Ggra9382.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9382.t1
Unique Name	Ggra9382.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	429

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000883_pilon	contig	tig00000883_pilon:273542..274828 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9382	Ggra9382	Gracilaria gracilis GNS1m male	gene	tig00000883_pilon 273542..274828 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9382.t1.start1	Ggra9382.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000883_pilon 273542..273544 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9382.t1.CDS1	Ggra9382.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000883_pilon 273542..274828 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9382.t1.exon1	Ggra9382.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000883_pilon 273542..274828 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9382.t1.stop1	Ggra9382.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000883_pilon 274826..274828 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9382.t1	Ggra9382.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000883_pilon 273542..274828 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000883_pilon:273542..274828+
coding sequence from alignment at tig00000883_pilon:273542..274828+

mRNA sequence

>Ggra9382.t1 ID=Ggra9382.t1|Name=Ggra9382.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=429bp
MLQLNVNSNIVNGVYCAVTVLMFILLSRFLQLIASCYNLHVIYDVRKPLR
LETTRVFLLMDPGLAPRWLSHQLTILALLFTLLLMAGGFSFVGATEPVYK
TVYVRNKVVPATRGNYIDFRNHISPDGRMVSATFLLLFSADCTTSGLRFS
TTYAKTNDLQNLNDTLWSFSEDAILNSTCVNEANGFKEDILRTEELGLPT
YHNPDCYSFIVSETVRQQQLTPILSPPYNGTCPYRDLEMRCSNVFGFHCL
GSARVQDDWGGFTFFHISRHPVGFIIRSSDTRRPEREDAQVLEGVALLIP
FFSESFSLSIRDHVSSRVEENVSVRKHVRDRNVTQVKTGWMMGTFGSAMV
LLVAVIAVAMVMWVRVVWLKGRGRYNSFSANEDALACAVQALFWRTNGER
RLRIYLGMGSGVNRGRVAPLRLSARDVH*

spliced messenger RNA

>Ggra9382.t1 ID=Ggra9382.t1|Name=Ggra9382.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1287bp|location=Sequence derived from alignment at tig00000883_pilon:273542..274828+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCAACTCAATGTGAATTCGAACATTGTAAACGGTGTGTATTGCGC
AGTCACCGTGCTCATGTTCATACTGCTAAGTCGCTTCCTCCAACTTATTG
CCTCCTGCTATAACCTGCACGTAATCTATGATGTGCGAAAACCGTTGCGT
CTCGAAACAACCCGTGTCTTTCTGCTCATGGATCCCGGGTTGGCCCCTCG
CTGGCTTTCCCATCAATTGACAATTCTTGCCCTACTGTTCACTTTACTCT
TAATGGCTGGAGGGTTTTCCTTCGTTGGGGCCACTGAGCCCGTTTACAAA
ACAGTTTATGTACGAAACAAAGTGGTGCCTGCTACTCGTGGAAACTATAT
CGACTTTCGAAACCATATATCACCCGATGGGCGCATGGTTTCGGCTACAT
TTCTGTTACTGTTCTCGGCAGATTGCACGACAAGCGGCTTAAGATTCTCT
ACAACCTATGCGAAAACCAACGATTTGCAAAATCTGAACGATACTCTATG
GTCCTTTAGTGAAGATGCCATCTTGAATTCTACATGCGTCAACGAGGCAA
ATGGGTTCAAGGAAGATATCTTGCGCACAGAGGAACTTGGCCTGCCAACC
TACCACAATCCAGACTGCTACTCTTTCATAGTCTCGGAAACTGTCAGGCA
GCAACAGCTGACGCCCATACTCTCCCCACCATACAATGGTACCTGCCCCT
ATCGTGACCTGGAGATGCGTTGCTCAAACGTCTTCGGTTTCCATTGCTTG
GGATCTGCAAGAGTGCAAGACGATTGGGGCGGATTTACGTTCTTCCACAT
ATCCCGTCATCCAGTGGGTTTTATCATCAGGAGCTCGGACACGCGTCGGC
CCGAGAGAGAGGACGCACAAGTACTTGAAGGGGTTGCACTCCTTATTCCT
TTTTTCTCTGAATCTTTTTCCCTTTCTATCAGGGATCATGTTTCGTCTCG
GGTGGAAGAGAATGTGAGTGTGCGAAAACATGTGCGGGACCGAAACGTTA
CGCAAGTGAAAACTGGATGGATGATGGGTACGTTCGGGTCAGCAATGGTG
CTCTTGGTGGCGGTGATTGCCGTAGCAATGGTGATGTGGGTTCGTGTGGT
GTGGCTCAAGGGGCGAGGGAGGTACAATAGCTTCAGTGCGAATGAAGATG
CATTGGCATGTGCAGTGCAAGCGCTTTTTTGGCGTACTAACGGAGAGAGA
CGTCTTCGCATTTATTTAGGCATGGGCTCCGGTGTTAACCGGGGCCGGGT
GGCACCGCTGCGCTTGTCGGCACGCGACGTGCATTGA

