Ggra9375.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9375.t1
Unique NameGgra9375.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length640
Homology
BLAST of Ggra9375.t1 vs. uniprot
Match: A0A2V3IVD2 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVD2_9FLOR)

HSP 1 Score: 290 bits (743), Expect = 2.530e-87
Identity = 268/452 (59.29%), Postives = 304/452 (67.26%), Query Frame = 0
Query:  185 PLQPLPLQLDLLNYRARRQMWRAPQRAEALFQRAVAINAADGRAWLGLARLRVAARKHDAARATFRAGVRASPRNAHLLQAWGVFEQRQRSMARAHALLRAAVRVQPTHAPAWVALSLWYQRVARDVHRARGCVRRATKVAPESYYAWTVWAQLESDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAPRQMMALLEFRDGRAEQARELFRSALHADRAHAPSWHAWACVERLCGDAPRARTLFQHAVWAAPHSPHAVRSXXXXXXXXXXXXXXXXXXXXXXXXXLIDAHSVPILTGLARLEARCGHMHRARELLETSVRLQPALGSTWKLYEDLELAHGSLRRARLVYRRCELYMKQLDQRVVVSDPLPGDFRAGGMWIDALQLDCADSAF 636
            P QPLPLQLDLLNY ARR    AP RA ALFQRA+ IN+ADGRAWLGLARL++AA K DAAR TFRA +RA P+NAHLLQAWGV EQRQ +                 HAP+WVAL+LWYQR A D+  AR C++RAT+  P +YYAW VWAQLES                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                           Q A+WA P S HAVR XXXXXXXXXXXXXXXXXXX       ID++SVPIL G+A+LEA  G M RAR+LLE S+RL+P L STWKLYEDLELA+GS+ RA+LVY RC ++M+Q+ +R+VVS+ LPGDF+AGGMWIDAL+L  ++SAF
Sbjct:    9 PPQPLPLQLDLLNYHARRASRHAPDRAAALFQRALCINSADGRAWLGLARLQIAAGKPDAARETFRAAMRACPKNAHLLQAWGVLEQRQHAXXXXXXXXXXXXXXXXXHAPSWVALALWYQRHAHDLTTARECLQRATEAQPHNYYAWQVWAQLESSVGNISKARHFFAQSLNVNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEAIWATPQSEHAVRXXXXXXXXXXXXXXXXXXXXYFAHAMEIDSNSVPILNGMAKLEAMTGDMSRARQLLEQSIRLKPNLKSTWKLYEDLELAYGSVYRAQLVYERCVVFMRQVGERLVVSEALPGDFKAGGMWIDALELSPSESAF 460          
BLAST of Ggra9375.t1 vs. uniprot
Match: R7QLC0 (TPR repeat-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLC0_CHOCR)

HSP 1 Score: 259 bits (662), Expect = 1.450e-73
Identity = 257/455 (56.48%), Postives = 293/455 (64.40%), Query Frame = 0
Query:  186 LQPLPLQLDLLNYRARRQMWRAPQRAEA--LFQRAVAINAADGRAWLGLARLRVAARKHDAARATFRAGVRASPRNAHLLQAWGVFEQRQRSMARAHALLRAAVRVQPTHAPAWVALSLWYQRVARDVHRARGCVRRATKVAPESYYAWTVWAQLESDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAPRQMMALLEFRDGRAEQARELFRSALHADRAHAPSWHAWACVERLCGDAPRARTLFQHAVWAAPHSPHAVRSXXXXXXXXXXXXXXXXXXXXXXXXXLIDAHSVPILTGLARLEARCGHMHRARELLETSVRLQPALGSTWKLYEDLELAHGSLRRARLVYRRCELYMKQLDQRVVVSDPLPGDFRAGGMWIDALQLDCADSAFHS 638
            L PLP+QLDLLNY AR    R   RA A  L++R V IN+ADGRAWLGLA+L +A      AR TFR GV +S +N+HLLQAWGV E+R+  + RA     AAVR  P H P+WVAL LWY+RV  DV  AR   R   +  P +YY W V   LE D       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                           AL  D  H P+WHAWA VE   G   RAR L+Q AVWAAP S H V+ XXXXXXXX                  +D+ SVP+L GLA +EA            ET +RLQP+  +TW+LYEDLE  +GS +RA+LVY R  +  KQ+D+R+VV  PLPGD+ AGGMWIDAL+L    SAF S
Sbjct:  149 LTPLPVQLDLLNYHARVASRRRNTRARARRLYRRCVDINSADGRAWLGLAKLHLAEGDVANARKTFRGGVNSSRKNSHLLQAWGVLEEREGFVDRAKGFYEAAVRANPQHTPSWVALGLWYRRVRNDVVHAREMFRNGIEADPTNYYVWHVLGVLEKDCLQFPVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALRIDDKHGPTWHAWARVESALGLFERARELYQEAVWAAPESKHVVKXXXXXXXXXLEEGNCRVARRYFAHGLEVDSKSVPLLEGLATVEAMXXXXXXXXXYFETCIRLQPSAKATWRLYEDLEREYGSAKRAQLVYERFVVTSKQVDERLVVGKPLPGDYAAGGMWIDALELKPTVSAFDS 603          
BLAST of Ggra9375.t1 vs. uniprot
Match: A0A7S2ZHW3 (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZHW3_9RHOD)

