Ggra9389.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra9389.t1
Unique Name	Ggra9389.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	193

Homology

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BLAST of Ggra9389.t1 vs. uniprot
Match: A0A2V3ISN9 (C2H2-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISN9_9FLOR)

HSP 1 Score: 137 bits (344), Expect = 1.710e-37
Identity = 82/186 (44.09%), Postives = 115/186 (61.83%), Query Frame = 0

Query:    8 EIVAMLEKLSTQVQQATTDSSPHLDHVLSDAIHATSDLLKSSLPETVSGPWLQELSRFSGEPKRDSSLEKEEKEPSSKEDRPHRNASNGSIHVFAPRDSNSTTAGKLNDGPEQTTCACGTLLSISSMSNDGSQGKH-VTCVHGCGCLFHSAKCRRKYSQAHAHDCAALQRKKILKRIGLSADPDLF 192
            +++A+LE+LS+QVQQ    S   LDHVL +AIH T+ L++S+LP+ V  PWL +LS  +  P + S+       P +K   P   AS   IHVF P  + S+++      P+Q  C CG      ++++     KH V CVH CG +FHSA CRRK+++ HA +C ALQR KILK+IGLS DP+LF
Sbjct:   12 QLIAVLEQLSSQVQQTAQSSPAQLDHVLHNAIHETAHLIQSTLPDHVGTPWLNQLSDLA--PTQPSA-----NNPHAKPPAPSEKASQ-KIHVFTPPPAQSSSSESQPSSPQQR-CPCG-----MAVTDAAQHVKHPVECVHACGRVFHSATCRRKHTRQHARECPALQRNKILKQIGLSPDPELF 183

The following BLAST results are available for this feature:

BLAST of Ggra9389.t1 vs. uniprot

BLAST of Ggra9389.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3ISN9	1.710e-37	44.09	C2H2-type domain-containing protein n=1 Tax=Gracil...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..93

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000883_pilon	contig	tig00000883_pilon:290435..291013 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9389.t1	Ggra9389.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000883_pilon 290435..291013 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra9389.t1 ID=Ggra9389.t1|Name=Ggra9389.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=193bp
MSSAEELEIVAMLEKLSTQVQQATTDSSPHLDHVLSDAIHATSDLLKSSL
PETVSGPWLQELSRFSGEPKRDSSLEKEEKEPSSKEDRPHRNASNGSIHV
FAPRDSNSTTAGKLNDGPEQTTCACGTLLSISSMSNDGSQGKHVTCVHGC
GCLFHSAKCRRKYSQAHAHDCAALQRKKILKRIGLSADPDLF*