protein sequence of Ggra9382.t1

>Ggra9382.t1 ID=Ggra9382.t1|Name=Ggra9382.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=429bp
MLQLNVNSNIVNGVYCAVTVLMFILLSRFLQLIASCYNLHVIYDVRKPLR
LETTRVFLLMDPGLAPRWLSHQLTILALLFTLLLMAGGFSFVGATEPVYK
TVYVRNKVVPATRGNYIDFRNHISPDGRMVSATFLLLFSADCTTSGLRFS
TTYAKTNDLQNLNDTLWSFSEDAILNSTCVNEANGFKEDILRTEELGLPT
YHNPDCYSFIVSETVRQQQLTPILSPPYNGTCPYRDLEMRCSNVFGFHCL
GSARVQDDWGGFTFFHISRHPVGFIIRSSDTRRPEREDAQVLEGVALLIP
FFSESFSLSIRDHVSSRVEENVSVRKHVRDRNVTQVKTGWMMGTFGSAMV
LLVAVIAVAMVMWVRVVWLKGRGRYNSFSANEDALACAVQALFWRTNGER
RLRIYLGMGSGVNRGRVAPLRLSARDVH*

mRNA from alignment at tig00000883_pilon:273542..274828+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9382.t1 ID=Ggra9382.t1|Name=Ggra9382.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1287bp|location=Sequence derived from alignment at tig00000883_pilon:273542..274828+ (Gracilaria gracilis GNS1m male)
ATGCTTCAACTCAATGTGAATTCGAACATTGTAAACGGTGTGTATTGCGC
AGTCACCGTGCTCATGTTCATACTGCTAAGTCGCTTCCTCCAACTTATTG
CCTCCTGCTATAACCTGCACGTAATCTATGATGTGCGAAAACCGTTGCGT
CTCGAAACAACCCGTGTCTTTCTGCTCATGGATCCCGGGTTGGCCCCTCG
CTGGCTTTCCCATCAATTGACAATTCTTGCCCTACTGTTCACTTTACTCT
TAATGGCTGGAGGGTTTTCCTTCGTTGGGGCCACTGAGCCCGTTTACAAA
ACAGTTTATGTACGAAACAAAGTGGTGCCTGCTACTCGTGGAAACTATAT
CGACTTTCGAAACCATATATCACCCGATGGGCGCATGGTTTCGGCTACAT
TTCTGTTACTGTTCTCGGCAGATTGCACGACAAGCGGCTTAAGATTCTCT
ACAACCTATGCGAAAACCAACGATTTGCAAAATCTGAACGATACTCTATG
GTCCTTTAGTGAAGATGCCATCTTGAATTCTACATGCGTCAACGAGGCAA
ATGGGTTCAAGGAAGATATCTTGCGCACAGAGGAACTTGGCCTGCCAACC
TACCACAATCCAGACTGCTACTCTTTCATAGTCTCGGAAACTGTCAGGCA
GCAACAGCTGACGCCCATACTCTCCCCACCATACAATGGTACCTGCCCCT
ATCGTGACCTGGAGATGCGTTGCTCAAACGTCTTCGGTTTCCATTGCTTG
GGATCTGCAAGAGTGCAAGACGATTGGGGCGGATTTACGTTCTTCCACAT
ATCCCGTCATCCAGTGGGTTTTATCATCAGGAGCTCGGACACGCGTCGGC
CCGAGAGAGAGGACGCACAAGTACTTGAAGGGGTTGCACTCCTTATTCCT
TTTTTCTCTGAATCTTTTTCCCTTTCTATCAGGGATCATGTTTCGTCTCG
GGTGGAAGAGAATGTGAGTGTGCGAAAACATGTGCGGGACCGAAACGTTA
CGCAAGTGAAAACTGGATGGATGATGGGTACGTTCGGGTCAGCAATGGTG
CTCTTGGTGGCGGTGATTGCCGTAGCAATGGTGATGTGGGTTCGTGTGGT
GTGGCTCAAGGGGCGAGGGAGGTACAATAGCTTCAGTGCGAATGAAGATG
CATTGGCATGTGCAGTGCAAGCGCTTTTTTGGCGTACTAACGGAGAGAGA
CGTCTTCGCATTTATTTAGGCATGGGCTCCGGTGTTAACCGGGGCCGGGT
GGCACCGCTGCGCTTGTCGGCACGCGACGTGCATTGA

