Ggra9372.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9372.t1
Unique Name	Ggra9372.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	524

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000883_pilon	contig	tig00000883_pilon:114831..116402 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMN138CT
Preferred name	FIGNL1
PFAMs	AAA,Vps4_C
Max annot lvl	2759\|Eukaryota
GOs	GO:0000003,GO:0000018,GO:0000070,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000287,GO:0000819,GO:0001503,GO:0001649,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006163,GO:0006282,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007059,GO:0007140,GO:0007276,GO:0008150,GO:0008152,GO:0008283,GO:0008568,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009314,GO:0009611,GO:0009628,GO:0009966,GO:0009968,GO:0009987,GO:0010212,GO:0010569,GO:0010646,GO:0010648,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0019219,GO:0019222,GO:0019637,GO:0019693,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023057,GO:0030154,GO:0031110,GO:0031114,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032886,GO:0033043,GO:0033687,GO:0034641,GO:0042623,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043244,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046034,GO:0046483,GO:0046872,GO:0048232,GO:0048285,GO:0048471,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048609,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051013,GO:0051052,GO:0051128,GO:0051171,GO:0051276,GO:0051321,GO:0051493,GO:0051704,GO:0051716,GO:0051726,GO:0055086,GO:0060255,GO:0060548,GO:0065007,GO:0070013,GO:0070507,GO:0071214,GO:0071478,GO:0071479,GO:0071704,GO:0071840,GO:0072521,GO:0080090,GO:0080134,GO:0080135,GO:0098813,GO:0104004,GO:0140013,GO:0140014,GO:0140096,GO:1901135,GO:1901360,GO:1901564,GO:1901879,GO:1902531,GO:1902532,GO:1902903,GO:1903046,GO:1903047,GO:2000779,GO:2001020,GO:2001233,GO:2001234,GO:2001242,GO:2001243
Evalue	1.41e-130
EggNOG OGs	COG0464@1\|root,KOG0740@2759\|Eukaryota
Description	Belongs to the AAA ATPase family
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9372	Ggra9372	Gracilaria gracilis GNS1m male	gene	tig00000883_pilon 114831..116402 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9372.t1.start1	Ggra9372.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000883_pilon 114831..114833 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9372.t1.CDS1	Ggra9372.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000883_pilon 114831..116402 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9372.t1.exon1	Ggra9372.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000883_pilon 114831..116402 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9372.t1.stop1	Ggra9372.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000883_pilon 116400..116402 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9372.t1	Ggra9372.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000883_pilon 114831..116402 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000883_pilon:114831..116402+
coding sequence from alignment at tig00000883_pilon:114831..116402+

mRNA sequence

>Ggra9372.t1 ID=Ggra9372.t1|Name=Ggra9372.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=524bp
MQNQRYSRLVALNDTSLHMALDTLSISRSVASLPPRKRPTKPSDVFAPFN
YPPPATSIPIEQPSLFLTPLSNDVVATLLSAARAARADHQPLPPRAKHKL
LRRESAALTHAAPGAGTAEPCSAPPRKLLARRLSHPLLKSYPPAVNSTLA
TPFRSARSRLAVKRRQNEISSSLRDLAHTLQSVEMRSKRPRLSTDGEGAK
PIPEVPGAEPRFVELVTQEMLENCPNVQWDDIAGLEFAKACVKEAVIWPM
LRPDIFVGLRGPPKGLLLFGPPGTGKTMIGKAIASQSKAKFFNISASSLM
SKWIGDAEKTVRALFLTAKAMQPSVVFVDEIDSILTSRSENEHESSRRLK
TEFLVQMDGAGTSRDDRVLVVGATNRPQELDEAARRRLVKRLYIPLPDAA
ARKSLVRRLLEKQQGDDVKEDELEQVSKITDGYSGSDLYALCAEASLGPV
RELGDNIGSVDASSVRAIRKADFEQASRVVRASVGKHELKGYVQWNKTYG
SFSGVGENGKNVPGLESVNDMYI*

