Ggra9390.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9390.t1
Unique Name	Ggra9390.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	545

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000883_pilon	contig	tig00000883_pilon:291631..293265 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	498848.TaqDRAFT_4393
PFAMs	Inhibitor_I9,Peptidase_S8
Max annot lvl	1297\|Deinococcus-Thermus
KEGG ko	ko:K20754
Evalue	1.77e-49
EggNOG OGs	COG1404@1\|root,COG1404@2\|Bacteria,1WIDU@1297\|Deinococcus-Thermus
EC	3.4.21.111
Description	peptidase S8 and S53, subtilisin, kexin, sedolisin
COG category	O
BRITE	ko00000,ko01000,ko01002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9390	Ggra9390	Gracilaria gracilis GNS1m male	gene	tig00000883_pilon 291631..293265 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9390.t1.start1	Ggra9390.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000883_pilon 291631..291633 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9390.t1.CDS1	Ggra9390.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000883_pilon 291631..293265 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9390.t1.exon1	Ggra9390.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000883_pilon 291631..293265 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9390.t1.stop1	Ggra9390.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000883_pilon 293263..293265 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9390.t1	Ggra9390.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000883_pilon 291631..293265 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000883_pilon:291631..293265+
coding sequence from alignment at tig00000883_pilon:291631..293265+

mRNA sequence

>Ggra9390.t1 ID=Ggra9390.t1|Name=Ggra9390.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=545bp
MRILPLLFAALIGVALAVSKGYVRKRFIVSLKPQNECDHTCVEAVKKSIV
RLTYEGKSAQCEILRHNVHLGMIAVRCDCVRSDTTAMLINDKLQQIDGVL
YSSQDVILTTAPTDSNAQEANRDGPDTPMFIPASREIVPEGFSPYNWGLD
RIDQEEVNLDKLPTDYSCYPKRGQGVRVFVIDTGCRVDHNEFASLDITTE
KAPGSRFANGDDDNGHGTHIAAVIGGANVGIARDASVTCIKAFDKLGNGI
ATDTIAAVEYIIEEKAKNNSVPFIVNLSYSALTGFTATPLDEIVYSSSAR
GIVFVVSAGNSAVNSCFFSPSKAKQAFTVTAGTKHDTLEMDSNIGPCVEF
IAPGHEIVSAGINSQADYESMNGTSMATPHVAGLSALVLAENMDLQASPD
IVRDSLYNLLLTRTSDVGTFLMPLMSVGCSASQSEINTPRLNGHGKRNVE
IVVESFDSSPKATFEPLETLEPLLEEREDEENLTPSMEPEEEGVPAAPVT
FVTSSSQAEWKEGSTVTPVPEEGNRDGNEPDIMVQLVEWIQNNS*

