Ggra9368.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9368.t1
Unique Name	Ggra9368.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	441

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000883_pilon	contig	tig00000883_pilon:108403..109725 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9368	Ggra9368	Gracilaria gracilis GNS1m male	gene	tig00000883_pilon 108403..109725 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9368.t1.start1	Ggra9368.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000883_pilon 108403..108405 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9368.t1.CDS1	Ggra9368.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000883_pilon 108403..109725 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9368.t1.exon1	Ggra9368.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000883_pilon 108403..109725 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9368.t1.stop1	Ggra9368.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000883_pilon 109723..109725 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9368.t1	Ggra9368.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000883_pilon 108403..109725 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000883_pilon:108403..109725+
coding sequence from alignment at tig00000883_pilon:108403..109725+

mRNA sequence

>Ggra9368.t1 ID=Ggra9368.t1|Name=Ggra9368.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=441bp
MCDDNLAVSMANIYNPVLLDNPLSISLSQLQNNIRVCQKESGYYLPIDIL
QCFTTGCKPKPNVRKPQITSEQCEHKLLVQIGYLITRIANEHNSDWGTQG
GIFLEKGRVDEDMLDLMATEFPVWFRKLPTVTVLLFFAYVFAAQLFISME
MNRQSRSFAQVLRESDEQDLWCHVVESVKQFLSERIPLSQTEISQQEQHI
ILPFLEQHVEHGVTSDLHASVQLLNDLNKIFPLSCALHSESSDNIREIWR
VECHDMDATPKLRQFSTREWKWLLFETPLRDWIHALRRLYRERNDDVHTL
ITTYEACNTVCNRKQKSGMEWHGYKEDDGCNMLRPVRLQSDMLLIWTELI
ALTKPFTTAAFAKTRSDLCAALRAHLGALVDGALLLSTVFHDCGTRFIEG
AHVIWRQSNNGTTCQNRDCASCARAMPGSPGSGVSEEGEA*

spliced messenger RNA

>Ggra9368.t1 ID=Ggra9368.t1|Name=Ggra9368.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1323bp|location=Sequence derived from alignment at tig00000883_pilon:108403..109725+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGACGATAACCTCGCCGTATCAATGGCAAACATTTATAATCCTGT
CCTTCTCGATAATCCACTGTCCATTTCGCTCTCGCAACTTCAAAACAACA
TTCGAGTGTGTCAGAAGGAGTCTGGATATTACCTACCGATAGACATTCTT
CAGTGCTTTACCACGGGTTGCAAACCGAAGCCTAACGTCAGAAAGCCGCA
AATCACAAGTGAGCAATGTGAGCACAAATTACTGGTGCAGATAGGCTACC
TCATCACGAGAATTGCTAATGAGCATAATTCCGATTGGGGCACTCAGGGA
GGCATATTTCTGGAAAAGGGTCGTGTGGATGAAGATATGCTAGATCTCAT
GGCTACCGAGTTTCCGGTTTGGTTTAGAAAGCTTCCCACCGTCACGGTGC
TGCTCTTCTTTGCTTACGTGTTTGCCGCGCAGTTGTTCATCTCCATGGAG
ATGAACAGGCAGAGCAGATCGTTTGCCCAAGTGTTGCGCGAATCCGACGA
GCAAGATTTGTGGTGTCATGTAGTGGAAAGCGTCAAGCAATTCCTCAGCG
AGAGGATTCCGTTGTCACAAACCGAAATCTCACAGCAAGAGCAACACATT
ATTTTGCCGTTCCTGGAGCAGCACGTGGAACATGGCGTAACAAGTGACTT
ACATGCTTCGGTACAATTGCTCAATGACTTGAACAAGATTTTTCCACTAT
CGTGTGCTCTGCACTCCGAGTCAAGCGACAACATTAGGGAAATATGGCGT
GTGGAATGCCACGACATGGACGCAACGCCCAAACTGAGGCAATTTAGCAC
TCGAGAGTGGAAATGGCTTTTGTTTGAAACACCGCTTCGCGATTGGATCC
ACGCATTACGTCGATTGTATCGCGAACGTAACGACGACGTTCACACGCTG
ATCACAACATACGAGGCGTGCAACACCGTTTGCAATAGGAAGCAGAAAAG
TGGCATGGAATGGCACGGCTACAAGGAGGATGATGGCTGCAACATGTTAC
GTCCGGTCCGTCTCCAAAGCGATATGCTTCTGATCTGGACTGAACTCATT
GCGCTCACGAAACCGTTCACGACAGCCGCGTTCGCCAAGACGCGCTCCGA
TCTTTGTGCAGCGCTGCGTGCGCATCTAGGGGCTCTAGTTGACGGTGCAC
TGCTACTATCCACCGTGTTCCACGACTGTGGTACGCGGTTCATTGAGGGG
GCACATGTGATTTGGCGCCAATCCAACAACGGCACCACGTGCCAGAACCG
CGACTGCGCGTCGTGCGCACGGGCCATGCCCGGATCGCCAGGCTCGGGTG
TGTCAGAGGAGGGCGAAGCATGA