spliced messenger RNA

>Ggra9372.t1 ID=Ggra9372.t1|Name=Ggra9372.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1572bp|location=Sequence derived from alignment at tig00000883_pilon:114831..116402+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAAACCAGCGCTACTCGCGGCTCGTCGCGCTCAACGACACTTCTCT
GCACATGGCGCTGGACACGCTATCCATCTCGCGCTCCGTCGCGTCGCTGC
CGCCGCGCAAGCGGCCCACCAAGCCGTCGGATGTGTTCGCGCCGTTCAAC
TACCCGCCGCCGGCCACCAGCATTCCAATCGAGCAGCCGTCCTTGTTTCT
CACGCCGCTGTCCAACGACGTCGTCGCCACGCTGCTTTCGGCCGCGCGCG
CCGCGCGTGCGGACCATCAGCCCCTGCCTCCGCGCGCAAAGCACAAGCTG
CTTCGGCGCGAAAGCGCCGCCTTGACGCACGCCGCGCCGGGTGCGGGTAC
CGCCGAGCCGTGTTCTGCGCCGCCGCGCAAGCTGCTGGCTCGCCGCCTGT
CTCACCCGTTGCTCAAGTCGTACCCGCCTGCGGTCAACAGCACGTTGGCC
ACGCCGTTTCGTTCCGCAAGGTCGAGACTGGCTGTCAAGAGAAGGCAGAA
TGAGATTTCGTCCAGCCTTCGCGATCTCGCCCACACGCTGCAGAGCGTGG
AGATGCGCTCCAAGCGTCCACGATTGTCCACCGATGGAGAGGGAGCGAAG
CCCATCCCAGAGGTGCCTGGTGCCGAGCCTCGCTTTGTCGAACTCGTCAC
ACAGGAGATGTTGGAGAATTGTCCAAACGTTCAGTGGGATGATATTGCTG
GTCTGGAGTTTGCAAAGGCTTGCGTCAAGGAGGCTGTCATATGGCCGATG
TTAAGACCGGATATCTTTGTCGGCTTGAGAGGTCCTCCAAAGGGCTTGTT
ACTGTTCGGGCCTCCGGGCACTGGTAAAACCATGATTGGAAAGGCCATCG
CCTCGCAGTCCAAGGCCAAGTTCTTCAACATTAGCGCGTCGTCGTTGATG
TCAAAGTGGATTGGTGATGCTGAAAAGACTGTCAGGGCGCTGTTTCTCAC
CGCTAAAGCAATGCAACCTAGTGTGGTGTTTGTGGATGAGATTGACAGTA
TACTCACCTCAAGAAGTGAAAACGAACACGAGTCATCGAGAAGGTTGAAG
ACTGAATTTTTGGTTCAAATGGATGGAGCGGGTACCAGCAGAGATGACCG
TGTTCTAGTCGTTGGTGCCACAAATCGCCCCCAAGAGCTAGATGAAGCAG
CAAGAAGACGACTTGTCAAGCGGTTGTATATCCCCCTACCAGATGCGGCT
GCGCGAAAGAGTTTGGTACGGCGTTTGCTAGAAAAGCAGCAGGGTGATGA
TGTGAAGGAAGACGAATTGGAACAGGTTTCCAAGATCACTGACGGCTACT
CCGGAAGCGATTTGTATGCTTTGTGTGCAGAAGCATCGTTGGGGCCTGTT
CGAGAGCTGGGTGATAACATTGGAAGTGTTGACGCTTCAAGCGTTAGAGC
TATTCGTAAAGCGGATTTTGAACAGGCTTCAAGAGTTGTCAGAGCTAGTG
TTGGCAAGCATGAGTTGAAAGGTTATGTGCAGTGGAACAAAACATATGGA
TCGTTCTCGGGCGTCGGGGAGAACGGAAAGAACGTTCCTGGGCTTGAGTC
TGTGAACGACATGTACATTTAA

protein sequence of Ggra9372.t1

>Ggra9372.t1 ID=Ggra9372.t1|Name=Ggra9372.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=524bp
MQNQRYSRLVALNDTSLHMALDTLSISRSVASLPPRKRPTKPSDVFAPFN
YPPPATSIPIEQPSLFLTPLSNDVVATLLSAARAARADHQPLPPRAKHKL
LRRESAALTHAAPGAGTAEPCSAPPRKLLARRLSHPLLKSYPPAVNSTLA
TPFRSARSRLAVKRRQNEISSSLRDLAHTLQSVEMRSKRPRLSTDGEGAK
PIPEVPGAEPRFVELVTQEMLENCPNVQWDDIAGLEFAKACVKEAVIWPM
LRPDIFVGLRGPPKGLLLFGPPGTGKTMIGKAIASQSKAKFFNISASSLM
SKWIGDAEKTVRALFLTAKAMQPSVVFVDEIDSILTSRSENEHESSRRLK
TEFLVQMDGAGTSRDDRVLVVGATNRPQELDEAARRRLVKRLYIPLPDAA
ARKSLVRRLLEKQQGDDVKEDELEQVSKITDGYSGSDLYALCAEASLGPV
RELGDNIGSVDASSVRAIRKADFEQASRVVRASVGKHELKGYVQWNKTYG
SFSGVGENGKNVPGLESVNDMYI*