spliced messenger RNA

>Ggra9390.t1 ID=Ggra9390.t1|Name=Ggra9390.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1635bp|location=Sequence derived from alignment at tig00000883_pilon:291631..293265+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGATTCTGCCTTTACTGTTCGCGGCTCTAATTGGAGTCGCCCTGGC
TGTATCGAAAGGATATGTCCGAAAGCGTTTTATAGTCTCGCTGAAACCTC
AAAATGAATGTGACCATACTTGTGTTGAGGCCGTGAAGAAGAGTATCGTT
CGCTTAACTTATGAAGGAAAATCGGCTCAGTGTGAGATCCTTCGACACAA
TGTGCACTTGGGCATGATCGCCGTGCGCTGCGATTGCGTTCGCAGTGATA
CTACGGCAATGCTCATCAACGACAAGCTGCAGCAAATTGACGGTGTTCTA
TACTCATCTCAAGATGTGATTCTCACTACAGCTCCAACTGATTCCAACGC
ACAAGAGGCAAACAGGGATGGTCCTGATACCCCCATGTTTATTCCAGCTT
CGAGAGAGATCGTTCCCGAGGGTTTCTCACCGTACAACTGGGGGTTGGAC
CGGATTGATCAAGAAGAGGTAAACCTGGACAAGCTCCCCACCGATTACTC
ATGCTACCCAAAGAGGGGGCAAGGAGTTCGTGTATTCGTCATTGATACTG
GCTGCCGTGTAGATCATAACGAGTTCGCCAGTCTTGATATCACGACAGAG
AAAGCACCCGGAAGCAGATTTGCTAATGGAGACGATGACAATGGTCATGG
GACCCATATCGCAGCAGTAATCGGCGGAGCGAATGTTGGTATTGCTAGAG
ACGCTTCTGTCACTTGCATTAAAGCGTTCGACAAGCTTGGTAATGGAATT
GCAACGGACACAATCGCAGCAGTAGAGTACATCATTGAAGAGAAGGCTAA
GAATAATTCCGTGCCATTCATTGTGAATTTGAGTTACTCTGCTCTAACTG
GCTTCACGGCCACACCTCTCGATGAGATTGTGTACTCATCTTCGGCCCGC
GGAATCGTTTTCGTTGTTTCTGCTGGCAATTCTGCCGTGAACTCTTGCTT
CTTCAGTCCCTCGAAAGCAAAACAAGCGTTTACTGTCACAGCCGGTACGA
AGCACGACACACTAGAAATGGACAGCAACATCGGTCCGTGCGTTGAGTTT
ATCGCTCCTGGGCATGAGATTGTGAGCGCTGGTATCAATTCCCAAGCGGA
TTACGAATCGATGAACGGGACATCTATGGCAACTCCTCACGTTGCAGGGC
TTTCCGCTCTTGTGCTTGCTGAAAACATGGATCTGCAAGCCTCTCCGGAC
ATTGTGCGTGACTCTCTGTACAATTTGCTTCTCACTAGAACCTCGGATGT
GGGGACCTTCCTCATGCCGCTCATGAGTGTTGGCTGCAGCGCATCGCAGA
GCGAAATAAATACTCCTCGCTTGAATGGTCATGGAAAGCGCAACGTGGAA
ATTGTGGTCGAGTCATTCGATTCCTCGCCAAAAGCGACTTTCGAGCCGCT
TGAAACGTTGGAACCATTGCTCGAGGAGAGAGAAGATGAGGAAAATCTAA
CCCCTTCAATGGAACCCGAAGAAGAAGGAGTTCCAGCTGCGCCAGTTACG
TTTGTGACATCGTCATCCCAAGCCGAGTGGAAAGAAGGGAGCACCGTTAC
ACCAGTACCGGAAGAAGGCAACCGGGATGGTAATGAGCCAGATATCATGG
TGCAATTGGTGGAATGGATCCAAAACAACAGTTAG

protein sequence of Ggra9390.t1

>Ggra9390.t1 ID=Ggra9390.t1|Name=Ggra9390.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=545bp
MRILPLLFAALIGVALAVSKGYVRKRFIVSLKPQNECDHTCVEAVKKSIV
RLTYEGKSAQCEILRHNVHLGMIAVRCDCVRSDTTAMLINDKLQQIDGVL
YSSQDVILTTAPTDSNAQEANRDGPDTPMFIPASREIVPEGFSPYNWGLD
RIDQEEVNLDKLPTDYSCYPKRGQGVRVFVIDTGCRVDHNEFASLDITTE
KAPGSRFANGDDDNGHGTHIAAVIGGANVGIARDASVTCIKAFDKLGNGI
ATDTIAAVEYIIEEKAKNNSVPFIVNLSYSALTGFTATPLDEIVYSSSAR
GIVFVVSAGNSAVNSCFFSPSKAKQAFTVTAGTKHDTLEMDSNIGPCVEF
IAPGHEIVSAGINSQADYESMNGTSMATPHVAGLSALVLAENMDLQASPD
IVRDSLYNLLLTRTSDVGTFLMPLMSVGCSASQSEINTPRLNGHGKRNVE
IVVESFDSSPKATFEPLETLEPLLEEREDEENLTPSMEPEEEGVPAAPVT
FVTSSSQAEWKEGSTVTPVPEEGNRDGNEPDIMVQLVEWIQNNS*

