Ggra9352.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9352.t1
Unique Name	Ggra9352.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	688

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000883_pilon	contig	tig00000883_pilon:61955..64102 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9352	Ggra9352	Gracilaria gracilis GNS1m male	gene	tig00000883_pilon 61955..64102 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9352.t1	Ggra9352.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000883_pilon 61955..64102 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9352.t1.start1	Ggra9352.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000883_pilon 61955..61957 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9352.t1.CDS1	Ggra9352.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000883_pilon 61955..63920 +
Ggra9352.t1.CDS2	Ggra9352.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000883_pilon 64005..64102 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9352.t1.exon1	Ggra9352.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000883_pilon 61955..63920 +
Ggra9352.t1.exon2	Ggra9352.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000883_pilon 64005..64102 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9352.t1.intron1	Ggra9352.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000883_pilon 63921..64004 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9352.t1.stop1	Ggra9352.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000883_pilon 64100..64102 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000883_pilon:61955..64102+
coding sequence from alignment at tig00000883_pilon:61955..64102+

mRNA sequence

>Ggra9352.t1 ID=Ggra9352.t1|Name=Ggra9352.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=688bp
MRDGCHEALSRKLPSVAKRQRTLTVAPDGRVFLATDASVSALHCAAALSL
CAAPLHRSHSPFHPHYRPLYSARGVSAPALAHQFVCVNHQPPWRKDTLLN
FTDVVSLAVLQCGFLAVVFADGALHVFAARVDHHYEGGWGGAWAAWHHFP
VLLAPAFDLKSICTAAVLIPSTSVPCHILVVARASGVYIYDEHDLNAARD
APIPPLACLSTEWSNVLHTCDTVPVAGPQSITLVAVAHEHGRLALHAVSA
DESAQRLLQHSLLWQTDLSAPITSLSFSANSARKATLALAVAVGNDLILV
EWGDGCAIHHQQWQHPIVSRVKQAHQSLLSAAHVMADGSVLSAGTDGTLL
RWSIHATRGQQSELAPSVPNSVLVEQQQDAVEPIMAAMPTVNGFCMLVLT
TNFRSRTEVGEPSKGNIRKYLGSGRRSSISLLRLPMTEDVSALDEAIGNC
VKRFLSATWMGRGISMWDVELFLGGHDNEKSGLTQKLLNRYEWLLEIHNY
VENGKENDMERHPIWLRIQRARVLLWFGRIILRSGMTNVDEIDRLNNVVA
SLRKYLLCMHFDMCISHVLLHGDCVKKFTEMDLKSFESMCEFVAVCSSLT
CDSAAMQQRVVEARELLADRVSDEWCSGTICPVCECEDEQNMLIAEREEM
TAFSCTQAVRHEFSWIDRANKCALCQCDLVAANVECV*

