Ggra9346.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9346.t1
Unique NameGgra9346.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length235
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:42655..43359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708635.1
PFAMsHMG_box,SNF5
Max annot lvl2759|Eukaryota
KEGG koko:K09530,ko:K11648,ko:K12662
KEGG Pathwayko03040,ko04141,ko04714,ko05225,map03040,map04141,map04714,map05225
KEGG ModuleM00354
GOsGO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006333,GO:0006337,GO:0006338,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016043,GO:0019219,GO:0019222,GO:0022411,GO:0031323,GO:0031326,GO:0031498,GO:0032984,GO:0032986,GO:0033554,GO:0034641,GO:0034728,GO:0043044,GO:0043170,GO:0043933,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051276,GO:0051716,GO:0060255,GO:0065007,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:1901360,GO:1903506,GO:2000112,GO:2001141
Evalue3.79e-40
EggNOG OGsKOG1649@1|root,KOG1649@2759|Eukaryota
Descriptionchromatin disassembly
COG categoryK
BRITEko00000,ko00001,ko00002,ko01009,ko03021,ko03036,ko03041,ko03110,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9346Ggra9346Gracilaria gracilis GNS1m malegenetig00000883_pilon 42655..43359 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9346.t1.start1Ggra9346.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 42655..42657 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9346.t1.CDS1Ggra9346.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 42655..43359 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9346.t1.exon1Ggra9346.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 42655..43359 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9346.t1.stop1Ggra9346.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 43357..43359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9346.t1Ggra9346.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 42655..43359 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9346.t1 ID=Ggra9346.t1|Name=Ggra9346.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=235bp
MAPASTNPRKRERAALRGPSDALIPIRLDLTFDNHRIQETLTWNLLESQI
TPLTFATILVDDLNLPESARDTISEAINEQIASYVPPKQPQNECRHVVRL
DIRIGRIVIRDQFEWDLSAHQNSPEAFAEGLCADLGLNSEHVPPVAHAIR
EQLLELAEFQDKRQKCAVLHEKDVVRSGGVQTWEPEVECLSVEEQERLER
KERREARLMRRNRGKAEVYGRPKSRRRSTSSRRR*
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spliced messenger RNA

>Ggra9346.t1 ID=Ggra9346.t1|Name=Ggra9346.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=705bp|location=Sequence derived from alignment at tig00000883_pilon:42655..43359+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACCAGCCAGCACAAACCCGAGAAAGCGAGAACGTGCCGCTCTCCG
CGGGCCGTCCGACGCTCTAATTCCCATCCGTCTCGACCTGACATTCGACA
ACCATCGCATTCAAGAAACCTTAACCTGGAATTTGCTCGAATCACAAATC
ACGCCGCTTACGTTCGCAACCATACTAGTCGACGATTTGAACCTGCCCGA
GTCGGCGCGCGACACCATTTCAGAAGCGATAAATGAGCAAATAGCGTCGT
ACGTCCCCCCAAAACAGCCCCAGAACGAATGTAGACATGTCGTACGTCTT
GATATTCGTATTGGAAGAATTGTCATCAGAGATCAATTTGAGTGGGATCT
CTCGGCGCATCAAAACAGCCCCGAAGCTTTTGCAGAGGGGTTGTGTGCTG
ATCTTGGCTTGAATAGTGAACATGTGCCACCAGTTGCGCATGCGATTCGG
GAACAATTGTTGGAACTGGCCGAATTTCAGGACAAACGACAAAAATGTGC
CGTGCTTCACGAGAAGGATGTGGTTCGAAGTGGGGGCGTTCAAACATGGG
AACCGGAAGTTGAATGTCTGTCCGTGGAAGAACAAGAACGACTGGAGAGA
AAGGAACGAAGGGAGGCTCGATTGATGAGACGAAATCGTGGAAAAGCTGA
AGTTTATGGTAGACCTAAAAGTCGAAGAAGATCTACATCTTCTAGACGGC
GATAG
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protein sequence of Ggra9346.t1

