Ggra9362.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9362.t1
Unique Name	Ggra9362.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	830

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000883_pilon	contig	tig00000883_pilon:95376..97865 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9362	Ggra9362	Gracilaria gracilis GNS1m male	gene	tig00000883_pilon 95376..97865 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9362.t1.start1	Ggra9362.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000883_pilon 95376..95378 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9362.t1.CDS1	Ggra9362.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000883_pilon 95376..97865 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9362.t1.exon1	Ggra9362.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000883_pilon 95376..97865 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9362.t1.stop1	Ggra9362.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000883_pilon 97863..97865 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9362.t1	Ggra9362.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000883_pilon 95376..97865 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000883_pilon:95376..97865+
coding sequence from alignment at tig00000883_pilon:95376..97865+

mRNA sequence

>Ggra9362.t1 ID=Ggra9362.t1|Name=Ggra9362.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=830bp
MGSVTHEDVHHLEKFLKSRQAVSVVDAVSIVARIVENAARPDAASPSSIA
IARKVLADLLENPSPNAIPKLLDICSLNTSFQVLDVFVLTSAAWKALVAA
FIAKDASLSTKTAFGVIQCALRSALLMLVRAVSVQHGIRSSDVPDIARCV
KITKFYCINAAKCSKALLLSDNRDESCSDQLADALSHAMQLVAVTSHILL
FDPVLDSSTLLSIQEQLCPLIGTTLGCILRMIHQVSDDKSSSKAVALFVK
CRDKFANTSNFLASCFEDIANHSFLLLAMLHVMRWEVSEIDPEANKSEPL
NDMHDRRWSFFKTCLLPNLFQLCEHAYAELVLLRERATGQPYLDTISSSV
AQCIVLACGLRPKEDDRLNMVYFLLQQISDSNPASAYIAHESLQSMYENS
FNDQGKENLIAMLCRYLRVAFAIESSHLESRWIPLLTELLAKHFVRFGTE
KKLSRLLNWTPGSEDRGSKKKMNDAPDPLALRMLSSLSTHMVNQFRESKE
LNGTQKKENDGHEESDLFQKLLILLTEDEKSLTPVKVKEDICKMCTGENT
PAWAIPLIPFVSDAKAVNAMALRHIAKEASLVGLCAALNILQPSSMTSKE
IESVCKLSTSLLDRHGYAIGPAIAAFVSRSSSMLHGSVSVADWQYLSNAL
DQTVTSVLQAARKDPHWSVVSSLTLYHAAMTLSQIRSLSVPQKDRNTLIT
LPDSILPLAEEALERLKISKNASLTLGGRGLVNERLAAEREIRLVRARTR
TLQRSDGDVGVDLVETLRLARSGVSECLCDLLNERNGDADHFEVKSEIRS
LQVLLGVASQLYPDCEKEPPAAEASEKDC*