spliced messenger RNA

>Ggra9352.t1 ID=Ggra9352.t1|Name=Ggra9352.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2064bp|location=Sequence derived from alignment at tig00000883_pilon:61955..64102+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGACGGCTGCCACGAAGCGCTGAGTCGCAAGTTACCGTCCGTGGC
AAAGCGTCAGCGCACGCTCACCGTCGCGCCCGACGGGCGCGTGTTTCTGG
CCACCGATGCCTCCGTCAGCGCGCTCCACTGCGCAGCCGCGCTCAGTCTG
TGCGCGGCGCCGCTTCACCGCTCGCACTCGCCGTTTCACCCGCACTATCG
CCCGCTGTACTCCGCGCGCGGCGTGAGCGCGCCTGCGCTTGCGCACCAGT
TTGTTTGCGTCAATCACCAGCCGCCGTGGCGTAAGGATACCTTGCTCAAC
TTCACCGACGTCGTTTCGCTCGCTGTTTTGCAGTGCGGCTTTCTTGCTGT
CGTGTTTGCGGACGGCGCTTTGCATGTGTTTGCTGCTCGCGTTGATCATC
ACTATGAGGGCGGCTGGGGTGGCGCTTGGGCGGCGTGGCATCATTTTCCA
GTCTTGCTTGCGCCGGCGTTTGATTTGAAGAGCATTTGCACCGCGGCAGT
GCTCATTCCTTCTACCTCTGTGCCTTGCCACATCTTGGTCGTCGCGCGCG
CGTCTGGTGTGTATATTTACGATGAGCATGATCTCAACGCCGCGCGTGAT
GCCCCGATTCCTCCCTTGGCGTGCTTGTCCACCGAGTGGAGTAATGTGCT
TCACACTTGCGATACCGTGCCAGTTGCGGGCCCTCAATCCATCACGCTGG
TCGCTGTGGCTCACGAGCACGGCAGGCTTGCACTGCATGCAGTCAGTGCC
GATGAGAGCGCCCAACGACTTTTGCAGCACAGCTTGTTGTGGCAAACCGA
TCTGTCCGCCCCCATAACCTCACTGTCCTTCTCCGCCAACAGCGCGCGGA
AAGCAACGTTAGCCCTTGCAGTTGCCGTTGGTAACGACTTAATCCTCGTG
GAATGGGGCGACGGCTGTGCCATTCATCACCAGCAGTGGCAACATCCGAT
TGTTTCACGCGTGAAGCAGGCCCATCAATCGCTGCTCTCTGCGGCACATG
TCATGGCCGACGGCTCCGTGTTGAGTGCTGGCACGGATGGCACCTTGCTT
CGATGGAGCATCCACGCTACGCGTGGTCAGCAATCGGAGCTTGCGCCATC
CGTACCCAACAGTGTGCTTGTGGAGCAACAACAAGATGCGGTGGAACCGA
TCATGGCTGCCATGCCAACGGTCAACGGCTTTTGTATGCTTGTGTTGACC
ACCAATTTCCGATCTCGAACGGAGGTGGGGGAACCGTCGAAAGGGAACAT
TCGCAAGTATCTAGGATCGGGAAGACGCTCGTCTATTTCATTGCTGAGGT
TGCCCATGACGGAAGATGTGAGCGCGCTTGATGAGGCGATTGGAAATTGT
GTAAAACGCTTTCTGTCTGCCACATGGATGGGCCGTGGAATTAGCATGTG
GGATGTTGAATTGTTTCTTGGTGGCCACGATAACGAGAAGAGCGGTCTCA
CGCAAAAGTTGCTAAATCGATACGAATGGCTACTTGAAATTCACAATTAC
GTTGAGAACGGAAAGGAAAACGATATGGAACGGCATCCGATATGGTTGCG
AATTCAACGGGCAAGAGTGTTGCTTTGGTTTGGAAGGATTATTTTGCGTA
GTGGGATGACCAACGTTGATGAGATAGATCGTTTGAATAACGTAGTTGCT
TCACTTCGAAAGTATTTACTTTGCATGCATTTCGACATGTGCATCAGTCA
TGTTCTTTTGCACGGCGATTGTGTGAAGAAGTTTACAGAAATGGACTTGA
AGTCGTTTGAAAGCATGTGTGAGTTTGTGGCAGTGTGCTCGTCTCTAACA
TGTGATTCAGCTGCGATGCAACAACGTGTGGTAGAAGCAAGAGAATTGCT
GGCGGATCGGGTGAGCGATGAGTGGTGCAGTGGGACAATTTGTCCGGTTT
GCGAGTGTGAGGATGAGCAGAACATGCTGATTGCAGAGCGTGAAGAAATG
ACAGCGTTTTCATGTACGCAAGCAGTTCGACATGAGTTCAGCTGGATTGA
TAGGGCGAACAAATGCGCGTTATGTCAATGTGATCTAGTGGCAGCCAATG
TAGAATGTGTGTAA

