Ggra9358.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9358.t1
Unique NameGgra9358.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length556
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:83114..84781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog37727.XP_002148140.1
Preferred nameAFG2
PFAMsAAA
Max annot lvl4751|Fungi
KEGG koko:K14575
KEGG Pathwayko03008,map03008
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0008144,GO:0008150,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022613,GO:0030554,GO:0030684,GO:0030687,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0036094,GO:0042221,GO:0042254,GO:0042273,GO:0042493,GO:0043167,GO:0043168,GO:0044085,GO:0044464,GO:0050896,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1990904
Evalue1.65e-26
EggNOG OGsCOG0464@1|root,KOG0730@2759|Eukaryota,38CYE@33154|Opisthokonta,3NW8H@4751|Fungi,3QP4H@4890|Ascomycota,20B04@147545|Eurotiomycetes,3S2SJ@5042|Eurotiales
DescriptionAAA family ATPase
COG categoryO
BRITEko00000,ko00001,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9358Ggra9358Gracilaria gracilis GNS1m malegenetig00000883_pilon 83114..84781 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9358.t1.stop1Ggra9358.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 83114..83116 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9358.t1.CDS1Ggra9358.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 83114..84781 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9358.t1.exon1Ggra9358.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 83114..84781 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9358.t1.start1Ggra9358.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 84779..84781 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9358.t1Ggra9358.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 83114..84781 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9358.t1 ID=Ggra9358.t1|Name=Ggra9358.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=556bp
MKPVAEQKHVKWSISCVQQQAYDKLRHFVLHSDEYPKAAVIHGPPGCGKS
SLCRRFAQDHGYQVRVLGFKQLADDDSGVVEHTIMHVFRSCMAQRTERTA
IVIDELDIWAPKRVKSAWALRLIGALSDALEELGEEKLRSVVVLTTCCAL
GDVHGLLVRRGKLGCTVALSALSFDDRARLCCEWMMRVRGGDTREQECRN
EAVYMASVTAGFMVADMMALLWRLEDGRSLRARMADGEESANKLAEWREL
RETVRVVRPSLLAANSDMVRDTMHARKLGSGNLPEEEDAVLYGLHGAEKY
LSDCLRAVFGSIGNSNSSSSSSSSSTAVNEAAQQSARALQRIGAFRGVLL