spliced messenger RNA

>Ggra9362.t1 ID=Ggra9362.t1|Name=Ggra9362.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2490bp|location=Sequence derived from alignment at tig00000883_pilon:95376..97865+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTCCGTCACTCACGAAGATGTTCATCATCTGGAAAAGTTTCTGAA
AAGCCGCCAAGCCGTGAGTGTGGTCGATGCGGTATCTATTGTCGCTCGCA
TTGTCGAGAATGCAGCTCGCCCAGATGCAGCCTCTCCGTCATCCATTGCA
ATTGCTCGAAAAGTTTTGGCGGACCTGCTTGAAAATCCCTCGCCGAATGC
AATCCCCAAGCTCTTGGACATATGCTCCTTAAACACTTCATTTCAAGTCT
TGGACGTGTTTGTTCTGACCTCTGCGGCGTGGAAGGCATTAGTGGCAGCC
TTCATTGCCAAGGACGCGTCGCTTTCAACAAAAACTGCTTTTGGCGTCAT
CCAGTGCGCGCTGCGAAGTGCTCTTCTCATGCTGGTCCGTGCGGTTTCTG
TGCAGCATGGGATAAGGTCATCCGATGTACCGGACATTGCTCGATGCGTG
AAGATTACCAAATTCTATTGCATCAATGCAGCAAAGTGTTCAAAGGCGTT
ACTGTTGTCGGACAATCGCGATGAGTCTTGTTCTGATCAGCTTGCCGATG
CGCTCTCTCACGCCATGCAGTTGGTGGCAGTCACATCTCACATTTTGTTG
TTCGATCCAGTGCTGGATTCGTCAACTTTACTAAGCATTCAGGAGCAACT
TTGTCCTCTAATCGGCACCACTCTAGGATGTATTTTGCGCATGATCCATC
AAGTCTCAGACGACAAGTCTAGCTCTAAGGCAGTTGCGTTATTCGTAAAA
TGTCGTGACAAGTTTGCAAACACTTCCAACTTTCTGGCAAGCTGCTTTGA
GGATATAGCCAATCATTCCTTTCTTCTTCTTGCGATGCTTCACGTTATGC
GATGGGAAGTCAGCGAGATTGATCCCGAAGCCAACAAATCCGAACCTTTA
AACGACATGCATGACCGAAGATGGTCTTTCTTCAAGACTTGCTTGCTCCC
AAATCTGTTTCAACTCTGTGAGCATGCGTATGCGGAACTAGTATTGCTAC
GAGAACGAGCAACTGGTCAGCCATACTTGGACACCATTAGTTCATCCGTG
GCGCAATGTATTGTTTTAGCATGTGGATTACGACCGAAAGAGGACGATCG
GCTAAACATGGTTTACTTTCTTCTTCAGCAGATAAGCGATTCTAATCCTG
CCTCTGCCTATATCGCACATGAAAGCCTGCAGAGTATGTATGAGAATTCT
TTTAATGACCAAGGAAAGGAGAATCTCATAGCAATGCTATGTAGATATCT
ACGAGTGGCCTTTGCGATCGAGTCATCTCATCTCGAAAGCCGCTGGATTC
CTCTCTTGACTGAATTGCTTGCCAAGCATTTTGTTCGTTTCGGAACCGAA
AAAAAGCTATCTCGTCTTCTTAACTGGACACCAGGGAGCGAGGATAGGGG
AAGCAAAAAAAAAATGAATGACGCACCGGATCCACTGGCATTGCGTATGT
TAAGCTCGCTTTCTACACATATGGTGAACCAGTTCAGGGAATCCAAAGAA
TTAAACGGTACTCAAAAGAAAGAGAATGACGGCCACGAAGAAAGTGACCT
GTTCCAGAAATTGTTGATCCTCCTGACAGAAGATGAAAAGAGCCTTACGC
CGGTAAAGGTGAAGGAAGACATTTGTAAGATGTGCACGGGTGAAAACACA
CCTGCATGGGCGATCCCACTTATCCCATTCGTTTCGGATGCAAAGGCGGT
AAATGCGATGGCCCTGAGACACATAGCTAAAGAAGCGTCTTTAGTGGGAC
TATGCGCAGCTCTAAACATCTTGCAACCATCATCCATGACATCGAAAGAG
ATCGAGTCTGTATGCAAACTGTCAACTTCGCTACTGGATAGACATGGCTA
TGCCATTGGTCCAGCTATTGCAGCTTTTGTTTCTAGGTCGTCTTCCATGC
TCCATGGTTCTGTGTCCGTCGCAGATTGGCAGTACTTGAGCAACGCGCTA
GACCAAACGGTCACGAGTGTTTTGCAAGCCGCGAGAAAAGATCCACATTG
GTCCGTGGTATCAAGCTTGACCTTGTATCATGCAGCAATGACCCTATCAC
AGATACGCTCACTATCTGTTCCCCAGAAAGACCGAAATACGCTAATCACG
CTCCCTGACAGCATCCTGCCTTTAGCCGAAGAAGCGCTAGAAAGACTCAA
GATTTCTAAGAATGCCAGTCTAACGCTAGGCGGAAGGGGTCTTGTGAATG
AGAGATTAGCGGCAGAACGCGAAATCAGGTTAGTCAGAGCCAGAACGAGG
ACGCTCCAACGCAGTGATGGTGATGTTGGTGTTGATTTGGTGGAAACTTT
AAGGCTGGCAAGGAGTGGTGTTTCGGAATGCCTTTGCGATCTGTTGAACG
AAAGGAATGGTGATGCGGATCACTTCGAAGTGAAATCAGAAATCCGGAGT
TTGCAAGTTCTTCTTGGTGTTGCATCTCAGCTGTACCCTGACTGTGAAAA
GGAGCCACCCGCAGCAGAAGCGAGTGAAAAAGACTGTTAA

