Ggra9365.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9365.t1
Unique NameGgra9365.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length316
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:103422..104369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703482.1
PFAMsHAD_2,NHL,Thioredoxin_8
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009314,GO:0009416,GO:0009507,GO:0009532,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0010196,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:1990066
Evalue1.6e-82
EggNOG OGsCOG0637@1|root,KOG2914@2759|Eukaryota
Descriptionpseudouridine 5'-phosphatase activity
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9365Ggra9365Gracilaria gracilis GNS1m malegenetig00000883_pilon 103422..104369 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9365.t1.start1Ggra9365.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 103422..103424 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9365.t1.CDS1Ggra9365.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 103422..104369 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9365.t1.exon1Ggra9365.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 103422..104369 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9365.t1.stop1Ggra9365.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 104367..104369 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9365.t1Ggra9365.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 103422..104369 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9365.t1 ID=Ggra9365.t1|Name=Ggra9365.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=316bp
MLKRAKPRVAYLGLPPSSSPISSSQRVAISHNTHTRLKNVAAKRFRGVGG
ISKLGTIVLDNYLGHMERAYFGRAGARCCASVPSTARDYDAVLFDMDGVL
CDSEIPSRHAAVCVFRRFYDVDVQADDFAPFTGTGEANFLAGVANVYGVK
RFDAEKAKQQFFQVYIEDGYVNEMSSFAGIHGLVARVKQLGLKVAVASSA
DRIKVDANLTAIGLPPHHFDYVTSGDEIEHKKPAPDVFLKAARELGVEPR
RCVVVEDAVAGVQAAKSAGMRCIAVSTSLDGDALRRAGADVVRAEPALIE
VVDVFGRDVFDQPPQ*
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spliced messenger RNA

>Ggra9365.t1 ID=Ggra9365.t1|Name=Ggra9365.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=948bp|location=Sequence derived from alignment at tig00000883_pilon:103422..104369+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGAAGCGCGCAAAGCCACGCGTGGCGTACCTGGGCTTACCGCCGTC
GTCGTCGCCAATCTCGTCGTCTCAACGCGTGGCCATCTCGCACAATACGC
ACACGCGCCTGAAGAACGTCGCCGCCAAGCGCTTCCGCGGCGTGGGCGGC
ATCTCCAAGCTGGGCACCATCGTGCTGGACAACTACCTCGGACACATGGA
ACGCGCGTACTTTGGGCGTGCCGGTGCGCGCTGCTGCGCCAGCGTTCCGT
CCACTGCGCGCGATTACGACGCCGTGCTGTTCGATATGGACGGCGTGCTG
TGCGACTCCGAGATACCCAGCCGACATGCGGCTGTGTGCGTGTTCAGGCG
CTTCTACGACGTTGACGTACAGGCGGATGACTTTGCGCCGTTCACCGGCA
CCGGCGAGGCCAACTTTCTGGCCGGCGTCGCGAACGTTTACGGCGTGAAA
CGCTTCGACGCCGAAAAGGCAAAGCAGCAATTTTTCCAGGTGTACATCGA
AGACGGCTACGTCAACGAGATGTCGTCGTTCGCCGGCATCCACGGGCTCG
TCGCGCGCGTCAAGCAGCTGGGGCTCAAGGTGGCGGTGGCATCGTCGGCA
GATCGCATCAAAGTGGACGCAAACCTGACAGCCATCGGACTGCCGCCGCA
CCACTTCGACTACGTGACGAGCGGCGACGAAATCGAGCACAAGAAGCCGG
CGCCCGACGTGTTCCTCAAGGCGGCGCGCGAGCTGGGCGTAGAGCCGCGC
CGCTGCGTGGTGGTGGAGGACGCCGTGGCCGGCGTGCAGGCGGCGAAGAG
CGCGGGCATGAGATGCATCGCCGTCAGCACCAGCCTGGACGGCGACGCGT
TGCGACGCGCGGGCGCGGACGTGGTGCGCGCCGAGCCGGCGCTCATCGAG
GTGGTGGATGTGTTCGGGCGCGACGTGTTCGACCAGCCGCCGCAATAA
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protein sequence of Ggra9365.t1

