Ggra9346.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9346.t1
Unique NameGgra9346.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length235
Homology
BLAST of Ggra9346.t1 vs. uniprot
Match: A0A2V3IV60 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IV60_9FLOR)

HSP 1 Score: 353 bits (906), Expect = 2.210e-121
Identity = 183/235 (77.87%), Postives = 204/235 (86.81%), Query Frame = 0
Query:    1 MAPASTNPRKRERAALRGPS-DALIPIRLDLTFDNHRIQETLTWNLLESQITPLTFATILVDDLNLPESARDTISEAINEQIASYVPPKQPQNECRHVVRLDIRIGRIVIRDQFEWDLSAHQNSPEAFAEGLCADLGLNSEHVPPVAHAIREQLLELAEFQDKRQKCAVLHEKDVVRSGGVQTWEPEVECLSVEEQERLERKERREARLMRRNRGKAEVYGRPKSRRRSTSSRRR 234
            M   + NP+KRER  +   S DALIPIRLDLTFDN R+QETLTWNLLE+QITPLTFA+IL  DL+LP+SARD+I+E I EQI +YVP + PQ ECRHVVRLD+R+GRIVIRDQFEWDLS+ +NSPEAFAE LCADLGLN+EHVP VAHAIREQLLELAEFQDKRQ+C VLHE DV+R  GV+ WEP VECL+VEEQERLERKERREARLMRRNRGKAEVY  PKSRRRS SSRRR
Sbjct:    1 MVSNAANPKKRERPTVASASSDALIPIRLDLTFDNRRVQETLTWNLLETQITPLTFASILAADLSLPDSARDSIAETIKEQIEAYVPLRLPQKECRHVVRLDLRVGRIVIRDQFEWDLSSSENSPEAFAEALCADLGLNTEHVPHVAHAIREQLLELAEFQDKRQRCPVLHENDVIRIQGVEAWEPGVECLTVEEQERLERKERREARLMRRNRGKAEVYAFPKSRRRSISSRRR 235          
BLAST of Ggra9346.t1 vs. uniprot
Match: R7QTW3 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QTW3_CHOCR)

HSP 1 Score: 257 bits (656), Expect = 3.900e-83
Identity = 140/232 (60.34%), Postives = 169/232 (72.84%), Query Frame = 0
Query:   10 KRERAALRGP--------SDALIPIRLDLTFDNHRIQETLTWNLLESQITPLTFATILVDDLNLPESARDTISEAINEQIASYVPP-KQPQNECRHVVRLDIRIGRIVIRDQFEWDLSAHQNSPEAFAEGLCADLGLNSEHVPPVAHAIREQLLELAEFQDKRQKCAVLHEKDVVRS-GGVQTWEPEVECLSVEEQERLERKERREARLMRRNRGKAEVYGRPKSRRRSTSS 231
            KR R ++ G         ++ L+PIRLDL  D  R+QE+ TWNL E  +TP +FA  L  DL L +S RD I++A+ EQI+++VPP    + ECRHVV LD+RIGRIVIRDQFEWDL   QNSPEAFAE LCADLGLN EHV  VAHAIREQL+EL EF+DKRQ+C+VL E DVVR    +  WEP V CL++EEQER+ERKE+REARL RRNRGKAE   R   RRRS+ +
Sbjct:   12 KRSRTSVEGEDVRNAGPQTEPLVPIRLDLNLDGRRVQESFTWNLREKHMTPKSFAAQLAYDLGLADSGRDEIADAMQEQISAFVPPPSSTKGECRHVVHLDLRIGRIVIRDQFEWDLHEPQNSPEAFAERLCADLGLNFEHVAAVAHAIREQLVELGEFRDKRQRCSVLTEGDVVRPVEELIRWEPAVTCLTLEEQERIERKEKREARLQRRNRGKAETNWRTPGRRRSSDN 243          
BLAST of Ggra9346.t1 vs. uniprot
Match: M2X6H3 (SWI/SNF-related matrix-associated actin-dependent regulator ofchromatin subfamily B member 1 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X6H3_GALSU)