mRNA from alignment at tig00000883_pilon:114831..116402+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9372.t1 ID=Ggra9372.t1|Name=Ggra9372.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1572bp|location=Sequence derived from alignment at tig00000883_pilon:114831..116402+ (Gracilaria gracilis GNS1m male)
ATGCAAAACCAGCGCTACTCGCGGCTCGTCGCGCTCAACGACACTTCTCT
GCACATGGCGCTGGACACGCTATCCATCTCGCGCTCCGTCGCGTCGCTGC
CGCCGCGCAAGCGGCCCACCAAGCCGTCGGATGTGTTCGCGCCGTTCAAC
TACCCGCCGCCGGCCACCAGCATTCCAATCGAGCAGCCGTCCTTGTTTCT
CACGCCGCTGTCCAACGACGTCGTCGCCACGCTGCTTTCGGCCGCGCGCG
CCGCGCGTGCGGACCATCAGCCCCTGCCTCCGCGCGCAAAGCACAAGCTG
CTTCGGCGCGAAAGCGCCGCCTTGACGCACGCCGCGCCGGGTGCGGGTAC
CGCCGAGCCGTGTTCTGCGCCGCCGCGCAAGCTGCTGGCTCGCCGCCTGT
CTCACCCGTTGCTCAAGTCGTACCCGCCTGCGGTCAACAGCACGTTGGCC
ACGCCGTTTCGTTCCGCAAGGTCGAGACTGGCTGTCAAGAGAAGGCAGAA
TGAGATTTCGTCCAGCCTTCGCGATCTCGCCCACACGCTGCAGAGCGTGG
AGATGCGCTCCAAGCGTCCACGATTGTCCACCGATGGAGAGGGAGCGAAG
CCCATCCCAGAGGTGCCTGGTGCCGAGCCTCGCTTTGTCGAACTCGTCAC
ACAGGAGATGTTGGAGAATTGTCCAAACGTTCAGTGGGATGATATTGCTG
GTCTGGAGTTTGCAAAGGCTTGCGTCAAGGAGGCTGTCATATGGCCGATG
TTAAGACCGGATATCTTTGTCGGCTTGAGAGGTCCTCCAAAGGGCTTGTT
ACTGTTCGGGCCTCCGGGCACTGGTAAAACCATGATTGGAAAGGCCATCG
CCTCGCAGTCCAAGGCCAAGTTCTTCAACATTAGCGCGTCGTCGTTGATG
TCAAAGTGGATTGGTGATGCTGAAAAGACTGTCAGGGCGCTGTTTCTCAC
CGCTAAAGCAATGCAACCTAGTGTGGTGTTTGTGGATGAGATTGACAGTA
TACTCACCTCAAGAAGTGAAAACGAACACGAGTCATCGAGAAGGTTGAAG
ACTGAATTTTTGGTTCAAATGGATGGAGCGGGTACCAGCAGAGATGACCG
TGTTCTAGTCGTTGGTGCCACAAATCGCCCCCAAGAGCTAGATGAAGCAG
CAAGAAGACGACTTGTCAAGCGGTTGTATATCCCCCTACCAGATGCGGCT
GCGCGAAAGAGTTTGGTACGGCGTTTGCTAGAAAAGCAGCAGGGTGATGA
TGTGAAGGAAGACGAATTGGAACAGGTTTCCAAGATCACTGACGGCTACT
CCGGAAGCGATTTGTATGCTTTGTGTGCAGAAGCATCGTTGGGGCCTGTT
CGAGAGCTGGGTGATAACATTGGAAGTGTTGACGCTTCAAGCGTTAGAGC
TATTCGTAAAGCGGATTTTGAACAGGCTTCAAGAGTTGTCAGAGCTAGTG
TTGGCAAGCATGAGTTGAAAGGTTATGTGCAGTGGAACAAAACATATGGA
TCGTTCTCGGGCGTCGGGGAGAACGGAAAGAACGTTCCTGGGCTTGAGTC
TGTGAACGACATGTACATTTAA