HGASGCGKTALLKRAVRALRSGGVNTLVVDSTSVVSSVVGEGERKLSHAF
WLARTLAPSVLVLENVDNVAPRRAAAAASSSSSSSAAAFNRLLSTLLVEL
DGVASRAEAVAAPLLLLASTRDVALVDAALLRPGRLDVHIGVRAPDARAR
ERIFIAECARLRVAPSPAQLRVAREGGAALPSGAHVRQLAHALRARRRNA
SAERR*
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spliced messenger RNA

>Ggra9358.t1 ID=Ggra9358.t1|Name=Ggra9358.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1668bp|location=Sequence derived from alignment at tig00000883_pilon:83114..84781- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCTGTCGCAGAACAAAAGCATGTCAAATGGTCCATCTCGTGCGT
ACAGCAACAAGCGTACGACAAACTGCGCCACTTTGTGCTGCACTCGGATG
AGTACCCCAAGGCGGCCGTGATCCACGGCCCTCCCGGCTGCGGAAAGAGC
TCGCTCTGCCGACGCTTTGCGCAGGACCACGGCTACCAAGTGCGCGTGCT
AGGATTCAAGCAGCTCGCGGACGACGATTCCGGCGTGGTGGAGCACACCA
TCATGCACGTGTTCCGCAGCTGCATGGCGCAGCGCACGGAACGCACGGCG
ATCGTGATTGACGAGCTGGACATTTGGGCGCCGAAGCGCGTGAAATCGGC
GTGGGCTTTGAGGCTGATCGGCGCGTTGAGCGACGCGCTGGAAGAATTGG
GCGAAGAAAAGTTGCGCTCAGTGGTGGTGCTGACGACTTGCTGCGCGCTG
GGCGACGTGCACGGCTTGCTTGTTCGGCGAGGAAAGCTGGGATGCACGGT
TGCGTTGAGCGCGCTGTCGTTCGACGACAGGGCGCGGCTATGTTGTGAGT
GGATGATGCGCGTGCGTGGAGGGGACACGCGTGAGCAAGAGTGCAGAAAT
GAGGCGGTTTACATGGCGAGCGTAACGGCGGGCTTCATGGTGGCGGACAT
GATGGCGCTTCTGTGGCGTCTGGAGGACGGACGTTCACTGCGCGCACGCA
TGGCGGACGGCGAGGAAAGCGCGAACAAGTTGGCAGAGTGGCGCGAATTG
AGAGAGACGGTGCGCGTGGTGCGCCCTTCACTATTGGCAGCTAACAGCGA
CATGGTGCGCGACACAATGCACGCGCGGAAACTGGGCAGCGGCAACTTGC
CAGAAGAGGAAGACGCGGTGCTGTACGGACTGCATGGCGCAGAGAAATAT
CTCAGCGACTGCCTGCGCGCTGTGTTCGGCAGCATCGGCAACAGCAACAG
CAGCAGCAGCAGCAGCAGCAGCAGCACGGCGGTCAACGAGGCGGCGCAGC
AAAGCGCGCGCGCGCTACAGCGCATCGGCGCGTTCCGCGGCGTGCTGCTG
CACGGCGCGAGCGGCTGCGGCAAGACGGCGCTGCTCAAGCGCGCGGTGCG
CGCACTGCGCAGCGGCGGCGTGAACACGCTGGTGGTGGACAGCACCAGCG
TGGTAAGCAGCGTGGTGGGCGAAGGCGAGCGCAAGCTCAGCCACGCCTTC
TGGCTGGCGCGCACGCTAGCGCCCAGCGTGCTGGTGCTGGAGAACGTGGA
CAACGTCGCGCCGCGCCGCGCCGCCGCCGCCGCCAGCAGCAGCAGCAGCA
GCAGCGCCGCCGCGTTCAACCGCCTGCTCAGCACGCTGCTGGTCGAGCTG
GACGGCGTGGCGTCTCGCGCCGAAGCCGTCGCCGCGCCGCTGCTGCTGCT
CGCCTCCACGCGCGACGTCGCGCTCGTCGACGCCGCGCTGCTGCGCCCCG
GCCGGCTCGACGTGCACATCGGCGTGCGCGCGCCCGACGCGCGCGCGCGT
GAGCGCATCTTCATCGCCGAGTGCGCCCGGCTGCGCGTGGCGCCGTCGCC
GGCGCAGCTGCGCGTCGCGCGCGAAGGCGGCGCCGCGCTGCCGTCCGGCG
CGCACGTGCGGCAGCTGGCGCACGCGCTGCGCGCGCGTCGTCGAAACGCA
AGCGCGGAGAGAAGATGA
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protein sequence of Ggra9358.t1

>Ggra9358.t1 ID=Ggra9358.t1|Name=Ggra9358.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=556bp