>Ggra9365.t1 ID=Ggra9365.t1|Name=Ggra9365.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=316bp
MLKRAKPRVAYLGLPPSSSPISSSQRVAISHNTHTRLKNVAAKRFRGVGG
ISKLGTIVLDNYLGHMERAYFGRAGARCCASVPSTARDYDAVLFDMDGVL
CDSEIPSRHAAVCVFRRFYDVDVQADDFAPFTGTGEANFLAGVANVYGVK
RFDAEKAKQQFFQVYIEDGYVNEMSSFAGIHGLVARVKQLGLKVAVASSA
DRIKVDANLTAIGLPPHHFDYVTSGDEIEHKKPAPDVFLKAARELGVEPR
RCVVVEDAVAGVQAAKSAGMRCIAVSTSLDGDALRRAGADVVRAEPALIE
VVDVFGRDVFDQPPQ*
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mRNA from alignment at tig00000883_pilon:103422..104369+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9365.t1 ID=Ggra9365.t1|Name=Ggra9365.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=948bp|location=Sequence derived from alignment at tig00000883_pilon:103422..104369+ (Gracilaria gracilis GNS1m male)
ATGCTGAAGCGCGCAAAGCCACGCGTGGCGTACCTGGGCTTACCGCCGTC
GTCGTCGCCAATCTCGTCGTCTCAACGCGTGGCCATCTCGCACAATACGC
ACACGCGCCTGAAGAACGTCGCCGCCAAGCGCTTCCGCGGCGTGGGCGGC
ATCTCCAAGCTGGGCACCATCGTGCTGGACAACTACCTCGGACACATGGA
ACGCGCGTACTTTGGGCGTGCCGGTGCGCGCTGCTGCGCCAGCGTTCCGT
CCACTGCGCGCGATTACGACGCCGTGCTGTTCGATATGGACGGCGTGCTG
TGCGACTCCGAGATACCCAGCCGACATGCGGCTGTGTGCGTGTTCAGGCG
CTTCTACGACGTTGACGTACAGGCGGATGACTTTGCGCCGTTCACCGGCA
CCGGCGAGGCCAACTTTCTGGCCGGCGTCGCGAACGTTTACGGCGTGAAA
CGCTTCGACGCCGAAAAGGCAAAGCAGCAATTTTTCCAGGTGTACATCGA
AGACGGCTACGTCAACGAGATGTCGTCGTTCGCCGGCATCCACGGGCTCG
TCGCGCGCGTCAAGCAGCTGGGGCTCAAGGTGGCGGTGGCATCGTCGGCA
GATCGCATCAAAGTGGACGCAAACCTGACAGCCATCGGACTGCCGCCGCA
CCACTTCGACTACGTGACGAGCGGCGACGAAATCGAGCACAAGAAGCCGG
CGCCCGACGTGTTCCTCAAGGCGGCGCGCGAGCTGGGCGTAGAGCCGCGC
CGCTGCGTGGTGGTGGAGGACGCCGTGGCCGGCGTGCAGGCGGCGAAGAG
CGCGGGCATGAGATGCATCGCCGTCAGCACCAGCCTGGACGGCGACGCGT
TGCGACGCGCGGGCGCGGACGTGGTGCGCGCCGAGCCGGCGCTCATCGAG
GTGGTGGATGTGTTCGGGCGCGACGTGTTCGACCAGCCGCCGCAATAA
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Coding sequence (CDS) from alignment at tig00000883_pilon:103422..104369+

>Ggra9365.t1 ID=Ggra9365.t1|Name=Ggra9365.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=948bp|location=Sequence derived from alignment at tig00000883_pilon:103422..104369+ (Gracilaria gracilis GNS1m male)
ATGCTGAAGCGCGCAAAGCCACGCGTGGCGTACCTGGGCTTACCGCCGTC
GTCGTCGCCAATCTCGTCGTCTCAACGCGTGGCCATCTCGCACAATACGC
ACACGCGCCTGAAGAACGTCGCCGCCAAGCGCTTCCGCGGCGTGGGCGGC
ATCTCCAAGCTGGGCACCATCGTGCTGGACAACTACCTCGGACACATGGA
ACGCGCGTACTTTGGGCGTGCCGGTGCGCGCTGCTGCGCCAGCGTTCCGT
CCACTGCGCGCGATTACGACGCCGTGCTGTTCGATATGGACGGCGTGCTG
TGCGACTCCGAGATACCCAGCCGACATGCGGCTGTGTGCGTGTTCAGGCG
CTTCTACGACGTTGACGTACAGGCGGATGACTTTGCGCCGTTCACCGGCA
CCGGCGAGGCCAACTTTCTGGCCGGCGTCGCGAACGTTTACGGCGTGAAA
CGCTTCGACGCCGAAAAGGCAAAGCAGCAATTTTTCCAGGTGTACATCGA
AGACGGCTACGTCAACGAGATGTCGTCGTTCGCCGGCATCCACGGGCTCG
TCGCGCGCGTCAAGCAGCTGGGGCTCAAGGTGGCGGTGGCATCGTCGGCA
GATCGCATCAAAGTGGACGCAAACCTGACAGCCATCGGACTGCCGCCGCA
CCACTTCGACTACGTGACGAGCGGCGACGAAATCGAGCACAAGAAGCCGG
CGCCCGACGTGTTCCTCAAGGCGGCGCGCGAGCTGGGCGTAGAGCCGCGC
CGCTGCGTGGTGGTGGAGGACGCCGTGGCCGGCGTGCAGGCGGCGAAGAG
CGCGGGCATGAGATGCATCGCCGTCAGCACCAGCCTGGACGGCGACGCGT
TGCGACGCGCGGGCGCGGACGTGGTGCGCGCCGAGCCGGCGCTCATCGAG
GTGGTGGATGTGTTCGGGCGCGACGTGTTCGACCAGCCGCCGCAATAA
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