protein sequence of Ggra9362.t1

>Ggra9362.t1 ID=Ggra9362.t1|Name=Ggra9362.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=830bp
MGSVTHEDVHHLEKFLKSRQAVSVVDAVSIVARIVENAARPDAASPSSIA
IARKVLADLLENPSPNAIPKLLDICSLNTSFQVLDVFVLTSAAWKALVAA
FIAKDASLSTKTAFGVIQCALRSALLMLVRAVSVQHGIRSSDVPDIARCV
KITKFYCINAAKCSKALLLSDNRDESCSDQLADALSHAMQLVAVTSHILL
FDPVLDSSTLLSIQEQLCPLIGTTLGCILRMIHQVSDDKSSSKAVALFVK
CRDKFANTSNFLASCFEDIANHSFLLLAMLHVMRWEVSEIDPEANKSEPL
NDMHDRRWSFFKTCLLPNLFQLCEHAYAELVLLRERATGQPYLDTISSSV
AQCIVLACGLRPKEDDRLNMVYFLLQQISDSNPASAYIAHESLQSMYENS
FNDQGKENLIAMLCRYLRVAFAIESSHLESRWIPLLTELLAKHFVRFGTE
KKLSRLLNWTPGSEDRGSKKKMNDAPDPLALRMLSSLSTHMVNQFRESKE
LNGTQKKENDGHEESDLFQKLLILLTEDEKSLTPVKVKEDICKMCTGENT
PAWAIPLIPFVSDAKAVNAMALRHIAKEASLVGLCAALNILQPSSMTSKE
IESVCKLSTSLLDRHGYAIGPAIAAFVSRSSSMLHGSVSVADWQYLSNAL
DQTVTSVLQAARKDPHWSVVSSLTLYHAAMTLSQIRSLSVPQKDRNTLIT
LPDSILPLAEEALERLKISKNASLTLGGRGLVNERLAAEREIRLVRARTR
TLQRSDGDVGVDLVETLRLARSGVSECLCDLLNERNGDADHFEVKSEIRS
LQVLLGVASQLYPDCEKEPPAAEASEKDC*