MKPVAEQKHVKWSISCVQQQAYDKLRHFVLHSDEYPKAAVIHGPPGCGKS
SLCRRFAQDHGYQVRVLGFKQLADDDSGVVEHTIMHVFRSCMAQRTERTA
IVIDELDIWAPKRVKSAWALRLIGALSDALEELGEEKLRSVVVLTTCCAL
GDVHGLLVRRGKLGCTVALSALSFDDRARLCCEWMMRVRGGDTREQECRN
EAVYMASVTAGFMVADMMALLWRLEDGRSLRARMADGEESANKLAEWREL
RETVRVVRPSLLAANSDMVRDTMHARKLGSGNLPEEEDAVLYGLHGAEKY
LSDCLRAVFGSIGNSNSSSSSSSSSTAVNEAAQQSARALQRIGAFRGVLL
HGASGCGKTALLKRAVRALRSGGVNTLVVDSTSVVSSVVGEGERKLSHAF
WLARTLAPSVLVLENVDNVAPRRAAAAASSSSSSSAAAFNRLLSTLLVEL
DGVASRAEAVAAPLLLLASTRDVALVDAALLRPGRLDVHIGVRAPDARAR
ERIFIAECARLRVAPSPAQLRVAREGGAALPSGAHVRQLAHALRARRRNA
SAERR*
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mRNA from alignment at tig00000883_pilon:83114..84781-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9358.t1 ID=Ggra9358.t1|Name=Ggra9358.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1668bp|location=Sequence derived from alignment at tig00000883_pilon:83114..84781- (Gracilaria gracilis GNS1m male)
ATGAAGCCTGTCGCAGAACAAAAGCATGTCAAATGGTCCATCTCGTGCGT
ACAGCAACAAGCGTACGACAAACTGCGCCACTTTGTGCTGCACTCGGATG
AGTACCCCAAGGCGGCCGTGATCCACGGCCCTCCCGGCTGCGGAAAGAGC
TCGCTCTGCCGACGCTTTGCGCAGGACCACGGCTACCAAGTGCGCGTGCT
AGGATTCAAGCAGCTCGCGGACGACGATTCCGGCGTGGTGGAGCACACCA
TCATGCACGTGTTCCGCAGCTGCATGGCGCAGCGCACGGAACGCACGGCG
ATCGTGATTGACGAGCTGGACATTTGGGCGCCGAAGCGCGTGAAATCGGC
GTGGGCTTTGAGGCTGATCGGCGCGTTGAGCGACGCGCTGGAAGAATTGG
GCGAAGAAAAGTTGCGCTCAGTGGTGGTGCTGACGACTTGCTGCGCGCTG
GGCGACGTGCACGGCTTGCTTGTTCGGCGAGGAAAGCTGGGATGCACGGT
TGCGTTGAGCGCGCTGTCGTTCGACGACAGGGCGCGGCTATGTTGTGAGT
GGATGATGCGCGTGCGTGGAGGGGACACGCGTGAGCAAGAGTGCAGAAAT
GAGGCGGTTTACATGGCGAGCGTAACGGCGGGCTTCATGGTGGCGGACAT
GATGGCGCTTCTGTGGCGTCTGGAGGACGGACGTTCACTGCGCGCACGCA
TGGCGGACGGCGAGGAAAGCGCGAACAAGTTGGCAGAGTGGCGCGAATTG
AGAGAGACGGTGCGCGTGGTGCGCCCTTCACTATTGGCAGCTAACAGCGA
CATGGTGCGCGACACAATGCACGCGCGGAAACTGGGCAGCGGCAACTTGC
CAGAAGAGGAAGACGCGGTGCTGTACGGACTGCATGGCGCAGAGAAATAT
CTCAGCGACTGCCTGCGCGCTGTGTTCGGCAGCATCGGCAACAGCAACAG
CAGCAGCAGCAGCAGCAGCAGCAGCACGGCGGTCAACGAGGCGGCGCAGC
AAAGCGCGCGCGCGCTACAGCGCATCGGCGCGTTCCGCGGCGTGCTGCTG
CACGGCGCGAGCGGCTGCGGCAAGACGGCGCTGCTCAAGCGCGCGGTGCG
CGCACTGCGCAGCGGCGGCGTGAACACGCTGGTGGTGGACAGCACCAGCG
TGGTAAGCAGCGTGGTGGGCGAAGGCGAGCGCAAGCTCAGCCACGCCTTC
TGGCTGGCGCGCACGCTAGCGCCCAGCGTGCTGGTGCTGGAGAACGTGGA
CAACGTCGCGCCGCGCCGCGCCGCCGCCGCCGCCAGCAGCAGCAGCAGCA
GCAGCGCCGCCGCGTTCAACCGCCTGCTCAGCACGCTGCTGGTCGAGCTG
GACGGCGTGGCGTCTCGCGCCGAAGCCGTCGCCGCGCCGCTGCTGCTGCT