HSP 1 Score: 112 bits (280), Expect = 8.500e-24
Identity = 63/156 (40.38%), Postives = 89/156 (57.05%), Query Frame = 0
Query:  185 PLQPLPLQLDLLNYRARRQMWRAPQ-RAEALFQRAVAINAADGRAWLGLARLRVAARKHDAARATFRAGVRASPRNAHLLQAWGVFEQRQRSMARAHALLRAAVRVQPTHAPAWVALSLWYQRVARDVHRARGCVRRATKVAPESYYAWTVWAQLE 339
            P Q L + +DL+ +RAR    R+   +A+ L+ + + +   DGR W+GLA+L +   +   AR  F   ++   RN+HLLQAWGV E+R  + ARA +L   A    P HA +WVAL L+YQ    DV  AR C R  T+    +YY W VW +LE
Sbjct:   74 PGQVLKINVDLVFHRARNAQRRSDHDQAKELYLKCIKLRPYDGRGWMGLAQLEMCLERFSEARKIFSNALQFCRRNSHLLQAWGVLEERTGNYARAKSLYLQACDANPAHAASWVALGLFYQSRENDVDNARLCFRTGTEADSRNYYLWHVWGELE 229          
BLAST of Ggra9375.t1 vs. uniprot
Match: A0A7S0G054 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G054_9RHOD)

HSP 1 Score: 110 bits (275), Expect = 2.680e-22
Identity = 64/156 (41.03%), Postives = 88/156 (56.41%), Query Frame = 0
Query:  185 PLQPLPLQLDLLNYRARR-QMWRAPQRAEALFQRAVAINAADGRAWLGLARLRVAARKHDAARATFRAGVRASPRNAHLLQAWGVFEQRQRSMARAHALLRAAVRVQPTHAPAWVALSLWYQRVARDVHRARGCVRRATKVAPESYYAWTVWAQLE 339
            P Q L + +DL+ +RAR  Q       A+ L+ + + +   DGR W+GLA+L +   +   AR  F   ++   RN+HLLQAWGV E+R  + ARA +L   A    P HA +WVAL L+YQ    DV  AR C R  T+   E+YY W VW +LE
Sbjct:   74 PGQVLKINVDLVFHRARNGQRQSNHDLAKELYIKCIELRPYDGRGWMGLAQLEMRLEQFSEARKIFANALQFCRRNSHLLQAWGVLEERTGNYARAKSLYLQACDANPAHAASWVALGLFYQSRDNDVDSARQCFRTGTEADSENYYLWHVWGELE 229          
BLAST of Ggra9375.t1 vs. uniprot
Match: A0A2V3IFQ4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFQ4_9FLOR)

HSP 1 Score: 102 bits (255), Expect = 9.750e-21
Identity = 57/108 (52.78%), Postives = 70/108 (64.81%), Query Frame = 0
Query:    3 AAVATFASRVGAPRHVQPAGFRDFRGWLLRLSSAQAQHAWDELFGAVALAGGGDARAIQLHKVQMVRSIVRLVVKPRADESSKLVSTNAGRQAGKPRGSGSTLMSVLD 110
            AAV  FA++VG PR ++PAGFRDFRGWL  + S  A  AW  L  AV     G   +I+  K  +VR IV+ VV PR  ESSKLVSTN GRQ  +P  +G TLM++LD
Sbjct:   31 AAVLQFANQVGQPRVIEPAGFRDFRGWLAYVGSHSAATAWAPLVDAVLRDTNGHRSSIEALKEDLVREIVKKVVIPRHGESSKLVSTNCGRQCARP-ANGVTLMTILD 137          
BLAST of Ggra9375.t1 vs. uniprot
Match: A0A7S1TD61 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TD61_9RHOD)

