTTTGTGGTACTTTTACAATGCACTCCCACGAGC
ACTTGGTGGTTCATACGTTCTCGGTCTGAAAGCTCTCGTGGCAGACAATG
GAGGTCTGGGCACAATATTACTGCCTGCCCTTATGTTTGTGATTGTCTAT
TCCATTCTACCTCACAAGGAACTGAGATTCATTTTTTATGTGCTGCCTGT
TTTCAATGCTGCTGCTGCTGTGGCGATCGAATCCGAGATTCATCGGGTAC
GTCTCATGATGACAGCAGGGGCTGGGAAGAAGGATGACTCATCCAGGAAG
ACGTGGAGATTTGTTGATCTTTTGCGAGCTGCTGCGTTTGCAGGATTCGT
TTTGTTAACGTTTGCAAGCTGCATTGCTCAGACGATCGTTTCTTCTGCCG
CGTCACGATGGAATTATCCATCAGCAAACGCCATGTTGCGAATGCATGAA
ATTGAAGACAATCTATGCACAGGCAATGAACGACGTAACGGATACGTACA
TATTGACGTGGACTCGGCCATGGGCGGTATTTCGCAATTCGTGCAGGAGT
CTTATGATAAGAAAAACAGTTGTTGGAAGTGGAGCTACTCTAAACGGGAG
GATGTAGAGGATCTTGAGTTGAAAGAATTTTCCCATCTGGTCTGGAACAA
GGCCGAATTGGAGGGTTTCTGTGTCGTTCATGTTGAGAACAAATTCGTAG
GTGTAGATTGGCGACATCGTCGGATAAAGAGTAGCCCACATACATACGTG
CATCGGAACATGAATGTGTCAACGGCGGGTTGTCTATGA
back to top