HSP 1 Score: 149 bits (375), Expect = 7.870e-40
Identity = 82/168 (48.81%), Postives = 110/168 (65.48%), Query Frame = 0
Query:   55 FATILVDDLNLPESARDTISEAINEQIASYVPPKQPQNEC---RHVVRLDIRIGRIVIRDQFEWDLSAHQNSPEAFAEGLCADLGLNSEHVPPVAHAIREQLLELAEFQDKRQKCAVLHEKDVVRSGG-VQTWEPEVECLSVEEQERLERKERREARLMRRNRGKAEV 218
            FA  +V D +LP SA + I  +I EQ+A Y+P + P+ E    RH+++LDIRIG++V+RDQFEWD S   NSPE FAE LC DLGL  E VP VAHAIREQL ELAE    R     +    + R    +  W+P VE L+ ++ E+LER+E R+AR+ RRN+G+  +
Sbjct:    4 FARTVVVDTSLPHSAEELIVSSIREQVAGYIPYRSPEEEIGERRHILKLDIRIGKVVLRDQFEWDRSNADNSPEEFAETLCKDLGLTREFVPAVAHAIREQLQELAEHPYTRCLQGSVPASGIYRKPETLSQWQPVVEILTDDQLEKLERRETRDARVARRNKGRESI 171          
BLAST of Ggra9346.t1 vs. uniprot
Match: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A-like isoform X1 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FC527 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A-like isoform X1 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FC527)

HSP 1 Score: 134 bits (336), Expect = 1.580e-33
Identity = 88/211 (41.71%), Postives = 121/211 (57.35%), Query Frame = 0
Query:   21 DALIPIRLDLTFDNHRIQETLTWNLLESQITPLTFATILVDDLNLPESAR-DTISEAINEQIASY-VPPK---QPQNECRHVVRLDIRIGRIVIRDQFEWDLSAHQNSPEAFAEGLCADLGLNSEHVPPVAHAIREQLLELAEFQDKRQKCAVLHEKDV------VRSG-GVQTWEPEVECLSVEEQERLERKERREARLMRRNRGKAEVY 219
            + L+PIRLD+  +  ++++T TWN  E+QI P TFA +L DDL+LP S+    I++AI +Q+  Y V P+     Q + R +++L+I +G I + DQFEWDLS  QNSPE FA  LC+DLGL  E V  VA++IR QL          QK     E  +      VRSG  +  W P +E L+  E E+  R + R  R MRR    A VY
Sbjct:  197 EVLVPIRLDVDIEGQKLRDTFTWNKNETQIAPETFAEVLCDDLDLPPSSFVPAIAQAIRQQVKQYDVEPEIALTEQKDQRIIIKLNIHVGNISLVDQFEWDLSEPQNSPEQFALSLCSDLGLGGEFVTAVAYSIRGQL-------SWHQKTYAFSEAPLPKVDNPVRSGPDIDNWGPYLETLTDAEMEKKLRDQDRNTRRMRRLANTAPVY 400          
BLAST of Ggra9346.t1 vs. uniprot
Match: M1VIN6 (Similar to SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1VIN6_CYAM1)

HSP 1 Score: 129 bits (324), Expect = 3.200e-32
Identity = 80/205 (39.02%), Postives = 120/205 (58.54%), Query Frame = 0
Query:   21 DALIPIRLDLTFDNHRIQETLTWNLLESQITPLTFATILVDDLNLPESARDTISEAINEQIASYVPPKQP----QNECRHVVRLDIRIGRIVIRDQFEWDLSAHQNSPEAFAEGLCADLGLNSEHVPPVAHAIREQLLELAEFQDKRQKCAV--LHEKDVVRSGGVQTWE---PEVECLSVEEQERLERKERREARLMRRNRGKA 216
            + LIPIR+D+ +++ R+ +   WN  E ++TP TFA  L+ DL  P    + ++ AI EQI  Y P +      ++E R +  LD+RIG I ++D FEWD  + ++ PE F+  LC +LGL +E    +AHAIREQL ++       QK  +  +H +  +R G  + WE   P V  LS EE E +ER+E R AR MRR++ K+
Sbjct:   27 EPLIPIRIDVQWNDARVVDAFLWNQYEERLTPETFAPHLLRDLQQPMELANGVASAIREQIEQYSPFEHELFADRSELRLLFTLDVRIGNIQLQDTFEWDALSFESDPEQFSRMLCRELGLGTEFSTAIAHAIREQLQDVWAGVAYSQKSILESVHPRITIRDG--EDWELPGPAVRVLSKEELEEVERREDRSARAMRRSQRKS 229          
BLAST of Ggra9346.t1 vs. uniprot
Match: A0A4Z2BL62 (Uncharacterized protein n=1 Tax=Takifugu bimaculatus TaxID=433685 RepID=A0A4Z2BL62_9TELE)

