Ggra9384.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9384.t1
Unique NameGgra9384.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length453
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:279901..281259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707083.1
Preferred nameU2AF2
PFAMsRRM_1
Max annot lvl2759|Eukaryota
KEGG koko:K12471,ko:K12837
KEGG Pathwayko03040,ko04144,map03040,map04144
GOsGO:0000003,GO:0000243,GO:0000245,GO:0000375,GO:0000377,GO:0000381,GO:0000389,GO:0000398,GO:0002119,GO:0002164,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007275,GO:0007276,GO:0007281,GO:0008104,GO:0008150,GO:0008152,GO:0008187,GO:0008380,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009892,GO:0009893,GO:0009987,GO:0010171,GO:0010172,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0019899,GO:0019904,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030628,GO:0031123,GO:0031124,GO:0031323,GO:0031324,GO:0031325,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031503,GO:0031974,GO:0031981,GO:0032239,GO:0032241,GO:0032268,GO:0032269,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032991,GO:0033036,GO:0033119,GO:0033120,GO:0034613,GO:0034622,GO:0034641,GO:0036002,GO:0040007,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0045184,GO:0045934,GO:0045935,GO:0046483,GO:0046822,GO:0046824,GO:0046831,GO:0046833,GO:0046907,GO:0048024,GO:0048025,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048589,GO:0048598,GO:0048609,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050684,GO:0050686,GO:0050789,GO:0050794,GO:0051028,GO:0051049,GO:0051050,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051641,GO:0051649,GO:0051704,GO:0060255,GO:0060341,GO:0060968,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070742,GO:0071004,GO:0071010,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0080090,GO:0089701,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1903311,GO:1903312,GO:1903320,GO:1903321,GO:1990904
Evalue2.37e-98
EggNOG OGsKOG0120@1|root,KOG0120@2759|Eukaryota
Descriptionpre-mRNA 3'-splice site binding
COG categoryJ
BRITEko00000,ko00001,ko03041,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9384Ggra9384Gracilaria gracilis GNS1m malegenetig00000883_pilon 279901..281259 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9384.t1.start1Ggra9384.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 279901..279903 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9384.t1.CDS1Ggra9384.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 279901..281259 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9384.t1.exon1Ggra9384.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 279901..281259 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9384.t1.stop1Ggra9384.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 281257..281259 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9384.t1Ggra9384.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 279901..281259 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9384.t1 ID=Ggra9384.t1|Name=Ggra9384.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=453bp
MDHSRRERRASPPRRRRRRPTLWDVREFPYGIPVPPAGGSTAFAPHVGRS