protein sequence of Ggra9368.t1

>Ggra9368.t1 ID=Ggra9368.t1|Name=Ggra9368.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=441bp
MCDDNLAVSMANIYNPVLLDNPLSISLSQLQNNIRVCQKESGYYLPIDIL
QCFTTGCKPKPNVRKPQITSEQCEHKLLVQIGYLITRIANEHNSDWGTQG
GIFLEKGRVDEDMLDLMATEFPVWFRKLPTVTVLLFFAYVFAAQLFISME
MNRQSRSFAQVLRESDEQDLWCHVVESVKQFLSERIPLSQTEISQQEQHI
ILPFLEQHVEHGVTSDLHASVQLLNDLNKIFPLSCALHSESSDNIREIWR
VECHDMDATPKLRQFSTREWKWLLFETPLRDWIHALRRLYRERNDDVHTL
ITTYEACNTVCNRKQKSGMEWHGYKEDDGCNMLRPVRLQSDMLLIWTELI
ALTKPFTTAAFAKTRSDLCAALRAHLGALVDGALLLSTVFHDCGTRFIEG
AHVIWRQSNNGTTCQNRDCASCARAMPGSPGSGVSEEGEA*

mRNA from alignment at tig00000883_pilon:108403..109725+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9368.t1 ID=Ggra9368.t1|Name=Ggra9368.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1323bp|location=Sequence derived from alignment at tig00000883_pilon:108403..109725+ (Gracilaria gracilis GNS1m male)
ATGTGCGACGATAACCTCGCCGTATCAATGGCAAACATTTATAATCCTGT
CCTTCTCGATAATCCACTGTCCATTTCGCTCTCGCAACTTCAAAACAACA
TTCGAGTGTGTCAGAAGGAGTCTGGATATTACCTACCGATAGACATTCTT
CAGTGCTTTACCACGGGTTGCAAACCGAAGCCTAACGTCAGAAAGCCGCA
AATCACAAGTGAGCAATGTGAGCACAAATTACTGGTGCAGATAGGCTACC
TCATCACGAGAATTGCTAATGAGCATAATTCCGATTGGGGCACTCAGGGA
GGCATATTTCTGGAAAAGGGTCGTGTGGATGAAGATATGCTAGATCTCAT
GGCTACCGAGTTTCCGGTTTGGTTTAGAAAGCTTCCCACCGTCACGGTGC
TGCTCTTCTTTGCTTACGTGTTTGCCGCGCAGTTGTTCATCTCCATGGAG
ATGAACAGGCAGAGCAGATCGTTTGCCCAAGTGTTGCGCGAATCCGACGA
GCAAGATTTGTGGTGTCATGTAGTGGAAAGCGTCAAGCAATTCCTCAGCG
AGAGGATTCCGTTGTCACAAACCGAAATCTCACAGCAAGAGCAACACATT
ATTTTGCCGTTCCTGGAGCAGCACGTGGAACATGGCGTAACAAGTGACTT
ACATGCTTCGGTACAATTGCTCAATGACTTGAACAAGATTTTTCCACTAT
CGTGTGCTCTGCACTCCGAGTCAAGCGACAACATTAGGGAAATATGGCGT
GTGGAATGCCACGACATGGACGCAACGCCCAAACTGAGGCAATTTAGCAC
TCGAGAGTGGAAATGGCTTTTGTTTGAAACACCGCTTCGCGATTGGATCC
ACGCATTACGTCGATTGTATCGCGAACGTAACGACGACGTTCACACGCTG
ATCACAACATACGAGGCGTGCAACACCGTTTGCAATAGGAAGCAGAAAAG
TGGCATGGAATGGCACGGCTACAAGGAGGATGATGGCTGCAACATGTTAC
GTCCGGTCCGTCTCCAAAGCGATATGCTTCTGATCTGGACTGAACTCATT
GCGCTCACGAAACCGTTCACGACAGCCGCGTTCGCCAAGACGCGCTCCGA
TCTTTGTGCAGCGCTGCGTGCGCATCTAGGGGCTCTAGTTGACGGTGCAC
TGCTACTATCCACCGTGTTCCACGACTGTGGTACGCGGTTCATTGAGGGG
GCACATGTGATTTGGCGCCAATCCAACAACGGCACCACGTGCCAGAACCG
CGACTGCGCGTCGTGCGCACGGGCCATGCCCGGATCGCCAGGCTCGGGTG
TGTCAGAGGAGGGCGAAGCATGA