CGCCTCCACGCGCGACGTCGCGCTCGTCGACGCCGCGCTGCTGCGCCCCG
GCCGGCTCGACGTGCACATCGGCGTGCGCGCGCCCGACGCGCGCGCGCGT
GAGCGCATCTTCATCGCCGAGTGCGCCCGGCTGCGCGTGGCGCCGTCGCC
GGCGCAGCTGCGCGTCGCGCGCGAAGGCGGCGCCGCGCTGCCGTCCGGCG
CGCACGTGCGGCAGCTGGCGCACGCGCTGCGCGCGCGTCGTCGAAACGCA
AGCGCGGAGAGAAGATGA
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Coding sequence (CDS) from alignment at tig00000883_pilon:83114..84781-

>Ggra9358.t1 ID=Ggra9358.t1|Name=Ggra9358.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1668bp|location=Sequence derived from alignment at tig00000883_pilon:83114..84781- (Gracilaria gracilis GNS1m male)
ATGAAGCCTGTCGCAGAACAAAAGCATGTCAAATGGTCCATCTCGTGCGT
ACAGCAACAAGCGTACGACAAACTGCGCCACTTTGTGCTGCACTCGGATG
AGTACCCCAAGGCGGCCGTGATCCACGGCCCTCCCGGCTGCGGAAAGAGC
TCGCTCTGCCGACGCTTTGCGCAGGACCACGGCTACCAAGTGCGCGTGCT
AGGATTCAAGCAGCTCGCGGACGACGATTCCGGCGTGGTGGAGCACACCA
TCATGCACGTGTTCCGCAGCTGCATGGCGCAGCGCACGGAACGCACGGCG
ATCGTGATTGACGAGCTGGACATTTGGGCGCCGAAGCGCGTGAAATCGGC
GTGGGCTTTGAGGCTGATCGGCGCGTTGAGCGACGCGCTGGAAGAATTGG
GCGAAGAAAAGTTGCGCTCAGTGGTGGTGCTGACGACTTGCTGCGCGCTG
GGCGACGTGCACGGCTTGCTTGTTCGGCGAGGAAAGCTGGGATGCACGGT
TGCGTTGAGCGCGCTGTCGTTCGACGACAGGGCGCGGCTATGTTGTGAGT
GGATGATGCGCGTGCGTGGAGGGGACACGCGTGAGCAAGAGTGCAGAAAT
GAGGCGGTTTACATGGCGAGCGTAACGGCGGGCTTCATGGTGGCGGACAT
GATGGCGCTTCTGTGGCGTCTGGAGGACGGACGTTCACTGCGCGCACGCA
TGGCGGACGGCGAGGAAAGCGCGAACAAGTTGGCAGAGTGGCGCGAATTG
AGAGAGACGGTGCGCGTGGTGCGCCCTTCACTATTGGCAGCTAACAGCGA
CATGGTGCGCGACACAATGCACGCGCGGAAACTGGGCAGCGGCAACTTGC
CAGAAGAGGAAGACGCGGTGCTGTACGGACTGCATGGCGCAGAGAAATAT
CTCAGCGACTGCCTGCGCGCTGTGTTCGGCAGCATCGGCAACAGCAACAG
CAGCAGCAGCAGCAGCAGCAGCAGCACGGCGGTCAACGAGGCGGCGCAGC
AAAGCGCGCGCGCGCTACAGCGCATCGGCGCGTTCCGCGGCGTGCTGCTG
CACGGCGCGAGCGGCTGCGGCAAGACGGCGCTGCTCAAGCGCGCGGTGCG
CGCACTGCGCAGCGGCGGCGTGAACACGCTGGTGGTGGACAGCACCAGCG
TGGTAAGCAGCGTGGTGGGCGAAGGCGAGCGCAAGCTCAGCCACGCCTTC
TGGCTGGCGCGCACGCTAGCGCCCAGCGTGCTGGTGCTGGAGAACGTGGA
CAACGTCGCGCCGCGCCGCGCCGCCGCCGCCGCCAGCAGCAGCAGCAGCA
GCAGCGCCGCCGCGTTCAACCGCCTGCTCAGCACGCTGCTGGTCGAGCTG
GACGGCGTGGCGTCTCGCGCCGAAGCCGTCGCCGCGCCGCTGCTGCTGCT
CGCCTCCACGCGCGACGTCGCGCTCGTCGACGCCGCGCTGCTGCGCCCCG
GCCGGCTCGACGTGCACATCGGCGTGCGCGCGCCCGACGCGCGCGCGCGT
GAGCGCATCTTCATCGCCGAGTGCGCCCGGCTGCGCGTGGCGCCGTCGCC
GGCGCAGCTGCGCGTCGCGCGCGAAGGCGGCGCCGCGCTGCCGTCCGGCG
CGCACGTGCGGCAGCTGGCGCACGCGCTGCGCGCGCGTCGTCGAAACGCA
AGCGCGGAGAGAAGATGA
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