VAQAPRVEANRAPIPGPSDIVHAPVEGESGPLAGINIEALKALLNPSGVQ
AVTPTATSPIPVVTSGDTSVQSTRHARRLYVGNLPADTTDAQIEDFFNRA
LKASRGVESEGNAVISVYTNLEKRFAFIETRTIREAAAGLALDGVKFGDM
FLRLRRPNDYNATLAGDPRPPDGFNPSILGIVSTQVSDGPNKVFVGGIPY
NLTEDQIKNLLSSYGALAAFNLIKEPNTGMSKGFAFFEYVDADVVDAACE
GLHGMQVGDKTLTVRRATHTNGTATHASGMLNSMGMNGAGTVSKELLLPD
ISRVVAVYDAVTEEELEDDDEYSEIVDDMRDEAGKLGGLEEVLIARPRDG
ERLRRAVGKVFVKFVNRDDAERARLTLHGRRFGQRVVRAEYFNEARFDRR
LF*
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spliced messenger RNA

>Ggra9384.t1 ID=Ggra9384.t1|Name=Ggra9384.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1359bp|location=Sequence derived from alignment at tig00000883_pilon:279901..281259+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCATTCGCGTCGCGAACGGCGGGCTTCTCCTCCTCGTCGACGCCG
TCGTCGACCGACGTTGTGGGACGTGCGAGAGTTCCCGTACGGTATTCCGG
TTCCTCCGGCTGGTGGATCCACGGCGTTTGCGCCACATGTTGGCAGAAGT
GTTGCGCAGGCGCCACGAGTGGAAGCGAATCGCGCTCCGATCCCTGGTCC
TAGCGATATAGTACACGCGCCAGTTGAAGGAGAGAGTGGACCATTGGCTG
GCATAAACATCGAAGCGTTGAAGGCGTTACTGAATCCTTCGGGCGTACAG
GCTGTTACTCCCACAGCGACGAGCCCGATTCCGGTTGTTACGAGCGGAGA
TACGAGTGTGCAGTCAACAAGACATGCTCGCCGATTATACGTGGGAAATC
TACCGGCCGACACTACGGATGCGCAGATCGAGGACTTTTTCAACCGGGCG
TTAAAGGCATCCCGTGGCGTGGAATCGGAAGGAAATGCTGTGATTTCTGT
GTACACGAATCTGGAGAAGCGGTTTGCTTTCATCGAGACGCGTACAATAA
GAGAAGCTGCGGCGGGTTTGGCTTTGGATGGGGTGAAGTTTGGTGATATG
TTTCTACGATTACGAAGACCTAACGATTACAATGCTACATTAGCCGGGGA
TCCACGTCCGCCCGACGGCTTTAATCCGAGCATTCTGGGGATTGTGTCAA
CGCAGGTTTCAGATGGGCCGAACAAGGTGTTTGTTGGCGGTATACCGTAT
AACCTGACGGAAGACCAGATCAAAAACTTGTTATCAAGCTACGGGGCTCT
GGCTGCATTTAACCTGATTAAAGAGCCCAACACGGGCATGAGCAAGGGCT
TTGCGTTCTTCGAGTACGTTGACGCGGACGTAGTGGACGCAGCGTGCGAG
GGACTGCACGGGATGCAAGTGGGTGACAAGACGCTGACCGTGCGCAGAGC
CACGCACACAAACGGCACGGCGACACACGCGTCCGGCATGCTGAATTCGA
TGGGAATGAACGGTGCGGGGACAGTGAGCAAGGAGCTGTTATTGCCGGAC
ATCTCGCGCGTGGTGGCGGTATACGACGCCGTGACGGAGGAGGAGCTGGA
GGACGACGACGAGTACAGCGAGATTGTGGACGACATGCGCGACGAGGCGG
GCAAGTTGGGCGGGCTGGAGGAGGTGTTGATCGCTCGTCCGCGCGACGGC
GAACGGCTGAGAAGGGCAGTGGGCAAGGTGTTCGTCAAGTTTGTGAACCG
GGACGACGCGGAGCGCGCGCGGCTGACGTTGCACGGGAGGCGCTTCGGGC
AGCGCGTCGTGCGCGCCGAGTACTTCAATGAGGCGCGTTTTGATCGCCGC
CTGTTCTGA
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protein sequence of Ggra9384.t1

>Ggra9384.t1 ID=Ggra9384.t1|Name=Ggra9384.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=453bp
MDHSRRERRASPPRRRRRRPTLWDVREFPYGIPVPPAGGSTAFAPHVGRS
VAQAPRVEANRAPIPGPSDIVHAPVEGESGPLAGINIEALKALLNPSGVQ
AVTPTATSPIPVVTSGDTSVQSTRHARRLYVGNLPADTTDAQIEDFFNRA
LKASRGVESEGNAVISVYTNLEKRFAFIETRTIREAAAGLALDGVKFGDM
FLRLRRPNDYNATLAGDPRPPDGFNPSILGIVSTQVSDGPNKVFVGGIPY
NLTEDQIKNLLSSYGALAAFNLIKEPNTGMSKGFAFFEYVDADVVDAACE
GLHGMQVGDKTLTVRRATHTNGTATHASGMLNSMGMNGAGTVSKELLLPD
ISRVVAVYDAVTEEELEDDDEYSEIVDDMRDEAGKLGGLEEVLIARPRDG
ERLRRAVGKVFVKFVNRDDAERARLTLHGRRFGQRVVRAEYFNEARFDRR
LF*
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mRNA from alignment at tig00000883_pilon:279901..281259+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9384.t1 ID=Ggra9384.t1|Name=Ggra9384.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1359bp|location=Sequence derived from alignment at tig00000883_pilon:279901..281259+ (Gracilaria gracilis GNS1m male)