HSP 1 Score: 126 bits (316), Expect = 1.390e-31
Identity = 76/194 (39.18%), Postives = 112/194 (57.73%), Query Frame = 0
Query:   21 DALIPIRLDLTFDNHRIQETLTWNLLESQITPLTFATILVDDLNL-PESARDTISEAINEQIASYVPPK--QPQNECRHVVRLDIRIGRIVIRDQFEWDLSAHQNSPEAFAEGLCADLGLNSEHVPPVAHAIREQLLELAEFQDKRQKCAVLHEKDVVRSGGVQTWEPEVECLSVEEQERLERKERREARLMRR 211
            +AL+PIRLD+  D  ++++T TWN+ E  +TP  FA IL DDL+L P +    I+ AI +QI SY      + Q + R +++L+I +G I + DQFEWD+S  +NSPE+FA  LC++LGL  E V  +A++IR QL          +      E  +  +G    W P +E L+  E E+  R + R  R MRR
Sbjct:   84 EALVPIRLDMEIDGQKLRDTFTWNMNEKLMTPEMFAEILCDDLDLSPLAFVPAIASAIRQQIESYPTDTILEEQTDQRVIIKLNIHVGNISLMDQFEWDMSERENSPESFALKLCSELGLGGEFVTTIAYSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRR 277          
BLAST of Ggra9346.t1 vs. uniprot
Match: Q9PU60 (SWI/SNF-related matrix associated protein (Fragment) n=2 Tax=Gnathostomata TaxID=7776 RepID=Q9PU60_DANRE)

HSP 1 Score: 122 bits (305), Expect = 1.990e-30
Identity = 76/199 (38.19%), Postives = 113/199 (56.78%), Query Frame = 0
Query:   20 SDALIPIRLDLTFDNHRIQETLTWNLLESQITPLTFATILVDDLNL-PESARDTISEAINEQIASYVPPK--QPQNECRHVVRLDIRIGRIVIRDQFEWDLSAHQNSPEAFAEGLCADLGLNSEHVPPVAHAIREQLL----ELAEFQDKRQKCAVLHEKDVVRSGGVQTWEPEVECLSVEEQERLERKERREARLMRR 211
            ++ L+PIRLD+  D  ++++  TWN+ E  +TP  FA IL DDL+L P +    I+ AI +QI SY      + Q + R +++L+I +G I + DQFEWD+S  +NSPE+FA  LC++LGL  E V  +A++IR QL       A   D  +      E  +  +G    W P +E L+  E E+  R + R  R MRR
Sbjct:   33 AEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLTFVPAIASAIRQQIESYPTDSILEEQTDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPESFALKLCSELGLGGEFVTTIAYSIRGQLSWHQRTYAFRSDFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRR 231          
BLAST of Ggra9346.t1 vs. uniprot
Match: A0A669DEZ4 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 n=12 Tax=Euteleostomi TaxID=117571 RepID=A0A669DEZ4_ORENI)

HSP 1 Score: 124 bits (312), Expect = 2.780e-30
Identity = 75/194 (38.66%), Postives = 112/194 (57.73%), Query Frame = 0
Query:   21 DALIPIRLDLTFDNHRIQETLTWNLLESQITPLTFATILVDDLNL-PESARDTISEAINEQIASYVPPK--QPQNECRHVVRLDIRIGRIVIRDQFEWDLSAHQNSPEAFAEGLCADLGLNSEHVPPVAHAIREQLLELAEFQDKRQKCAVLHEKDVVRSGGVQTWEPEVECLSVEEQERLERKERREARLMRR 211
            +AL+P+RLD+  D  ++++T TWN+ E  +TP  FA IL DDL+L P +    I+ AI +QI SY      + Q + R +++L+I +G I + DQFEWD+S  +NSPE+FA  LC++LGL  E V  +A++IR QL          +      E  +  +G    W P +E L+  E E+  R + R  R MRR
Sbjct:  167 EALVPVRLDMEIDGQKLRDTFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDSLLEDQADQRVIIKLNIHVGNISLVDQFEWDMSERENSPESFALKLCSELGLGGEFVTTIAYSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRR 360          
BLAST of Ggra9346.t1 vs. uniprot
Match: A0A3Q3G1F0 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 n=3 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3G1F0_9LABR)