protein sequence of Ggra9352.t1

>Ggra9352.t1 ID=Ggra9352.t1|Name=Ggra9352.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=688bp
MRDGCHEALSRKLPSVAKRQRTLTVAPDGRVFLATDASVSALHCAAALSL
CAAPLHRSHSPFHPHYRPLYSARGVSAPALAHQFVCVNHQPPWRKDTLLN
FTDVVSLAVLQCGFLAVVFADGALHVFAARVDHHYEGGWGGAWAAWHHFP
VLLAPAFDLKSICTAAVLIPSTSVPCHILVVARASGVYIYDEHDLNAARD
APIPPLACLSTEWSNVLHTCDTVPVAGPQSITLVAVAHEHGRLALHAVSA
DESAQRLLQHSLLWQTDLSAPITSLSFSANSARKATLALAVAVGNDLILV
EWGDGCAIHHQQWQHPIVSRVKQAHQSLLSAAHVMADGSVLSAGTDGTLL
RWSIHATRGQQSELAPSVPNSVLVEQQQDAVEPIMAAMPTVNGFCMLVLT
TNFRSRTEVGEPSKGNIRKYLGSGRRSSISLLRLPMTEDVSALDEAIGNC
VKRFLSATWMGRGISMWDVELFLGGHDNEKSGLTQKLLNRYEWLLEIHNY
VENGKENDMERHPIWLRIQRARVLLWFGRIILRSGMTNVDEIDRLNNVVA
SLRKYLLCMHFDMCISHVLLHGDCVKKFTEMDLKSFESMCEFVAVCSSLT
CDSAAMQQRVVEARELLADRVSDEWCSGTICPVCECEDEQNMLIAEREEM
TAFSCTQAVRHEFSWIDRANKCALCQCDLVAANVECV*