mRNA from alignment at tig00000883_pilon:291631..293265+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9390.t1 ID=Ggra9390.t1|Name=Ggra9390.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1635bp|location=Sequence derived from alignment at tig00000883_pilon:291631..293265+ (Gracilaria gracilis GNS1m male)
ATGCGGATTCTGCCTTTACTGTTCGCGGCTCTAATTGGAGTCGCCCTGGC
TGTATCGAAAGGATATGTCCGAAAGCGTTTTATAGTCTCGCTGAAACCTC
AAAATGAATGTGACCATACTTGTGTTGAGGCCGTGAAGAAGAGTATCGTT
CGCTTAACTTATGAAGGAAAATCGGCTCAGTGTGAGATCCTTCGACACAA
TGTGCACTTGGGCATGATCGCCGTGCGCTGCGATTGCGTTCGCAGTGATA
CTACGGCAATGCTCATCAACGACAAGCTGCAGCAAATTGACGGTGTTCTA
TACTCATCTCAAGATGTGATTCTCACTACAGCTCCAACTGATTCCAACGC
ACAAGAGGCAAACAGGGATGGTCCTGATACCCCCATGTTTATTCCAGCTT
CGAGAGAGATCGTTCCCGAGGGTTTCTCACCGTACAACTGGGGGTTGGAC
CGGATTGATCAAGAAGAGGTAAACCTGGACAAGCTCCCCACCGATTACTC
ATGCTACCCAAAGAGGGGGCAAGGAGTTCGTGTATTCGTCATTGATACTG
GCTGCCGTGTAGATCATAACGAGTTCGCCAGTCTTGATATCACGACAGAG
AAAGCACCCGGAAGCAGATTTGCTAATGGAGACGATGACAATGGTCATGG
GACCCATATCGCAGCAGTAATCGGCGGAGCGAATGTTGGTATTGCTAGAG
ACGCTTCTGTCACTTGCATTAAAGCGTTCGACAAGCTTGGTAATGGAATT
GCAACGGACACAATCGCAGCAGTAGAGTACATCATTGAAGAGAAGGCTAA
GAATAATTCCGTGCCATTCATTGTGAATTTGAGTTACTCTGCTCTAACTG
GCTTCACGGCCACACCTCTCGATGAGATTGTGTACTCATCTTCGGCCCGC
GGAATCGTTTTCGTTGTTTCTGCTGGCAATTCTGCCGTGAACTCTTGCTT
CTTCAGTCCCTCGAAAGCAAAACAAGCGTTTACTGTCACAGCCGGTACGA
AGCACGACACACTAGAAATGGACAGCAACATCGGTCCGTGCGTTGAGTTT
ATCGCTCCTGGGCATGAGATTGTGAGCGCTGGTATCAATTCCCAAGCGGA
TTACGAATCGATGAACGGGACATCTATGGCAACTCCTCACGTTGCAGGGC
TTTCCGCTCTTGTGCTTGCTGAAAACATGGATCTGCAAGCCTCTCCGGAC
ATTGTGCGTGACTCTCTGTACAATTTGCTTCTCACTAGAACCTCGGATGT
GGGGACCTTCCTCATGCCGCTCATGAGTGTTGGCTGCAGCGCATCGCAGA
GCGAAATAAATACTCCTCGCTTGAATGGTCATGGAAAGCGCAACGTGGAA
ATTGTGGTCGAGTCATTCGATTCCTCGCCAAAAGCGACTTTCGAGCCGCT
TGAAACGTTGGAACCATTGCTCGAGGAGAGAGAAGATGAGGAAAATCTAA
CCCCTTCAATGGAACCCGAAGAAGAAGGAGTTCCAGCTGCGCCAGTTACG
TTTGTGACATCGTCATCCCAAGCCGAGTGGAAAGAAGGGAGCACCGTTAC
ACCAGTACCGGAAGAAGGCAACCGGGATGGTAATGAGCCAGATATCATGG
TGCAATTGGTGGAATGGATCCAAAACAACAGTTAG

