Ggra9387.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9387.t2
Unique Name	Ggra9387.t2
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	659

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000883_pilon	contig	tig00000883_pilon:285289..287265 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9387	Ggra9387	Gracilaria gracilis GNS1m male	gene	tig00000883_pilon 285289..287265 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9387.t2.start1	Ggra9387.t2.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000883_pilon 285289..285291 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9387.t2.CDS1	Ggra9387.t2.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000883_pilon 285289..287265 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9387.t2.exon1	Ggra9387.t2.exon1	Gracilaria gracilis GNS1m male	exon	tig00000883_pilon 285289..287265 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9387.t2.stop1	Ggra9387.t2.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000883_pilon 287263..287265 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9387.t2	Ggra9387.t2	Gracilaria gracilis GNS1m male	polypeptide	tig00000883_pilon 285289..287265 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000883_pilon:285289..287265+
coding sequence from alignment at tig00000883_pilon:285289..287265+

mRNA sequence

>Ggra9387.t2 ID=Ggra9387.t2|Name=Ggra9387.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=659bp
MMEASASDDDESWGMDDFNRDYYDELKEEYKDNKKVHIFAKEDYELHERD
AAYLFDNRARDLEQIRKEMESRPKAKLDEHTTVDDVMLLSDMRDEIEIEG
FKKTLLTHDAINGKGWQDPMPESDLDGDPEHIHFRKAPKPEKDPRSEDIL
ASLEETNLLTSKQYGCEQDERDALNSSYDMMQTEFWDEPIEPFSLSGNVD
VPDRDEFARWQAEAKARGGTLTRGDSYFFPPYNDPMGKIERPDPPEEHDV
PHQLNSLVNANRGVWQGTAKVFALESGDKFAPQLSACFSLHSSVRKGAGD
SLEWTSTASGGSLEYVSDVCIPSPKHGEALVPGRAVSAEGGYVVCRKNGI
SRKDTEFFTMSHNCLKSMTVNKCCRPEMEIGMRSEYEGLSVRHRIFLCTS
DGKGEHNEKEGRNWEKFSHVVVLKESQTATTCSRFSTDSKPFLSARQSKL
EVTNASKLLGVWRGHGVLLLPEYPPMSCEHISTTYHTSKEDSITENDVTW
VEDKIPDNPNQLSRRRERTMKKRKVSRRVREARMHDRRRLSKCQLLTREQ
TGEAVEEQKFAWTAIPSVDAFSSMHSPRIGHFVGDYAALVVSKEVLLMFP
VSDAFPEIWNTVSAIELTRPSRLRIEVGRNDQGTVVGALFVNESVEDDAE
SDAVAAYV*