Coding sequence (CDS) from alignment at tig00000883_pilon:114831..116402+

>Ggra9372.t1 ID=Ggra9372.t1|Name=Ggra9372.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1572bp|location=Sequence derived from alignment at tig00000883_pilon:114831..116402+ (Gracilaria gracilis GNS1m male)
ATGCAAAACCAGCGCTACTCGCGGCTCGTCGCGCTCAACGACACTTCTCT
GCACATGGCGCTGGACACGCTATCCATCTCGCGCTCCGTCGCGTCGCTGC
CGCCGCGCAAGCGGCCCACCAAGCCGTCGGATGTGTTCGCGCCGTTCAAC
TACCCGCCGCCGGCCACCAGCATTCCAATCGAGCAGCCGTCCTTGTTTCT
CACGCCGCTGTCCAACGACGTCGTCGCCACGCTGCTTTCGGCCGCGCGCG
CCGCGCGTGCGGACCATCAGCCCCTGCCTCCGCGCGCAAAGCACAAGCTG
CTTCGGCGCGAAAGCGCCGCCTTGACGCACGCCGCGCCGGGTGCGGGTAC
CGCCGAGCCGTGTTCTGCGCCGCCGCGCAAGCTGCTGGCTCGCCGCCTGT
CTCACCCGTTGCTCAAGTCGTACCCGCCTGCGGTCAACAGCACGTTGGCC
ACGCCGTTTCGTTCCGCAAGGTCGAGACTGGCTGTCAAGAGAAGGCAGAA
TGAGATTTCGTCCAGCCTTCGCGATCTCGCCCACACGCTGCAGAGCGTGG
AGATGCGCTCCAAGCGTCCACGATTGTCCACCGATGGAGAGGGAGCGAAG
CCCATCCCAGAGGTGCCTGGTGCCGAGCCTCGCTTTGTCGAACTCGTCAC
ACAGGAGATGTTGGAGAATTGTCCAAACGTTCAGTGGGATGATATTGCTG
GTCTGGAGTTTGCAAAGGCTTGCGTCAAGGAGGCTGTCATATGGCCGATG
TTAAGACCGGATATCTTTGTCGGCTTGAGAGGTCCTCCAAAGGGCTTGTT
ACTGTTCGGGCCTCCGGGCACTGGTAAAACCATGATTGGAAAGGCCATCG
CCTCGCAGTCCAAGGCCAAGTTCTTCAACATTAGCGCGTCGTCGTTGATG
TCAAAGTGGATTGGTGATGCTGAAAAGACTGTCAGGGCGCTGTTTCTCAC
CGCTAAAGCAATGCAACCTAGTGTGGTGTTTGTGGATGAGATTGACAGTA
TACTCACCTCAAGAAGTGAAAACGAACACGAGTCATCGAGAAGGTTGAAG
ACTGAATTTTTGGTTCAAATGGATGGAGCGGGTACCAGCAGAGATGACCG
TGTTCTAGTCGTTGGTGCCACAAATCGCCCCCAAGAGCTAGATGAAGCAG
CAAGAAGACGACTTGTCAAGCGGTTGTATATCCCCCTACCAGATGCGGCT
GCGCGAAAGAGTTTGGTACGGCGTTTGCTAGAAAAGCAGCAGGGTGATGA
TGTGAAGGAAGACGAATTGGAACAGGTTTCCAAGATCACTGACGGCTACT
CCGGAAGCGATTTGTATGCTTTGTGTGCAGAAGCATCGTTGGGGCCTGTT
CGAGAGCTGGGTGATAACATTGGAAGTGTTGACGCTTCAAGCGTTAGAGC
TATTCGTAAAGCGGATTTTGAACAGGCTTCAAGAGTTGTCAGAGCTAGTG
TTGGCAAGCATGAGTTGAAAGGTTATGTGCAGTGGAACAAAACATATGGA
TCGTTCTCGGGCGTCGGGGAGAACGGAAAGAACGTTCCTGGGCTTGAGTC
TGTGAACGACATGTACATTTAA