mRNA from alignment at tig00000883_pilon:95376..97865+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9362.t1 ID=Ggra9362.t1|Name=Ggra9362.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2490bp|location=Sequence derived from alignment at tig00000883_pilon:95376..97865+ (Gracilaria gracilis GNS1m male)
ATGGGCTCCGTCACTCACGAAGATGTTCATCATCTGGAAAAGTTTCTGAA
AAGCCGCCAAGCCGTGAGTGTGGTCGATGCGGTATCTATTGTCGCTCGCA
TTGTCGAGAATGCAGCTCGCCCAGATGCAGCCTCTCCGTCATCCATTGCA
ATTGCTCGAAAAGTTTTGGCGGACCTGCTTGAAAATCCCTCGCCGAATGC
AATCCCCAAGCTCTTGGACATATGCTCCTTAAACACTTCATTTCAAGTCT
TGGACGTGTTTGTTCTGACCTCTGCGGCGTGGAAGGCATTAGTGGCAGCC
TTCATTGCCAAGGACGCGTCGCTTTCAACAAAAACTGCTTTTGGCGTCAT
CCAGTGCGCGCTGCGAAGTGCTCTTCTCATGCTGGTCCGTGCGGTTTCTG
TGCAGCATGGGATAAGGTCATCCGATGTACCGGACATTGCTCGATGCGTG
AAGATTACCAAATTCTATTGCATCAATGCAGCAAAGTGTTCAAAGGCGTT
ACTGTTGTCGGACAATCGCGATGAGTCTTGTTCTGATCAGCTTGCCGATG
CGCTCTCTCACGCCATGCAGTTGGTGGCAGTCACATCTCACATTTTGTTG
TTCGATCCAGTGCTGGATTCGTCAACTTTACTAAGCATTCAGGAGCAACT
TTGTCCTCTAATCGGCACCACTCTAGGATGTATTTTGCGCATGATCCATC
AAGTCTCAGACGACAAGTCTAGCTCTAAGGCAGTTGCGTTATTCGTAAAA
TGTCGTGACAAGTTTGCAAACACTTCCAACTTTCTGGCAAGCTGCTTTGA
GGATATAGCCAATCATTCCTTTCTTCTTCTTGCGATGCTTCACGTTATGC
GATGGGAAGTCAGCGAGATTGATCCCGAAGCCAACAAATCCGAACCTTTA
AACGACATGCATGACCGAAGATGGTCTTTCTTCAAGACTTGCTTGCTCCC
AAATCTGTTTCAACTCTGTGAGCATGCGTATGCGGAACTAGTATTGCTAC
GAGAACGAGCAACTGGTCAGCCATACTTGGACACCATTAGTTCATCCGTG
GCGCAATGTATTGTTTTAGCATGTGGATTACGACCGAAAGAGGACGATCG
GCTAAACATGGTTTACTTTCTTCTTCAGCAGATAAGCGATTCTAATCCTG
CCTCTGCCTATATCGCACATGAAAGCCTGCAGAGTATGTATGAGAATTCT
TTTAATGACCAAGGAAAGGAGAATCTCATAGCAATGCTATGTAGATATCT
ACGAGTGGCCTTTGCGATCGAGTCATCTCATCTCGAAAGCCGCTGGATTC
CTCTCTTGACTGAATTGCTTGCCAAGCATTTTGTTCGTTTCGGAACCGAA
AAAAAGCTATCTCGTCTTCTTAACTGGACACCAGGGAGCGAGGATAGGGG
AAGCAAAAAAAAAATGAATGACGCACCGGATCCACTGGCATTGCGTATGT
TAAGCTCGCTTTCTACACATATGGTGAACCAGTTCAGGGAATCCAAAGAA
TTAAACGGTACTCAAAAGAAAGAGAATGACGGCCACGAAGAAAGTGACCT
GTTCCAGAAATTGTTGATCCTCCTGACAGAAGATGAAAAGAGCCTTACGC
CGGTAAAGGTGAAGGAAGACATTTGTAAGATGTGCACGGGTGAAAACACA
CCTGCATGGGCGATCCCACTTATCCCATTCGTTTCGGATGCAAAGGCGGT
AAATGCGATGGCCCTGAGACACATAGCTAAAGAAGCGTCTTTAGTGGGAC
TATGCGCAGCTCTAAACATCTTGCAACCATCATCCATGACATCGAAAGAG
ATCGAGTCTGTATGCAAACTGTCAACTTCGCTACTGGATAGACATGGCTA
TGCCATTGGTCCAGCTATTGCAGCTTTTGTTTCTAGGTCGTCTTCCATGC
TCCATGGTTCTGTGTCCGTCGCAGATTGGCAGTACTTGAGCAACGCGCTA
GACCAAACGGTCACGAGTGTTTTGCAAGCCGCGAGAAAAGATCCACATTG
GTCCGTGGTATCAAGCTTGACCTTGTATCATGCAGCAATGACCCTATCAC
AGATACGCTCACTATCTGTTCCCCAGAAAGACCGAAATACGCTAATCACG
CTCCCTGACAGCATCCTGCCTTTAGCCGAAGAAGCGCTAGAAAGACTCAA
GATTTCTAAGAATGCCAGTCTAACGCTAGGCGGAAGGGGTCTTGTGAATG
AGAGATTAGCGGCAGAACGCGAAATCAGGTTAGTCAGAGCCAGAACGAGG
ACGCTCCAACGCAGTGATGGTGATGTTGGTGTTGATTTGGTGGAAACTTT
AAGGCTGGCAAGGAGTGGTGTTTCGGAATGCCTTTGCGATCTGTTGAACG
AAAGGAATGGTGATGCGGATCACTTCGAAGTGAAATCAGAAATCCGGAGT
TTGCAAGTTCTTCTTGGTGTTGCATCTCAGCTGTACCCTGACTGTGAAAA
GGAGCCACCCGCAGCAGAAGCGAGTGAAAAAGACTGTTAA