mRNA from alignment at tig00000883_pilon:61955..64102+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9352.t1 ID=Ggra9352.t1|Name=Ggra9352.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2148bp|location=Sequence derived from alignment at tig00000883_pilon:61955..64102+ (Gracilaria gracilis GNS1m male)
ATGCGCGACGGCTGCCACGAAGCGCTGAGTCGCAAGTTACCGTCCGTGGC
AAAGCGTCAGCGCACGCTCACCGTCGCGCCCGACGGGCGCGTGTTTCTGG
CCACCGATGCCTCCGTCAGCGCGCTCCACTGCGCAGCCGCGCTCAGTCTG
TGCGCGGCGCCGCTTCACCGCTCGCACTCGCCGTTTCACCCGCACTATCG
CCCGCTGTACTCCGCGCGCGGCGTGAGCGCGCCTGCGCTTGCGCACCAGT
TTGTTTGCGTCAATCACCAGCCGCCGTGGCGTAAGGATACCTTGCTCAAC
TTCACCGACGTCGTTTCGCTCGCTGTTTTGCAGTGCGGCTTTCTTGCTGT
CGTGTTTGCGGACGGCGCTTTGCATGTGTTTGCTGCTCGCGTTGATCATC
ACTATGAGGGCGGCTGGGGTGGCGCTTGGGCGGCGTGGCATCATTTTCCA
GTCTTGCTTGCGCCGGCGTTTGATTTGAAGAGCATTTGCACCGCGGCAGT
GCTCATTCCTTCTACCTCTGTGCCTTGCCACATCTTGGTCGTCGCGCGCG
CGTCTGGTGTGTATATTTACGATGAGCATGATCTCAACGCCGCGCGTGAT
GCCCCGATTCCTCCCTTGGCGTGCTTGTCCACCGAGTGGAGTAATGTGCT
TCACACTTGCGATACCGTGCCAGTTGCGGGCCCTCAATCCATCACGCTGG
TCGCTGTGGCTCACGAGCACGGCAGGCTTGCACTGCATGCAGTCAGTGCC
GATGAGAGCGCCCAACGACTTTTGCAGCACAGCTTGTTGTGGCAAACCGA
TCTGTCCGCCCCCATAACCTCACTGTCCTTCTCCGCCAACAGCGCGCGGA
AAGCAACGTTAGCCCTTGCAGTTGCCGTTGGTAACGACTTAATCCTCGTG
GAATGGGGCGACGGCTGTGCCATTCATCACCAGCAGTGGCAACATCCGAT
TGTTTCACGCGTGAAGCAGGCCCATCAATCGCTGCTCTCTGCGGCACATG
TCATGGCCGACGGCTCCGTGTTGAGTGCTGGCACGGATGGCACCTTGCTT
CGATGGAGCATCCACGCTACGCGTGGTCAGCAATCGGAGCTTGCGCCATC
CGTACCCAACAGTGTGCTTGTGGAGCAACAACAAGATGCGGTGGAACCGA
TCATGGCTGCCATGCCAACGGTCAACGGCTTTTGTATGCTTGTGTTGACC
ACCAATTTCCGATCTCGAACGGAGGTGGGGGAACCGTCGAAAGGGAACAT
TCGCAAGTATCTAGGATCGGGAAGACGCTCGTCTATTTCATTGCTGAGGT
TGCCCATGACGGAAGATGTGAGCGCGCTTGATGAGGCGATTGGAAATTGT
GTAAAACGCTTTCTGTCTGCCACATGGATGGGCCGTGGAATTAGCATGTG
GGATGTTGAATTGTTTCTTGGTGGCCACGATAACGAGAAGAGCGGTCTCA
CGCAAAAGTTGCTAAATCGATACGAATGGCTACTTGAAATTCACAATTAC
GTTGAGAACGGAAAGGAAAACGATATGGAACGGCATCCGATATGGTTGCG
AATTCAACGGGCAAGAGTGTTGCTTTGGTTTGGAAGGATTATTTTGCGTA
GTGGGATGACCAACGTTGATGAGATAGATCGTTTGAATAACGTAGTTGCT
TCACTTCGAAAGTATTTACTTTGCATGCATTTCGACATGTGCATCAGTCA
TGTTCTTTTGCACGGCGATTGTGTGAAGAAGTTTACAGAAATGGACTTGA
AGTCGTTTGAAAGCATGTGTGAGTTTGTGGCAGTGTGCTCGTCTCTAACA
TGTGATTCAGCTGCGATGCAACAACGTGTGGTAGAAGCAAGAGAATTGCT
GGCGGATCGGGTGAGCGATGAGTGGTGCAGTGGGACAATTTGTCCGGTTT
GCGAGTGTGAGGATGAGCAGAACATGCTGATTGCAGAGCGTGAAGAAATG
ACAGCGTTTTCATGTAGTAAGAACGATCAGTTTGTGCGATGCGTGAAGAG
TAGTATTGCCGTGACTGACGTGGTACCATTACAATGCGTTGGGTGTGAAG
CGCAAGCAGTTCGACATGAGTTCAGCTGGATTGATAGGGCGAACAAATGC
GCGTTATGTCAATGTGATCTAGTGGCAGCCAATGTAGAATGTGTGTAA

