Ggra9371.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9371.t1
Unique NameGgra9371.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length262
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:113621..114406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog382464.ABSI01000010_gene3861
Preferred nameyuaD
PFAMsMOSC
Max annot lvl2|Bacteria
Evalue1.39e-30
EggNOG OGsCOG2258@1|root,COG2258@2|Bacteria
DescriptionMOSC domain
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9371Ggra9371Gracilaria gracilis GNS1m malegenetig00000883_pilon 113621..114406 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9371.t1.start1Ggra9371.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 113621..113623 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9371.t1.CDS1Ggra9371.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 113621..114406 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9371.t1.exon1Ggra9371.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 113621..114406 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9371.t1.stop1Ggra9371.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 114404..114406 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9371.t1Ggra9371.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 113621..114406 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9371.t1 ID=Ggra9371.t1|Name=Ggra9371.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=262bp
MMRSQRLRTARKQLQTDAQRQPAALARTHRCECSTSSSTPQLRRSTMAAT
VDISAPSAALITPKRSKECGTLVSIVPFVPFATLSEKLLSESRAKSPLDN
GRVSLIVERPDLNERNVVRTTTLTVQGGMSNSGWVEYPKDGKNNQICVMS
EAAIRAITESDNELDWAAAGDNLFFDLELAKDNLAVGDRVQLGEHVVLEV
TPKAHNGCSKFAARYGADALKLVNAPLGKQRRLRGIYFFVVQEGQVNVGD
PIKKIAKPPHS*
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spliced messenger RNA

>Ggra9371.t1 ID=Ggra9371.t1|Name=Ggra9371.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=786bp|location=Sequence derived from alignment at tig00000883_pilon:113621..114406+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCGCTCGCAGAGATTGAGGACCGCTCGCAAGCAGCTGCAAACAGA
TGCACAGCGCCAGCCAGCAGCTCTGGCTCGCACTCACCGCTGCGAGTGTT
CCACATCGTCGTCAACACCTCAACTGCGACGCAGCACCATGGCAGCCACA
GTGGACATCTCCGCGCCATCCGCTGCGCTCATAACGCCCAAGCGCAGCAA
GGAATGCGGCACGCTGGTATCCATCGTGCCGTTCGTGCCGTTCGCCACGC
TGTCCGAGAAGCTCCTCTCGGAGTCGCGCGCAAAGTCACCGCTGGACAAC
GGGCGCGTGTCGCTCATCGTAGAGCGCCCCGACCTGAATGAGCGCAACGT
CGTGCGCACCACGACGCTGACGGTGCAAGGCGGCATGTCCAACTCGGGCT
GGGTGGAGTACCCGAAGGACGGCAAAAACAACCAGATATGCGTCATGTCC
GAGGCGGCCATCCGCGCCATCACCGAAAGCGACAACGAGCTGGACTGGGC
GGCGGCCGGCGATAATCTGTTCTTCGACCTCGAGCTGGCGAAGGACAATC
TGGCCGTGGGCGACCGCGTGCAGCTGGGTGAACACGTCGTGCTGGAGGTG
ACCCCAAAGGCGCACAACGGCTGTAGCAAGTTCGCCGCGCGCTACGGAGC
AGACGCGCTCAAGCTGGTGAACGCGCCGCTGGGCAAGCAGCGCCGCCTGC
GCGGCATCTACTTCTTCGTCGTGCAGGAGGGGCAAGTAAACGTGGGCGAC
CCCATCAAGAAGATAGCCAAGCCGCCCCACAGTTGA
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protein sequence of Ggra9371.t1