Coding sequence (CDS) from alignment at tig00000883_pilon:95376..97865+

>Ggra9362.t1 ID=Ggra9362.t1|Name=Ggra9362.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2490bp|location=Sequence derived from alignment at tig00000883_pilon:95376..97865+ (Gracilaria gracilis GNS1m male)
ATGGGCTCCGTCACTCACGAAGATGTTCATCATCTGGAAAAGTTTCTGAA
AAGCCGCCAAGCCGTGAGTGTGGTCGATGCGGTATCTATTGTCGCTCGCA
TTGTCGAGAATGCAGCTCGCCCAGATGCAGCCTCTCCGTCATCCATTGCA
ATTGCTCGAAAAGTTTTGGCGGACCTGCTTGAAAATCCCTCGCCGAATGC
AATCCCCAAGCTCTTGGACATATGCTCCTTAAACACTTCATTTCAAGTCT
TGGACGTGTTTGTTCTGACCTCTGCGGCGTGGAAGGCATTAGTGGCAGCC
TTCATTGCCAAGGACGCGTCGCTTTCAACAAAAACTGCTTTTGGCGTCAT
CCAGTGCGCGCTGCGAAGTGCTCTTCTCATGCTGGTCCGTGCGGTTTCTG
TGCAGCATGGGATAAGGTCATCCGATGTACCGGACATTGCTCGATGCGTG
AAGATTACCAAATTCTATTGCATCAATGCAGCAAAGTGTTCAAAGGCGTT
ACTGTTGTCGGACAATCGCGATGAGTCTTGTTCTGATCAGCTTGCCGATG
CGCTCTCTCACGCCATGCAGTTGGTGGCAGTCACATCTCACATTTTGTTG
TTCGATCCAGTGCTGGATTCGTCAACTTTACTAAGCATTCAGGAGCAACT
TTGTCCTCTAATCGGCACCACTCTAGGATGTATTTTGCGCATGATCCATC
AAGTCTCAGACGACAAGTCTAGCTCTAAGGCAGTTGCGTTATTCGTAAAA
TGTCGTGACAAGTTTGCAAACACTTCCAACTTTCTGGCAAGCTGCTTTGA
GGATATAGCCAATCATTCCTTTCTTCTTCTTGCGATGCTTCACGTTATGC
GATGGGAAGTCAGCGAGATTGATCCCGAAGCCAACAAATCCGAACCTTTA
AACGACATGCATGACCGAAGATGGTCTTTCTTCAAGACTTGCTTGCTCCC
AAATCTGTTTCAACTCTGTGAGCATGCGTATGCGGAACTAGTATTGCTAC
GAGAACGAGCAACTGGTCAGCCATACTTGGACACCATTAGTTCATCCGTG
GCGCAATGTATTGTTTTAGCATGTGGATTACGACCGAAAGAGGACGATCG
GCTAAACATGGTTTACTTTCTTCTTCAGCAGATAAGCGATTCTAATCCTG
CCTCTGCCTATATCGCACATGAAAGCCTGCAGAGTATGTATGAGAATTCT
TTTAATGACCAAGGAAAGGAGAATCTCATAGCAATGCTATGTAGATATCT
ACGAGTGGCCTTTGCGATCGAGTCATCTCATCTCGAAAGCCGCTGGATTC
CTCTCTTGACTGAATTGCTTGCCAAGCATTTTGTTCGTTTCGGAACCGAA
AAAAAGCTATCTCGTCTTCTTAACTGGACACCAGGGAGCGAGGATAGGGG
AAGCAAAAAAAAAATGAATGACGCACCGGATCCACTGGCATTGCGTATGT
TAAGCTCGCTTTCTACACATATGGTGAACCAGTTCAGGGAATCCAAAGAA
TTAAACGGTACTCAAAAGAAAGAGAATGACGGCCACGAAGAAAGTGACCT
GTTCCAGAAATTGTTGATCCTCCTGACAGAAGATGAAAAGAGCCTTACGC
CGGTAAAGGTGAAGGAAGACATTTGTAAGATGTGCACGGGTGAAAACACA
CCTGCATGGGCGATCCCACTTATCCCATTCGTTTCGGATGCAAAGGCGGT
AAATGCGATGGCCCTGAGACACATAGCTAAAGAAGCGTCTTTAGTGGGAC
TATGCGCAGCTCTAAACATCTTGCAACCATCATCCATGACATCGAAAGAG
ATCGAGTCTGTATGCAAACTGTCAACTTCGCTACTGGATAGACATGGCTA
TGCCATTGGTCCAGCTATTGCAGCTTTTGTTTCTAGGTCGTCTTCCATGC
TCCATGGTTCTGTGTCCGTCGCAGATTGGCAGTACTTGAGCAACGCGCTA
GACCAAACGGTCACGAGTGTTTTGCAAGCCGCGAGAAAAGATCCACATTG
GTCCGTGGTATCAAGCTTGACCTTGTATCATGCAGCAATGACCCTATCAC
AGATACGCTCACTATCTGTTCCCCAGAAAGACCGAAATACGCTAATCACG
CTCCCTGACAGCATCCTGCCTTTAGCCGAAGAAGCGCTAGAAAGACTCAA
GATTTCTAAGAATGCCAGTCTAACGCTAGGCGGAAGGGGTCTTGTGAATG
AGAGATTAGCGGCAGAACGCGAAATCAGGTTAGTCAGAGCCAGAACGAGG
ACGCTCCAACGCAGTGATGGTGATGTTGGTGTTGATTTGGTGGAAACTTT
AAGGCTGGCAAGGAGTGGTGTTTCGGAATGCCTTTGCGATCTGTTGAACG
AAAGGAATGGTGATGCGGATCACTTCGAAGTGAAATCAGAAATCCGGAGT
TTGCAAGTTCTTCTTGGTGTTGCATCTCAGCTGTACCCTGACTGTGAAAA
GGAGCCACCCGCAGCAGAAGCGAGTGAAAAAGACTGTTAA