Coding sequence (CDS) from alignment at tig00000883_pilon:273542..274828+

>Ggra9382.t1 ID=Ggra9382.t1|Name=Ggra9382.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1287bp|location=Sequence derived from alignment at tig00000883_pilon:273542..274828+ (Gracilaria gracilis GNS1m male)
ATGCTTCAACTCAATGTGAATTCGAACATTGTAAACGGTGTGTATTGCGC
AGTCACCGTGCTCATGTTCATACTGCTAAGTCGCTTCCTCCAACTTATTG
CCTCCTGCTATAACCTGCACGTAATCTATGATGTGCGAAAACCGTTGCGT
CTCGAAACAACCCGTGTCTTTCTGCTCATGGATCCCGGGTTGGCCCCTCG
CTGGCTTTCCCATCAATTGACAATTCTTGCCCTACTGTTCACTTTACTCT
TAATGGCTGGAGGGTTTTCCTTCGTTGGGGCCACTGAGCCCGTTTACAAA
ACAGTTTATGTACGAAACAAAGTGGTGCCTGCTACTCGTGGAAACTATAT
CGACTTTCGAAACCATATATCACCCGATGGGCGCATGGTTTCGGCTACAT
TTCTGTTACTGTTCTCGGCAGATTGCACGACAAGCGGCTTAAGATTCTCT
ACAACCTATGCGAAAACCAACGATTTGCAAAATCTGAACGATACTCTATG
GTCCTTTAGTGAAGATGCCATCTTGAATTCTACATGCGTCAACGAGGCAA
ATGGGTTCAAGGAAGATATCTTGCGCACAGAGGAACTTGGCCTGCCAACC
TACCACAATCCAGACTGCTACTCTTTCATAGTCTCGGAAACTGTCAGGCA
GCAACAGCTGACGCCCATACTCTCCCCACCATACAATGGTACCTGCCCCT
ATCGTGACCTGGAGATGCGTTGCTCAAACGTCTTCGGTTTCCATTGCTTG
GGATCTGCAAGAGTGCAAGACGATTGGGGCGGATTTACGTTCTTCCACAT
ATCCCGTCATCCAGTGGGTTTTATCATCAGGAGCTCGGACACGCGTCGGC
CCGAGAGAGAGGACGCACAAGTACTTGAAGGGGTTGCACTCCTTATTCCT
TTTTTCTCTGAATCTTTTTCCCTTTCTATCAGGGATCATGTTTCGTCTCG
GGTGGAAGAGAATGTGAGTGTGCGAAAACATGTGCGGGACCGAAACGTTA
CGCAAGTGAAAACTGGATGGATGATGGGTACGTTCGGGTCAGCAATGGTG
CTCTTGGTGGCGGTGATTGCCGTAGCAATGGTGATGTGGGTTCGTGTGGT
GTGGCTCAAGGGGCGAGGGAGGTACAATAGCTTCAGTGCGAATGAAGATG
CATTGGCATGTGCAGTGCAAGCGCTTTTTTGGCGTACTAACGGAGAGAGA
CGTCTTCGCATTTATTTAGGCATGGGCTCCGGTGTTAACCGGGGCCGGGT
GGCACCGCTGCGCTTGTCGGCACGCGACGTGCATTGA