spliced messenger RNA

>Ggra9387.t2 ID=Ggra9387.t2|Name=Ggra9387.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1977bp|location=Sequence derived from alignment at tig00000883_pilon:285289..287265+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGAGGCCAGTGCTTCAGATGATGATGAAAGTTGGGGCATGGACGA
CTTTAATCGAGATTACTACGATGAGCTCAAGGAAGAGTACAAGGACAACA
AGAAAGTACATATTTTCGCTAAGGAAGACTATGAACTACACGAGAGAGAT
GCGGCCTATTTATTTGACAATCGCGCTCGCGATTTGGAACAGATTAGGAA
AGAGATGGAATCACGGCCAAAAGCAAAGCTAGATGAACACACCACTGTCG
ACGATGTAATGCTGCTCTCTGATATGCGCGACGAGATCGAAATCGAAGGT
TTCAAGAAGACATTACTGACGCATGACGCCATAAACGGAAAAGGATGGCA
GGATCCGATGCCTGAAAGTGACCTTGACGGTGACCCAGAACACATTCATT
TTCGCAAAGCACCCAAACCGGAAAAAGATCCCCGATCTGAGGATATTCTT
GCATCTCTCGAAGAAACAAACTTATTGACAAGTAAGCAATATGGGTGCGA
GCAGGATGAGAGAGACGCTCTAAACAGCAGCTATGATATGATGCAAACAG
AATTCTGGGACGAACCTATAGAACCTTTTAGCTTAAGCGGCAACGTCGAC
GTGCCAGACCGAGACGAATTCGCTCGCTGGCAAGCAGAAGCAAAAGCGCG
AGGTGGAACACTCACCAGAGGAGATTCGTACTTTTTTCCGCCTTACAATG
ACCCAATGGGCAAAATTGAACGACCGGATCCACCTGAAGAGCACGATGTA
CCGCATCAACTAAACTCCCTTGTCAATGCAAATCGCGGCGTATGGCAGGG
CACCGCCAAAGTGTTTGCGCTCGAATCTGGCGACAAGTTTGCTCCTCAGT
TGTCTGCATGCTTCTCCCTGCACAGCTCTGTCCGAAAGGGTGCGGGTGAC
AGTCTTGAATGGACATCAACGGCAAGTGGTGGATCACTAGAGTATGTGTC
AGACGTTTGTATTCCTTCACCAAAACATGGGGAAGCACTTGTACCTGGTC
GAGCGGTATCTGCGGAGGGTGGCTATGTTGTGTGCCGGAAGAATGGCATC
AGTCGGAAAGACACCGAGTTTTTCACAATGAGTCACAACTGTCTTAAATC
GATGACTGTGAACAAGTGCTGTCGTCCAGAGATGGAAATTGGAATGAGGT
CCGAGTACGAAGGGCTCTCTGTCCGTCATCGAATCTTTCTTTGTACCAGC
GATGGAAAGGGTGAGCACAACGAAAAGGAAGGAAGAAATTGGGAGAAGTT
TTCCCATGTTGTCGTCTTGAAGGAATCCCAAACTGCAACCACTTGTAGCA
GATTTTCGACTGACTCGAAACCATTTTTATCGGCCCGGCAATCCAAACTC
GAGGTAACCAATGCTTCAAAGTTGCTCGGGGTATGGCGCGGACACGGCGT
ACTGCTTCTCCCAGAGTACCCTCCAATGTCCTGTGAGCATATTTCAACGA
CATATCACACATCCAAAGAAGACTCCATCACCGAGAATGACGTAACCTGG
GTGGAGGACAAAATTCCTGACAACCCAAATCAGCTGTCACGGCGCCGGGA
GCGCACTATGAAAAAGCGGAAAGTTTCACGAAGAGTACGAGAGGCACGCA
TGCATGATCGACGCCGGCTTTCTAAGTGTCAGTTACTGACCCGAGAACAG
ACCGGAGAAGCGGTTGAAGAGCAGAAATTCGCATGGACAGCGATCCCGAG
TGTGGACGCCTTCTCTTCGATGCATTCTCCTAGAATCGGCCATTTTGTAG
GCGACTATGCGGCATTGGTTGTTTCGAAAGAGGTTCTTCTTATGTTTCCT
GTCAGTGATGCGTTTCCTGAAATTTGGAACACCGTATCTGCAATCGAACT
AACCCGTCCCTCGCGATTGAGAATTGAGGTGGGAAGAAATGATCAAGGCA
CTGTTGTAGGCGCCCTGTTTGTGAATGAGTCTGTTGAGGATGACGCGGAG
AGCGATGCTGTGGCGGCTTACGTTTGA

protein sequence of Ggra9387.t2

>Ggra9387.t2 ID=Ggra9387.t2|Name=Ggra9387.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=659bp
MMEASASDDDESWGMDDFNRDYYDELKEEYKDNKKVHIFAKEDYELHERD
AAYLFDNRARDLEQIRKEMESRPKAKLDEHTTVDDVMLLSDMRDEIEIEG
FKKTLLTHDAINGKGWQDPMPESDLDGDPEHIHFRKAPKPEKDPRSEDIL
ASLEETNLLTSKQYGCEQDERDALNSSYDMMQTEFWDEPIEPFSLSGNVD
VPDRDEFARWQAEAKARGGTLTRGDSYFFPPYNDPMGKIERPDPPEEHDV
PHQLNSLVNANRGVWQGTAKVFALESGDKFAPQLSACFSLHSSVRKGAGD
SLEWTSTASGGSLEYVSDVCIPSPKHGEALVPGRAVSAEGGYVVCRKNGI
SRKDTEFFTMSHNCLKSMTVNKCCRPEMEIGMRSEYEGLSVRHRIFLCTS
DGKGEHNEKEGRNWEKFSHVVVLKESQTATTCSRFSTDSKPFLSARQSKL
EVTNASKLLGVWRGHGVLLLPEYPPMSCEHISTTYHTSKEDSITENDVTW
VEDKIPDNPNQLSRRRERTMKKRKVSRRVREARMHDRRRLSKCQLLTREQ
TGEAVEEQKFAWTAIPSVDAFSSMHSPRIGHFVGDYAALVVSKEVLLMFP
VSDAFPEIWNTVSAIELTRPSRLRIEVGRNDQGTVVGALFVNESVEDDAE
SDAVAAYV*