HSP 1 Score: 124 bits (311), Expect = 3.880e-30
Identity = 75/194 (38.66%), Postives = 112/194 (57.73%), Query Frame = 0
Query:   21 DALIPIRLDLTFDNHRIQETLTWNLLESQITPLTFATILVDDLNL-PESARDTISEAINEQIASYVPPK--QPQNECRHVVRLDIRIGRIVIRDQFEWDLSAHQNSPEAFAEGLCADLGLNSEHVPPVAHAIREQLLELAEFQDKRQKCAVLHEKDVVRSGGVQTWEPEVECLSVEEQERLERKERREARLMRR 211
            ++L+PIRLD+  D  ++++  TWN+ E  +TP  FA IL DDL+L P +    I+ AI +QI SY      + Q + R +++L+I +G I + DQFEWD+S  +NSPE+FA  LC++LGL  E V  +A++IR QL          +      E  +  +G   TW P +E L+  E E+  R + R  R MRR
Sbjct:  167 ESLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDSIMEEQADQRVIIKLNIHVGNISLVDQFEWDMSERENSPESFALKLCSELGLGGEFVTTIAYSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADTWCPLLETLTDAEMEKKIRDQDRNTRRMRR 360          
BLAST of Ggra9346.t1 vs. uniprot
Match: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A-like isoform X1 n=4 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B8876A0 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A-like isoform X1 n=4 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B8876A0)

HSP 1 Score: 124 bits (312), Expect = 4.120e-30
Identity = 79/208 (37.98%), Postives = 118/208 (56.73%), Query Frame = 0
Query:    6 TNPRKRERAALRGPSDALIPIRLDLTFDNHRIQETLTWNLLESQITPLTFATILVDDLNL-PESARDTISEAINEQIASYVPPKQPQN-ECRHVVRLDIRIGRIVIRDQFEWDLSAHQNSPEAFAEGLCADLGLNSEHVPPVAHAIREQLLELAEFQDKRQKCAVLHEKDVVRSGGVQTWEPEVECLSVEEQERLERKERREARLMRR 211
            TNP +    A +  S+ L+PIRLD+ FD  ++++  TWN  E+ ITP  FA +L DDL+L P +    IS+AI +QI +Y     P++ + R +++L+I +G I + DQFEWD+S  +NSPE F+  LCA+LGL  E V  +A++IR QL          +    + E  +        W P +E L+  E E+  R + R  R MRR
Sbjct:  167 TNPAQIHENAAQ--SECLVPIRLDMEFDGQKLRDCFTWNKNETLITPEQFAEVLCDDLDLNPLNFVSAISQAIRQQIEAYPSDVTPESLDQRIILKLNIHVGNISLVDQFEWDMSDSENSPEQFSTKLCAELGLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPIVEIAIRNQNEADQWCPFLETLTDAEMEKKIRDQDRNTRRMRR 372          
The following BLAST results are available for this feature:
BLAST of Ggra9346.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IV602.210e-12177.87SWI/SNF-related matrix-associated actin-dependent ... [more]
R7QTW33.900e-8360.34Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
M2X6H37.870e-4048.81SWI/SNF-related matrix-associated actin-dependent ... [more]
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A-like isoform X1 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FC5271.580e-3341.71SWI/SNF-related matrix-associated actin-dependent ... [more]
M1VIN63.200e-3239.02Similar to SWI/SNF related, matrix associated, act... [more]
A0A4Z2BL621.390e-3139.18Uncharacterized protein n=1 Tax=Takifugu bimaculat... [more]
Q9PU601.990e-3038.19SWI/SNF-related matrix associated protein (Fragmen... [more]
A0A669DEZ42.780e-3038.66SWI/SNF-related matrix-associated actin-dependent ... [more]
A0A3Q3G1F03.880e-3038.66SWI/SNF-related matrix-associated actin-dependent ... [more]
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A-like isoform X1 n=4 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B8876A04.120e-3037.98SWI/SNF-related matrix-associated actin-dependent ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 191..212
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 205..224
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 205..234
NoneNo IPR availablePANTHERPTHR10019SNF5coord: 17..215
NoneNo IPR availablePANTHERPTHR10019:SF5SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY B MEMBER 1coord: 17..215
IPR006939SNF5/SMARCB1/INI1PFAMPF04855SNF5coord: 21..84
e-value: 1.6E-17
score: 64.1
coord: 89..207
e-value: 7.0E-28
score: 98.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:42655..43359 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9346.t1Ggra9346.t1Gracilaria gracilis GNS1m malemRNAtig00000883_pilon 42655..43359 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9346.t1 ID=Ggra9346.t1|Name=Ggra9346.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=235bp
MAPASTNPRKRERAALRGPSDALIPIRLDLTFDNHRIQETLTWNLLESQI
TPLTFATILVDDLNLPESARDTISEAINEQIASYVPPKQPQNECRHVVRL
DIRIGRIVIRDQFEWDLSAHQNSPEAFAEGLCADLGLNSEHVPPVAHAIR
EQLLELAEFQDKRQKCAVLHEKDVVRSGGVQTWEPEVECLSVEEQERLER
KERREARLMRRNRGKAEVYGRPKSRRRSTSSRRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006939SNF5