Coding sequence (CDS) from alignment at tig00000883_pilon:108403..109725+

>Ggra9368.t1 ID=Ggra9368.t1|Name=Ggra9368.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1323bp|location=Sequence derived from alignment at tig00000883_pilon:108403..109725+ (Gracilaria gracilis GNS1m male)
ATGTGCGACGATAACCTCGCCGTATCAATGGCAAACATTTATAATCCTGT
CCTTCTCGATAATCCACTGTCCATTTCGCTCTCGCAACTTCAAAACAACA
TTCGAGTGTGTCAGAAGGAGTCTGGATATTACCTACCGATAGACATTCTT
CAGTGCTTTACCACGGGTTGCAAACCGAAGCCTAACGTCAGAAAGCCGCA
AATCACAAGTGAGCAATGTGAGCACAAATTACTGGTGCAGATAGGCTACC
TCATCACGAGAATTGCTAATGAGCATAATTCCGATTGGGGCACTCAGGGA
GGCATATTTCTGGAAAAGGGTCGTGTGGATGAAGATATGCTAGATCTCAT
GGCTACCGAGTTTCCGGTTTGGTTTAGAAAGCTTCCCACCGTCACGGTGC
TGCTCTTCTTTGCTTACGTGTTTGCCGCGCAGTTGTTCATCTCCATGGAG
ATGAACAGGCAGAGCAGATCGTTTGCCCAAGTGTTGCGCGAATCCGACGA
GCAAGATTTGTGGTGTCATGTAGTGGAAAGCGTCAAGCAATTCCTCAGCG
AGAGGATTCCGTTGTCACAAACCGAAATCTCACAGCAAGAGCAACACATT
ATTTTGCCGTTCCTGGAGCAGCACGTGGAACATGGCGTAACAAGTGACTT
ACATGCTTCGGTACAATTGCTCAATGACTTGAACAAGATTTTTCCACTAT
CGTGTGCTCTGCACTCCGAGTCAAGCGACAACATTAGGGAAATATGGCGT
GTGGAATGCCACGACATGGACGCAACGCCCAAACTGAGGCAATTTAGCAC
TCGAGAGTGGAAATGGCTTTTGTTTGAAACACCGCTTCGCGATTGGATCC
ACGCATTACGTCGATTGTATCGCGAACGTAACGACGACGTTCACACGCTG
ATCACAACATACGAGGCGTGCAACACCGTTTGCAATAGGAAGCAGAAAAG
TGGCATGGAATGGCACGGCTACAAGGAGGATGATGGCTGCAACATGTTAC
GTCCGGTCCGTCTCCAAAGCGATATGCTTCTGATCTGGACTGAACTCATT
GCGCTCACGAAACCGTTCACGACAGCCGCGTTCGCCAAGACGCGCTCCGA
TCTTTGTGCAGCGCTGCGTGCGCATCTAGGGGCTCTAGTTGACGGTGCAC
TGCTACTATCCACCGTGTTCCACGACTGTGGTACGCGGTTCATTGAGGGG
GCACATGTGATTTGGCGCCAATCCAACAACGGCACCACGTGCCAGAACCG
CGACTGCGCGTCGTGCGCACGGGCCATGCCCGGATCGCCAGGCTCGGGTG
TGTCAGAGGAGGGCGAAGCATGA