mRNA from alignment at tig00000883_pilon:285289..287265+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9387.t2 ID=Ggra9387.t2|Name=Ggra9387.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1977bp|location=Sequence derived from alignment at tig00000883_pilon:285289..287265+ (Gracilaria gracilis GNS1m male)
ATGATGGAGGCCAGTGCTTCAGATGATGATGAAAGTTGGGGCATGGACGA
CTTTAATCGAGATTACTACGATGAGCTCAAGGAAGAGTACAAGGACAACA
AGAAAGTACATATTTTCGCTAAGGAAGACTATGAACTACACGAGAGAGAT
GCGGCCTATTTATTTGACAATCGCGCTCGCGATTTGGAACAGATTAGGAA
AGAGATGGAATCACGGCCAAAAGCAAAGCTAGATGAACACACCACTGTCG
ACGATGTAATGCTGCTCTCTGATATGCGCGACGAGATCGAAATCGAAGGT
TTCAAGAAGACATTACTGACGCATGACGCCATAAACGGAAAAGGATGGCA
GGATCCGATGCCTGAAAGTGACCTTGACGGTGACCCAGAACACATTCATT
TTCGCAAAGCACCCAAACCGGAAAAAGATCCCCGATCTGAGGATATTCTT
GCATCTCTCGAAGAAACAAACTTATTGACAAGTAAGCAATATGGGTGCGA
GCAGGATGAGAGAGACGCTCTAAACAGCAGCTATGATATGATGCAAACAG
AATTCTGGGACGAACCTATAGAACCTTTTAGCTTAAGCGGCAACGTCGAC
GTGCCAGACCGAGACGAATTCGCTCGCTGGCAAGCAGAAGCAAAAGCGCG
AGGTGGAACACTCACCAGAGGAGATTCGTACTTTTTTCCGCCTTACAATG
ACCCAATGGGCAAAATTGAACGACCGGATCCACCTGAAGAGCACGATGTA
CCGCATCAACTAAACTCCCTTGTCAATGCAAATCGCGGCGTATGGCAGGG
CACCGCCAAAGTGTTTGCGCTCGAATCTGGCGACAAGTTTGCTCCTCAGT
TGTCTGCATGCTTCTCCCTGCACAGCTCTGTCCGAAAGGGTGCGGGTGAC
AGTCTTGAATGGACATCAACGGCAAGTGGTGGATCACTAGAGTATGTGTC
AGACGTTTGTATTCCTTCACCAAAACATGGGGAAGCACTTGTACCTGGTC
GAGCGGTATCTGCGGAGGGTGGCTATGTTGTGTGCCGGAAGAATGGCATC
AGTCGGAAAGACACCGAGTTTTTCACAATGAGTCACAACTGTCTTAAATC
GATGACTGTGAACAAGTGCTGTCGTCCAGAGATGGAAATTGGAATGAGGT
CCGAGTACGAAGGGCTCTCTGTCCGTCATCGAATCTTTCTTTGTACCAGC
GATGGAAAGGGTGAGCACAACGAAAAGGAAGGAAGAAATTGGGAGAAGTT
TTCCCATGTTGTCGTCTTGAAGGAATCCCAAACTGCAACCACTTGTAGCA
GATTTTCGACTGACTCGAAACCATTTTTATCGGCCCGGCAATCCAAACTC
GAGGTAACCAATGCTTCAAAGTTGCTCGGGGTATGGCGCGGACACGGCGT
ACTGCTTCTCCCAGAGTACCCTCCAATGTCCTGTGAGCATATTTCAACGA
CATATCACACATCCAAAGAAGACTCCATCACCGAGAATGACGTAACCTGG
GTGGAGGACAAAATTCCTGACAACCCAAATCAGCTGTCACGGCGCCGGGA
GCGCACTATGAAAAAGCGGAAAGTTTCACGAAGAGTACGAGAGGCACGCA
TGCATGATCGACGCCGGCTTTCTAAGTGTCAGTTACTGACCCGAGAACAG
ACCGGAGAAGCGGTTGAAGAGCAGAAATTCGCATGGACAGCGATCCCGAG
TGTGGACGCCTTCTCTTCGATGCATTCTCCTAGAATCGGCCATTTTGTAG
GCGACTATGCGGCATTGGTTGTTTCGAAAGAGGTTCTTCTTATGTTTCCT
GTCAGTGATGCGTTTCCTGAAATTTGGAACACCGTATCTGCAATCGAACT
AACCCGTCCCTCGCGATTGAGAATTGAGGTGGGAAGAAATGATCAAGGCA
CTGTTGTAGGCGCCCTGTTTGTGAATGAGTCTGTTGAGGATGACGCGGAG
AGCGATGCTGTGGCGGCTTACGTTTGA