ATGGATCATTCGCGTCGCGAACGGCGGGCTTCTCCTCCTCGTCGACGCCG
TCGTCGACCGACGTTGTGGGACGTGCGAGAGTTCCCGTACGGTATTCCGG
TTCCTCCGGCTGGTGGATCCACGGCGTTTGCGCCACATGTTGGCAGAAGT
GTTGCGCAGGCGCCACGAGTGGAAGCGAATCGCGCTCCGATCCCTGGTCC
TAGCGATATAGTACACGCGCCAGTTGAAGGAGAGAGTGGACCATTGGCTG
GCATAAACATCGAAGCGTTGAAGGCGTTACTGAATCCTTCGGGCGTACAG
GCTGTTACTCCCACAGCGACGAGCCCGATTCCGGTTGTTACGAGCGGAGA
TACGAGTGTGCAGTCAACAAGACATGCTCGCCGATTATACGTGGGAAATC
TACCGGCCGACACTACGGATGCGCAGATCGAGGACTTTTTCAACCGGGCG
TTAAAGGCATCCCGTGGCGTGGAATCGGAAGGAAATGCTGTGATTTCTGT
GTACACGAATCTGGAGAAGCGGTTTGCTTTCATCGAGACGCGTACAATAA
GAGAAGCTGCGGCGGGTTTGGCTTTGGATGGGGTGAAGTTTGGTGATATG
TTTCTACGATTACGAAGACCTAACGATTACAATGCTACATTAGCCGGGGA
TCCACGTCCGCCCGACGGCTTTAATCCGAGCATTCTGGGGATTGTGTCAA
CGCAGGTTTCAGATGGGCCGAACAAGGTGTTTGTTGGCGGTATACCGTAT
AACCTGACGGAAGACCAGATCAAAAACTTGTTATCAAGCTACGGGGCTCT
GGCTGCATTTAACCTGATTAAAGAGCCCAACACGGGCATGAGCAAGGGCT
TTGCGTTCTTCGAGTACGTTGACGCGGACGTAGTGGACGCAGCGTGCGAG
GGACTGCACGGGATGCAAGTGGGTGACAAGACGCTGACCGTGCGCAGAGC
CACGCACACAAACGGCACGGCGACACACGCGTCCGGCATGCTGAATTCGA
TGGGAATGAACGGTGCGGGGACAGTGAGCAAGGAGCTGTTATTGCCGGAC
ATCTCGCGCGTGGTGGCGGTATACGACGCCGTGACGGAGGAGGAGCTGGA
GGACGACGACGAGTACAGCGAGATTGTGGACGACATGCGCGACGAGGCGG
GCAAGTTGGGCGGGCTGGAGGAGGTGTTGATCGCTCGTCCGCGCGACGGC
GAACGGCTGAGAAGGGCAGTGGGCAAGGTGTTCGTCAAGTTTGTGAACCG
GGACGACGCGGAGCGCGCGCGGCTGACGTTGCACGGGAGGCGCTTCGGGC
AGCGCGTCGTGCGCGCCGAGTACTTCAATGAGGCGCGTTTTGATCGCCGC
CTGTTCTGA
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Coding sequence (CDS) from alignment at tig00000883_pilon:279901..281259+

>Ggra9384.t1 ID=Ggra9384.t1|Name=Ggra9384.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1359bp|location=Sequence derived from alignment at tig00000883_pilon:279901..281259+ (Gracilaria gracilis GNS1m male)
ATGGATCATTCGCGTCGCGAACGGCGGGCTTCTCCTCCTCGTCGACGCCG
TCGTCGACCGACGTTGTGGGACGTGCGAGAGTTCCCGTACGGTATTCCGG
TTCCTCCGGCTGGTGGATCCACGGCGTTTGCGCCACATGTTGGCAGAAGT
GTTGCGCAGGCGCCACGAGTGGAAGCGAATCGCGCTCCGATCCCTGGTCC
TAGCGATATAGTACACGCGCCAGTTGAAGGAGAGAGTGGACCATTGGCTG
GCATAAACATCGAAGCGTTGAAGGCGTTACTGAATCCTTCGGGCGTACAG
GCTGTTACTCCCACAGCGACGAGCCCGATTCCGGTTGTTACGAGCGGAGA
TACGAGTGTGCAGTCAACAAGACATGCTCGCCGATTATACGTGGGAAATC
TACCGGCCGACACTACGGATGCGCAGATCGAGGACTTTTTCAACCGGGCG
TTAAAGGCATCCCGTGGCGTGGAATCGGAAGGAAATGCTGTGATTTCTGT
GTACACGAATCTGGAGAAGCGGTTTGCTTTCATCGAGACGCGTACAATAA
GAGAAGCTGCGGCGGGTTTGGCTTTGGATGGGGTGAAGTTTGGTGATATG
TTTCTACGATTACGAAGACCTAACGATTACAATGCTACATTAGCCGGGGA
TCCACGTCCGCCCGACGGCTTTAATCCGAGCATTCTGGGGATTGTGTCAA
CGCAGGTTTCAGATGGGCCGAACAAGGTGTTTGTTGGCGGTATACCGTAT
AACCTGACGGAAGACCAGATCAAAAACTTGTTATCAAGCTACGGGGCTCT
GGCTGCATTTAACCTGATTAAAGAGCCCAACACGGGCATGAGCAAGGGCT
TTGCGTTCTTCGAGTACGTTGACGCGGACGTAGTGGACGCAGCGTGCGAG
GGACTGCACGGGATGCAAGTGGGTGACAAGACGCTGACCGTGCGCAGAGC
CACGCACACAAACGGCACGGCGACACACGCGTCCGGCATGCTGAATTCGA
TGGGAATGAACGGTGCGGGGACAGTGAGCAAGGAGCTGTTATTGCCGGAC
ATCTCGCGCGTGGTGGCGGTATACGACGCCGTGACGGAGGAGGAGCTGGA
GGACGACGACGAGTACAGCGAGATTGTGGACGACATGCGCGACGAGGCGG
GCAAGTTGGGCGGGCTGGAGGAGGTGTTGATCGCTCGTCCGCGCGACGGC
GAACGGCTGAGAAGGGCAGTGGGCAAGGTGTTCGTCAAGTTTGTGAACCG
GGACGACGCGGAGCGCGCGCGGCTGACGTTGCACGGGAGGCGCTTCGGGC
AGCGCGTCGTGCGCGCCGAGTACTTCAATGAGGCGCGTTTTGATCGCCGC
CTGTTCTGA
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