Coding sequence (CDS) from alignment at tig00000883_pilon:61955..64102+

>Ggra9352.t1 ID=Ggra9352.t1|Name=Ggra9352.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2064bp|location=Sequence derived from alignment at tig00000883_pilon:61955..64102+ (Gracilaria gracilis GNS1m male)
ATGCGCGACGGCTGCCACGAAGCGCTGAGTCGCAAGTTACCGTCCGTGGC
AAAGCGTCAGCGCACGCTCACCGTCGCGCCCGACGGGCGCGTGTTTCTGG
CCACCGATGCCTCCGTCAGCGCGCTCCACTGCGCAGCCGCGCTCAGTCTG
TGCGCGGCGCCGCTTCACCGCTCGCACTCGCCGTTTCACCCGCACTATCG
CCCGCTGTACTCCGCGCGCGGCGTGAGCGCGCCTGCGCTTGCGCACCAGT
TTGTTTGCGTCAATCACCAGCCGCCGTGGCGTAAGGATACCTTGCTCAAC
TTCACCGACGTCGTTTCGCTCGCTGTTTTGCAGTGCGGCTTTCTTGCTGT
CGTGTTTGCGGACGGCGCTTTGCATGTGTTTGCTGCTCGCGTTGATCATC
ACTATGAGGGCGGCTGGGGTGGCGCTTGGGCGGCGTGGCATCATTTTCCA
GTCTTGCTTGCGCCGGCGTTTGATTTGAAGAGCATTTGCACCGCGGCAGT
GCTCATTCCTTCTACCTCTGTGCCTTGCCACATCTTGGTCGTCGCGCGCG
CGTCTGGTGTGTATATTTACGATGAGCATGATCTCAACGCCGCGCGTGAT
GCCCCGATTCCTCCCTTGGCGTGCTTGTCCACCGAGTGGAGTAATGTGCT
TCACACTTGCGATACCGTGCCAGTTGCGGGCCCTCAATCCATCACGCTGG
TCGCTGTGGCTCACGAGCACGGCAGGCTTGCACTGCATGCAGTCAGTGCC
GATGAGAGCGCCCAACGACTTTTGCAGCACAGCTTGTTGTGGCAAACCGA
TCTGTCCGCCCCCATAACCTCACTGTCCTTCTCCGCCAACAGCGCGCGGA
AAGCAACGTTAGCCCTTGCAGTTGCCGTTGGTAACGACTTAATCCTCGTG
GAATGGGGCGACGGCTGTGCCATTCATCACCAGCAGTGGCAACATCCGAT
TGTTTCACGCGTGAAGCAGGCCCATCAATCGCTGCTCTCTGCGGCACATG
TCATGGCCGACGGCTCCGTGTTGAGTGCTGGCACGGATGGCACCTTGCTT
CGATGGAGCATCCACGCTACGCGTGGTCAGCAATCGGAGCTTGCGCCATC
CGTACCCAACAGTGTGCTTGTGGAGCAACAACAAGATGCGGTGGAACCGA
TCATGGCTGCCATGCCAACGGTCAACGGCTTTTGTATGCTTGTGTTGACC
ACCAATTTCCGATCTCGAACGGAGGTGGGGGAACCGTCGAAAGGGAACAT
TCGCAAGTATCTAGGATCGGGAAGACGCTCGTCTATTTCATTGCTGAGGT
TGCCCATGACGGAAGATGTGAGCGCGCTTGATGAGGCGATTGGAAATTGT
GTAAAACGCTTTCTGTCTGCCACATGGATGGGCCGTGGAATTAGCATGTG
GGATGTTGAATTGTTTCTTGGTGGCCACGATAACGAGAAGAGCGGTCTCA
CGCAAAAGTTGCTAAATCGATACGAATGGCTACTTGAAATTCACAATTAC
GTTGAGAACGGAAAGGAAAACGATATGGAACGGCATCCGATATGGTTGCG
AATTCAACGGGCAAGAGTGTTGCTTTGGTTTGGAAGGATTATTTTGCGTA
GTGGGATGACCAACGTTGATGAGATAGATCGTTTGAATAACGTAGTTGCT
TCACTTCGAAAGTATTTACTTTGCATGCATTTCGACATGTGCATCAGTCA
TGTTCTTTTGCACGGCGATTGTGTGAAGAAGTTTACAGAAATGGACTTGA
AGTCGTTTGAAAGCATGTGTGAGTTTGTGGCAGTGTGCTCGTCTCTAACA
TGTGATTCAGCTGCGATGCAACAACGTGTGGTAGAAGCAAGAGAATTGCT
GGCGGATCGGGTGAGCGATGAGTGGTGCAGTGGGACAATTTGTCCGGTTT
GCGAGTGTGAGGATGAGCAGAACATGCTGATTGCAGAGCGTGAAGAAATG
ACAGCGTTTTCATGTACGCAAGCAGTTCGACATGAGTTCAGCTGGATTGA
TAGGGCGAACAAATGCGCGTTATGTCAATGTGATCTAGTGGCAGCCAATG
TAGAATGTGTGTAA