HSP 1 Score: 94.7 bits (234), Expect = 9.510e-17
Identity = 54/127 (42.52%), Postives = 78/127 (61.42%), Query Frame = 0
Query:  185 PLQPLPLQLDLLNYRARRQMWRA-PQRAEALFQRAVAINAADGRAWLGLARLRVAARKHDAARATFRAGVRASPRNAHLLQAWGVFEQRQRSMARAHALLRAAVRVQPTHAPAWVALSLWYQRVARD 310
            P +PL + +DL ++ AR+   R     A  LF+R V ++  DGR WLGLARL     + +A+R TFR  VR    N+HLLQAWG+ E++  +++RA  LL +A+R    HAP+WVAL +   R  R+
Sbjct:   59 PSRPLKINVDLSHFHARQSQKRGNSSEALRLFRRCVDMDPYDGRGWLGLARLLFLRGEEEASRETFRNAVRYCRSNSHLLQAWGIMEEKAGNISRARRLLHSAIRADQKHAPSWVALGMLEYRRERN 185          
BLAST of Ggra9375.t1 vs. uniprot
Match: A0A6V2PVE4 (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2PVE4_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.360e-12
Identity = 59/176 (33.52%), Postives = 95/176 (53.98%), Query Frame = 0
Query:  188 PLPLQLDLLNYRARRQMWRAP-QRAEALFQRAVAINAADGRAWLGLARLRVAARKHDAARATFRAGVRASPR-----------------NAHLLQAWGVFEQRQRSMARAHALLRAAVRVQPTHAPAWVALS-LWYQRVARDVHRARGCVRRATKVA-----PESYYAWTVWAQLE 339
            PL +  D LNY A+R++ R   + A+ L++RA+AI+  DGRA+LGL+R+    R    A+   +AG+  S +                 N +LLQA G  E+R   +A A A+  +AVR +P HA AWV+L+ L  +++ +  +  R C + A +       P+S + +T WA +E
Sbjct:  336 PLKVNADRLNYHAKRELSRGHIEEAQELYERAIAIDPRDGRAYLGLSRVAQRRRDFVTAKEYLKAGIANSIKPSDSLTNGSSAGIESGGNPYLLQAMGCLEERLGHLAEAEAMFISAVRSRPCHAAAWVSLAQLRTRKLRQGANSGRMCYQTAERELRLSGLPQSSHVYTAWASME 511          
BLAST of Ggra9375.t1 vs. uniprot
Match: W7TNM5 (PsbB mRNA maturation factor n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNM5_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 3.440e-10
Identity = 48/120 (40.00%), Postives = 71/120 (59.17%), Query Frame = 0
Query:  187 QPLPLQLDLLNYRARRQMW-RAPQRAEALFQRAVAINAADGRAWLGLARLRVAARKHDAARATFRAGVRASPRNAHLLQAWGVFEQRQRSMARAHALLRAAVRVQPTHAPAWV--ALSLW 303
            +PLP QLDLL Y A+  +  R    A  ++QR + ++  DGRA++GLAR+    R   AA+A +   +R    N  +LQA+GVF+QR  ++ +A  L  AA+R  P H+ AW+  A  LW
Sbjct:  318 KPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLW 437          
BLAST of Ggra9375.t1 vs. uniprot
Match: L1JI73 (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JI73_GUITC)