Coding sequence (CDS) from alignment at tig00000883_pilon:291631..293265+

>Ggra9390.t1 ID=Ggra9390.t1|Name=Ggra9390.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1635bp|location=Sequence derived from alignment at tig00000883_pilon:291631..293265+ (Gracilaria gracilis GNS1m male)
ATGCGGATTCTGCCTTTACTGTTCGCGGCTCTAATTGGAGTCGCCCTGGC
TGTATCGAAAGGATATGTCCGAAAGCGTTTTATAGTCTCGCTGAAACCTC
AAAATGAATGTGACCATACTTGTGTTGAGGCCGTGAAGAAGAGTATCGTT
CGCTTAACTTATGAAGGAAAATCGGCTCAGTGTGAGATCCTTCGACACAA
TGTGCACTTGGGCATGATCGCCGTGCGCTGCGATTGCGTTCGCAGTGATA
CTACGGCAATGCTCATCAACGACAAGCTGCAGCAAATTGACGGTGTTCTA
TACTCATCTCAAGATGTGATTCTCACTACAGCTCCAACTGATTCCAACGC
ACAAGAGGCAAACAGGGATGGTCCTGATACCCCCATGTTTATTCCAGCTT
CGAGAGAGATCGTTCCCGAGGGTTTCTCACCGTACAACTGGGGGTTGGAC
CGGATTGATCAAGAAGAGGTAAACCTGGACAAGCTCCCCACCGATTACTC
ATGCTACCCAAAGAGGGGGCAAGGAGTTCGTGTATTCGTCATTGATACTG
GCTGCCGTGTAGATCATAACGAGTTCGCCAGTCTTGATATCACGACAGAG
AAAGCACCCGGAAGCAGATTTGCTAATGGAGACGATGACAATGGTCATGG
GACCCATATCGCAGCAGTAATCGGCGGAGCGAATGTTGGTATTGCTAGAG
ACGCTTCTGTCACTTGCATTAAAGCGTTCGACAAGCTTGGTAATGGAATT
GCAACGGACACAATCGCAGCAGTAGAGTACATCATTGAAGAGAAGGCTAA
GAATAATTCCGTGCCATTCATTGTGAATTTGAGTTACTCTGCTCTAACTG
GCTTCACGGCCACACCTCTCGATGAGATTGTGTACTCATCTTCGGCCCGC
GGAATCGTTTTCGTTGTTTCTGCTGGCAATTCTGCCGTGAACTCTTGCTT
CTTCAGTCCCTCGAAAGCAAAACAAGCGTTTACTGTCACAGCCGGTACGA
AGCACGACACACTAGAAATGGACAGCAACATCGGTCCGTGCGTTGAGTTT
ATCGCTCCTGGGCATGAGATTGTGAGCGCTGGTATCAATTCCCAAGCGGA
TTACGAATCGATGAACGGGACATCTATGGCAACTCCTCACGTTGCAGGGC
TTTCCGCTCTTGTGCTTGCTGAAAACATGGATCTGCAAGCCTCTCCGGAC
ATTGTGCGTGACTCTCTGTACAATTTGCTTCTCACTAGAACCTCGGATGT
GGGGACCTTCCTCATGCCGCTCATGAGTGTTGGCTGCAGCGCATCGCAGA
GCGAAATAAATACTCCTCGCTTGAATGGTCATGGAAAGCGCAACGTGGAA
ATTGTGGTCGAGTCATTCGATTCCTCGCCAAAAGCGACTTTCGAGCCGCT
TGAAACGTTGGAACCATTGCTCGAGGAGAGAGAAGATGAGGAAAATCTAA
CCCCTTCAATGGAACCCGAAGAAGAAGGAGTTCCAGCTGCGCCAGTTACG
TTTGTGACATCGTCATCCCAAGCCGAGTGGAAAGAAGGGAGCACCGTTAC
ACCAGTACCGGAAGAAGGCAACCGGGATGGTAATGAGCCAGATATCATGG
TGCAATTGGTGGAATGGATCCAAAACAACAGTTAG