Ggra9398.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9398.t1
Unique NameGgra9398.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length133
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:351087..351485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9398Ggra9398Gracilaria gracilis GNS1m malegenetig00000883_pilon 351087..351485 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9398.t1.start1Ggra9398.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 351087..351089 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9398.t1.CDS1Ggra9398.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 351087..351485 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9398.t1.exon1Ggra9398.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 351087..351485 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9398.t1.stop1Ggra9398.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 351483..351485 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9398.t1Ggra9398.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 351087..351485 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9398.t1 ID=Ggra9398.t1|Name=Ggra9398.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=133bp
MGCLPSKPETVGANLQQNPAAYLIKVRLSTGLQLPCYVIPSDTIQDVRNR
IEREHGVQPDVYLEGKMVKPPILAKWNERWIPVNPDATMQMIGLQKQLRF
ADITDKLSKVRKFANVHWAASNFFVIATSGDS*
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spliced messenger RNA

>Ggra9398.t1 ID=Ggra9398.t1|Name=Ggra9398.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=399bp|location=Sequence derived from alignment at tig00000883_pilon:351087..351485+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTGTCTTCCATCCAAACCTGAAACAGTCGGCGCCAATTTGCAGCA
GAATCCCGCTGCATACTTGATAAAAGTTCGCCTCTCAACTGGTCTACAAC
TTCCGTGCTACGTTATTCCTTCAGACACAATTCAGGATGTTCGTAATCGT
ATTGAAAGGGAGCACGGTGTACAACCTGATGTTTATCTGGAAGGAAAGAT
GGTCAAGCCGCCGATTCTGGCCAAGTGGAATGAGCGCTGGATTCCTGTAA
ATCCTGACGCTACCATGCAAATGATCGGCTTGCAGAAACAGTTGCGCTTT
GCTGATATCACCGATAAGCTTAGTAAGGTGCGAAAGTTTGCGAACGTTCA
CTGGGCTGCGTCTAATTTCTTTGTGATTGCAACTTCTGGCGACTCCTGA
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protein sequence of Ggra9398.t1

>Ggra9398.t1 ID=Ggra9398.t1|Name=Ggra9398.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=133bp
MGCLPSKPETVGANLQQNPAAYLIKVRLSTGLQLPCYVIPSDTIQDVRNR
IEREHGVQPDVYLEGKMVKPPILAKWNERWIPVNPDATMQMIGLQKQLRF
ADITDKLSKVRKFANVHWAASNFFVIATSGDS*
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mRNA from alignment at tig00000883_pilon:351087..351485+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9398.t1 ID=Ggra9398.t1|Name=Ggra9398.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=399bp|location=Sequence derived from alignment at tig00000883_pilon:351087..351485+ (Gracilaria gracilis GNS1m male)
ATGGGCTGTCTTCCATCCAAACCTGAAACAGTCGGCGCCAATTTGCAGCA
GAATCCCGCTGCATACTTGATAAAAGTTCGCCTCTCAACTGGTCTACAAC
TTCCGTGCTACGTTATTCCTTCAGACACAATTCAGGATGTTCGTAATCGT
ATTGAAAGGGAGCACGGTGTACAACCTGATGTTTATCTGGAAGGAAAGAT
GGTCAAGCCGCCGATTCTGGCCAAGTGGAATGAGCGCTGGATTCCTGTAA
ATCCTGACGCTACCATGCAAATGATCGGCTTGCAGAAACAGTTGCGCTTT
GCTGATATCACCGATAAGCTTAGTAAGGTGCGAAAGTTTGCGAACGTTCA
CTGGGCTGCGTCTAATTTCTTTGTGATTGCAACTTCTGGCGACTCCTGA
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Coding sequence (CDS) from alignment at tig00000883_pilon:351087..351485+

>Ggra9398.t1 ID=Ggra9398.t1|Name=Ggra9398.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=399bp|location=Sequence derived from alignment at tig00000883_pilon:351087..351485+ (Gracilaria gracilis GNS1m male)
ATGGGCTGTCTTCCATCCAAACCTGAAACAGTCGGCGCCAATTTGCAGCA
GAATCCCGCTGCATACTTGATAAAAGTTCGCCTCTCAACTGGTCTACAAC
TTCCGTGCTACGTTATTCCTTCAGACACAATTCAGGATGTTCGTAATCGT
ATTGAAAGGGAGCACGGTGTACAACCTGATGTTTATCTGGAAGGAAAGAT
GGTCAAGCCGCCGATTCTGGCCAAGTGGAATGAGCGCTGGATTCCTGTAA
ATCCTGACGCTACCATGCAAATGATCGGCTTGCAGAAACAGTTGCGCTTT
GCTGATATCACCGATAAGCTTAGTAAGGTGCGAAAGTTTGCGAACGTTCA
CTGGGCTGCGTCTAATTTCTTTGTGATTGCAACTTCTGGCGACTCCTGA
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