HSP 1 Score: 65.5 bits (158), Expect = 2.720e-7
Identity = 42/116 (36.21%), Postives = 67/116 (57.76%), Query Frame = 0
Query:  180 RACAQPLQPLPLQLDLLNYRARRQMWRAP-QRAEALFQRAVAINAADGRAWLGLARLRVAARKHDAARATFRAGVRASPRNAHLLQAWGVFEQRQRSMARAHALLRAAVRVQPTHA 294
            R    P + L + LDL++Y ARR + R    ++E L+++ + ++A DGRAW+GLA+L     +   A+   ++G++  PR+  LLQA G  EQ+Q  +  A  L + AV    THA
Sbjct:  582 RDSVAPSKVLKINLDLMSYAARRALQRKEFDKSEDLYRKCLQMDAYDGRAWVGLAKLYEEKNQMFKAKEILQSGLQKLPRSPFLLQALGCIEQKQGQVVEALKLFQRAVEEDETHA 697          
BLAST of Ggra9375.t1 vs. uniprot
Match: A0A835Z1N5 (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1N5_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 8.240e-7
Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = 0
Query:  184 QPLQPLPLQLDLLNYRARRQMWRAPQ-RAEALFQRAVAINAADGRAWLGLARLRVAARKHDAARATFRAGVRASPRNAHLLQAWGVFEQ 271
            Q  +PLP+ LDLL+Y+A++ M       A  L++R V ++  DGR W+GLAR  +       ARA +  G+  SP N +LLQA+GV E+
Sbjct:   26 QRARPLPINLDLLSYKAKQAMIAGDATEAVRLYKRCVELDPRDGRGWMGLARYEMKQGNSARARALWETGLSNSPDNPYLLQAYGVMEE 114          
The following BLAST results are available for this feature:
BLAST of Ggra9375.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A2V3IVD22.530e-8759.29Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QLC01.450e-7356.48TPR repeat-containing protein n=1 Tax=Chondrus cri... [more]
A0A7S2ZHW38.500e-2440.38Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A7S0G0542.680e-2241.03Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A2V3IFQ49.750e-2152.78Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A7S1TD619.510e-1742.52Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A6V2PVE41.360e-1233.52Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
W7TNM53.440e-1040.00PsbB mRNA maturation factor n=3 Tax=Monodopsidacea... [more]
L1JI732.720e-736.21Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A835Z1N58.240e-741.57Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003107HAT (Half-A-TPR) repeatSMARTSM00386hat_new_1coord: 309..341
e-value: 630.0
score: 2.2
coord: 206..238
e-value: 36.0
score: 11.3
coord: 240..272
e-value: 43.0
score: 10.8
coord: 516..548
e-value: 49.0
score: 10.4
coord: 550..582
e-value: 10.0
score: 15.1
coord: 377..409
e-value: 300.0
score: 4.6
coord: 274..306
e-value: 480.0
score: 3.1
coord: 343..375
e-value: 170.0
score: 6.4
coord: 445..477
e-value: 1200.0
score: 0.1
coord: 479..514
e-value: 110.0
score: 7.7
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 226..259
e-value: 26.0
score: 11.3
coord: 363..396
e-value: 16.0
score: 13.2
coord: 502..535
e-value: 13.0
score: 14.1
coord: 536..569
e-value: 210.0
score: 3.3
coord: 431..464
e-value: 100.0
score: 6.2
coord: 329..362
e-value: 410.0
score: 0.8
IPR019734Tetratricopeptide repeatPFAMPF13181TPR_8coord: 503..533
e-value: 0.054
score: 13.7
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 363..396
score: 8.6439
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 266..337
e-value: 1.1E-5
score: 26.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 407..611
e-value: 3.2E-26
score: 94.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 338..406
e-value: 5.8E-8
score: 34.5
coord: 195..265
e-value: 5.7E-6
score: 28.1
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 208..499
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 457..589
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..183
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..107
IPR044624Tetratricopeptide-like repeat protein Mbb1-likePANTHERPTHR44917PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107coord: 165..557
coord: 435..596

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:124345..127051 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9375.t1Ggra9375.t1Gracilaria gracilis GNS1m malemRNAtig00000883_pilon 124345..127051 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9375.t1 ID=Ggra9375.t1|Name=Ggra9375.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=640bp
MHAAVATFASRVGAPRHVQPAGFRDFRGWLLRLSSAQAQHAWDELFGAVA
LAGGGDARAIQLHKVQMVRSIVRLVVKPRADESSKLVSTNAGRQAGKPRG
SGSTLMSVLDEQLRRWQRAHGASWAGSASAAAAAASAAASRMTDKVHAHL
LEEEQKPLGGGGGAGGGGGAGGGGGDGGGRACAQPLQPLPLQLDLLNYRA
RRQMWRAPQRAEALFQRAVAINAADGRAWLGLARLRVAARKHDAARATFR
AGVRASPRNAHLLQAWGVFEQRQRSMARAHALLRAAVRVQPTHAPAWVAL
SLWYQRVARDVHRARGCVRRATKVAPESYYAWTVWAQLESDARNVSTARA
LFERAAAANARNAATFVAWGVFEAAQGELPRAERAFQRAQQVSPRNVRAY
VAHAAALERAGFRNRARTALLRALRRRPHAPAPRQMMALLEFRDGRAEQA
RELFRSALHADRAHAPSWHAWACVERLCGDAPRARTLFQHAVWAAPHSPH
AVRSWHAWASLELELGQYDAARRYFAHALLIDAHSVPILTGLARLEARCG
HMHRARELLETSVRLQPALGSTWKLYEDLELAHGSLRRARLVYRRCELYM
KQLDQRVVVSDPLPGDFRAGGMWIDALQLDCADSAFHSF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003107HAT
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR044624Mbb1-like