Coding sequence (CDS) from alignment at tig00000883_pilon:285289..287265+

>Ggra9387.t2 ID=Ggra9387.t2|Name=Ggra9387.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1977bp|location=Sequence derived from alignment at tig00000883_pilon:285289..287265+ (Gracilaria gracilis GNS1m male)
ATGATGGAGGCCAGTGCTTCAGATGATGATGAAAGTTGGGGCATGGACGA
CTTTAATCGAGATTACTACGATGAGCTCAAGGAAGAGTACAAGGACAACA
AGAAAGTACATATTTTCGCTAAGGAAGACTATGAACTACACGAGAGAGAT
GCGGCCTATTTATTTGACAATCGCGCTCGCGATTTGGAACAGATTAGGAA
AGAGATGGAATCACGGCCAAAAGCAAAGCTAGATGAACACACCACTGTCG
ACGATGTAATGCTGCTCTCTGATATGCGCGACGAGATCGAAATCGAAGGT
TTCAAGAAGACATTACTGACGCATGACGCCATAAACGGAAAAGGATGGCA
GGATCCGATGCCTGAAAGTGACCTTGACGGTGACCCAGAACACATTCATT
TTCGCAAAGCACCCAAACCGGAAAAAGATCCCCGATCTGAGGATATTCTT
GCATCTCTCGAAGAAACAAACTTATTGACAAGTAAGCAATATGGGTGCGA
GCAGGATGAGAGAGACGCTCTAAACAGCAGCTATGATATGATGCAAACAG
AATTCTGGGACGAACCTATAGAACCTTTTAGCTTAAGCGGCAACGTCGAC
GTGCCAGACCGAGACGAATTCGCTCGCTGGCAAGCAGAAGCAAAAGCGCG
AGGTGGAACACTCACCAGAGGAGATTCGTACTTTTTTCCGCCTTACAATG
ACCCAATGGGCAAAATTGAACGACCGGATCCACCTGAAGAGCACGATGTA
CCGCATCAACTAAACTCCCTTGTCAATGCAAATCGCGGCGTATGGCAGGG
CACCGCCAAAGTGTTTGCGCTCGAATCTGGCGACAAGTTTGCTCCTCAGT
TGTCTGCATGCTTCTCCCTGCACAGCTCTGTCCGAAAGGGTGCGGGTGAC
AGTCTTGAATGGACATCAACGGCAAGTGGTGGATCACTAGAGTATGTGTC
AGACGTTTGTATTCCTTCACCAAAACATGGGGAAGCACTTGTACCTGGTC
GAGCGGTATCTGCGGAGGGTGGCTATGTTGTGTGCCGGAAGAATGGCATC
AGTCGGAAAGACACCGAGTTTTTCACAATGAGTCACAACTGTCTTAAATC
GATGACTGTGAACAAGTGCTGTCGTCCAGAGATGGAAATTGGAATGAGGT
CCGAGTACGAAGGGCTCTCTGTCCGTCATCGAATCTTTCTTTGTACCAGC
GATGGAAAGGGTGAGCACAACGAAAAGGAAGGAAGAAATTGGGAGAAGTT
TTCCCATGTTGTCGTCTTGAAGGAATCCCAAACTGCAACCACTTGTAGCA
GATTTTCGACTGACTCGAAACCATTTTTATCGGCCCGGCAATCCAAACTC
GAGGTAACCAATGCTTCAAAGTTGCTCGGGGTATGGCGCGGACACGGCGT
ACTGCTTCTCCCAGAGTACCCTCCAATGTCCTGTGAGCATATTTCAACGA
CATATCACACATCCAAAGAAGACTCCATCACCGAGAATGACGTAACCTGG
GTGGAGGACAAAATTCCTGACAACCCAAATCAGCTGTCACGGCGCCGGGA
GCGCACTATGAAAAAGCGGAAAGTTTCACGAAGAGTACGAGAGGCACGCA
TGCATGATCGACGCCGGCTTTCTAAGTGTCAGTTACTGACCCGAGAACAG
ACCGGAGAAGCGGTTGAAGAGCAGAAATTCGCATGGACAGCGATCCCGAG
TGTGGACGCCTTCTCTTCGATGCATTCTCCTAGAATCGGCCATTTTGTAG
GCGACTATGCGGCATTGGTTGTTTCGAAAGAGGTTCTTCTTATGTTTCCT
GTCAGTGATGCGTTTCCTGAAATTTGGAACACCGTATCTGCAATCGAACT
AACCCGTCCCTCGCGATTGAGAATTGAGGTGGGAAGAAATGATCAAGGCA
CTGTTGTAGGCGCCCTGTTTGTGAATGAGTCTGTTGAGGATGACGCGGAG
AGCGATGCTGTGGCGGCTTACGTTTGA