>Ggra9371.t1 ID=Ggra9371.t1|Name=Ggra9371.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=262bp
MMRSQRLRTARKQLQTDAQRQPAALARTHRCECSTSSSTPQLRRSTMAAT
VDISAPSAALITPKRSKECGTLVSIVPFVPFATLSEKLLSESRAKSPLDN
GRVSLIVERPDLNERNVVRTTTLTVQGGMSNSGWVEYPKDGKNNQICVMS
EAAIRAITESDNELDWAAAGDNLFFDLELAKDNLAVGDRVQLGEHVVLEV
TPKAHNGCSKFAARYGADALKLVNAPLGKQRRLRGIYFFVVQEGQVNVGD
PIKKIAKPPHS*
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mRNA from alignment at tig00000883_pilon:113621..114406+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9371.t1 ID=Ggra9371.t1|Name=Ggra9371.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=786bp|location=Sequence derived from alignment at tig00000883_pilon:113621..114406+ (Gracilaria gracilis GNS1m male)
ATGATGCGCTCGCAGAGATTGAGGACCGCTCGCAAGCAGCTGCAAACAGA
TGCACAGCGCCAGCCAGCAGCTCTGGCTCGCACTCACCGCTGCGAGTGTT
CCACATCGTCGTCAACACCTCAACTGCGACGCAGCACCATGGCAGCCACA
GTGGACATCTCCGCGCCATCCGCTGCGCTCATAACGCCCAAGCGCAGCAA
GGAATGCGGCACGCTGGTATCCATCGTGCCGTTCGTGCCGTTCGCCACGC
TGTCCGAGAAGCTCCTCTCGGAGTCGCGCGCAAAGTCACCGCTGGACAAC
GGGCGCGTGTCGCTCATCGTAGAGCGCCCCGACCTGAATGAGCGCAACGT
CGTGCGCACCACGACGCTGACGGTGCAAGGCGGCATGTCCAACTCGGGCT
GGGTGGAGTACCCGAAGGACGGCAAAAACAACCAGATATGCGTCATGTCC
GAGGCGGCCATCCGCGCCATCACCGAAAGCGACAACGAGCTGGACTGGGC
GGCGGCCGGCGATAATCTGTTCTTCGACCTCGAGCTGGCGAAGGACAATC
TGGCCGTGGGCGACCGCGTGCAGCTGGGTGAACACGTCGTGCTGGAGGTG
ACCCCAAAGGCGCACAACGGCTGTAGCAAGTTCGCCGCGCGCTACGGAGC
AGACGCGCTCAAGCTGGTGAACGCGCCGCTGGGCAAGCAGCGCCGCCTGC
GCGGCATCTACTTCTTCGTCGTGCAGGAGGGGCAAGTAAACGTGGGCGAC
CCCATCAAGAAGATAGCCAAGCCGCCCCACAGTTGA
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Coding sequence (CDS) from alignment at tig00000883_pilon:113621..114406+

>Ggra9371.t1 ID=Ggra9371.t1|Name=Ggra9371.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=786bp|location=Sequence derived from alignment at tig00000883_pilon:113621..114406+ (Gracilaria gracilis GNS1m male)
ATGATGCGCTCGCAGAGATTGAGGACCGCTCGCAAGCAGCTGCAAACAGA
TGCACAGCGCCAGCCAGCAGCTCTGGCTCGCACTCACCGCTGCGAGTGTT
CCACATCGTCGTCAACACCTCAACTGCGACGCAGCACCATGGCAGCCACA
GTGGACATCTCCGCGCCATCCGCTGCGCTCATAACGCCCAAGCGCAGCAA
GGAATGCGGCACGCTGGTATCCATCGTGCCGTTCGTGCCGTTCGCCACGC
TGTCCGAGAAGCTCCTCTCGGAGTCGCGCGCAAAGTCACCGCTGGACAAC
GGGCGCGTGTCGCTCATCGTAGAGCGCCCCGACCTGAATGAGCGCAACGT
CGTGCGCACCACGACGCTGACGGTGCAAGGCGGCATGTCCAACTCGGGCT
GGGTGGAGTACCCGAAGGACGGCAAAAACAACCAGATATGCGTCATGTCC
GAGGCGGCCATCCGCGCCATCACCGAAAGCGACAACGAGCTGGACTGGGC
GGCGGCCGGCGATAATCTGTTCTTCGACCTCGAGCTGGCGAAGGACAATC
TGGCCGTGGGCGACCGCGTGCAGCTGGGTGAACACGTCGTGCTGGAGGTG
ACCCCAAAGGCGCACAACGGCTGTAGCAAGTTCGCCGCGCGCTACGGAGC
AGACGCGCTCAAGCTGGTGAACGCGCCGCTGGGCAAGCAGCGCCGCCTGC
GCGGCATCTACTTCTTCGTCGTGCAGGAGGGGCAAGTAAACGTGGGCGAC
CCCATCAAGAAGATAGCCAAGCCGCCCCACAGTTGA
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