>Ggra9346.t1 ID=Ggra9346.t1|Name=Ggra9346.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=235bp
MAPASTNPRKRERAALRGPSDALIPIRLDLTFDNHRIQETLTWNLLESQI
TPLTFATILVDDLNLPESARDTISEAINEQIASYVPPKQPQNECRHVVRL
DIRIGRIVIRDQFEWDLSAHQNSPEAFAEGLCADLGLNSEHVPPVAHAIR
EQLLELAEFQDKRQKCAVLHEKDVVRSGGVQTWEPEVECLSVEEQERLER
KERREARLMRRNRGKAEVYGRPKSRRRSTSSRRR*
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mRNA from alignment at tig00000883_pilon:42655..43359+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9346.t1 ID=Ggra9346.t1|Name=Ggra9346.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=705bp|location=Sequence derived from alignment at tig00000883_pilon:42655..43359+ (Gracilaria gracilis GNS1m male)
ATGGCACCAGCCAGCACAAACCCGAGAAAGCGAGAACGTGCCGCTCTCCG
CGGGCCGTCCGACGCTCTAATTCCCATCCGTCTCGACCTGACATTCGACA
ACCATCGCATTCAAGAAACCTTAACCTGGAATTTGCTCGAATCACAAATC
ACGCCGCTTACGTTCGCAACCATACTAGTCGACGATTTGAACCTGCCCGA
GTCGGCGCGCGACACCATTTCAGAAGCGATAAATGAGCAAATAGCGTCGT
ACGTCCCCCCAAAACAGCCCCAGAACGAATGTAGACATGTCGTACGTCTT
GATATTCGTATTGGAAGAATTGTCATCAGAGATCAATTTGAGTGGGATCT
CTCGGCGCATCAAAACAGCCCCGAAGCTTTTGCAGAGGGGTTGTGTGCTG
ATCTTGGCTTGAATAGTGAACATGTGCCACCAGTTGCGCATGCGATTCGG
GAACAATTGTTGGAACTGGCCGAATTTCAGGACAAACGACAAAAATGTGC
CGTGCTTCACGAGAAGGATGTGGTTCGAAGTGGGGGCGTTCAAACATGGG
AACCGGAAGTTGAATGTCTGTCCGTGGAAGAACAAGAACGACTGGAGAGA
AAGGAACGAAGGGAGGCTCGATTGATGAGACGAAATCGTGGAAAAGCTGA
AGTTTATGGTAGACCTAAAAGTCGAAGAAGATCTACATCTTCTAGACGGC
GATAG
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Coding sequence (CDS) from alignment at tig00000883_pilon:42655..43359+

>Ggra9346.t1 ID=Ggra9346.t1|Name=Ggra9346.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=705bp|location=Sequence derived from alignment at tig00000883_pilon:42655..43359+ (Gracilaria gracilis GNS1m male)
ATGGCACCAGCCAGCACAAACCCGAGAAAGCGAGAACGTGCCGCTCTCCG
CGGGCCGTCCGACGCTCTAATTCCCATCCGTCTCGACCTGACATTCGACA
ACCATCGCATTCAAGAAACCTTAACCTGGAATTTGCTCGAATCACAAATC
ACGCCGCTTACGTTCGCAACCATACTAGTCGACGATTTGAACCTGCCCGA
GTCGGCGCGCGACACCATTTCAGAAGCGATAAATGAGCAAATAGCGTCGT
ACGTCCCCCCAAAACAGCCCCAGAACGAATGTAGACATGTCGTACGTCTT
GATATTCGTATTGGAAGAATTGTCATCAGAGATCAATTTGAGTGGGATCT
CTCGGCGCATCAAAACAGCCCCGAAGCTTTTGCAGAGGGGTTGTGTGCTG
ATCTTGGCTTGAATAGTGAACATGTGCCACCAGTTGCGCATGCGATTCGG
GAACAATTGTTGGAACTGGCCGAATTTCAGGACAAACGACAAAAATGTGC
CGTGCTTCACGAGAAGGATGTGGTTCGAAGTGGGGGCGTTCAAACATGGG
AACCGGAAGTTGAATGTCTGTCCGTGGAAGAACAAGAACGACTGGAGAGA
AAGGAACGAAGGGAGGCTCGATTGATGAGACGAAATCGTGGAAAAGCTGA
AGTTTATGGTAGACCTAAAAGTCGAAGAAGATCTACATCTTCTAGACGGC
GATAG
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